{"id":"https://openalex.org/W4324088634","doi":"https://doi.org/10.1515/jib-2022-0058","title":"Synthetic biology open language (SBOL) version 3.1.0","display_name":"Synthetic biology open language (SBOL) version 3.1.0","publication_year":2023,"publication_date":"2023-03-01","ids":{"openalex":"https://openalex.org/W4324088634","doi":"https://doi.org/10.1515/jib-2022-0058"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2022-0058","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2022-0058","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2022-0058/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://www.degruyter.com/document/doi/10.1515/jib-2022-0058/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078340561","display_name":"Lukas Buecherl","orcid":"https://orcid.org/0000-0002-4844-6605"},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lukas Buecherl","raw_affiliation_strings":["University of Colorado Boulder , Boulder , USA"],"raw_orcid":"https://orcid.org/0000-0002-4844-6605","affiliations":[{"raw_affiliation_string":"University of Colorado Boulder , Boulder , USA","institution_ids":["https://openalex.org/I188538660"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055986631","display_name":"Thomas A. Mitchell","orcid":"https://orcid.org/0000-0001-8686-3226"},"institutions":[{"id":"https://openalex.org/I1306686416","display_name":"RTX (United States)","ror":"https://ror.org/0354t7b78","country_code":"US","type":"company","lineage":["https://openalex.org/I1306686416"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas Mitchell","raw_affiliation_strings":["Raytheon BBN Technologies , Cambridge , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Raytheon BBN Technologies , Cambridge , USA","institution_ids":["https://openalex.org/I1306686416"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021538869","display_name":"James Scott-Brown","orcid":"https://orcid.org/0000-0001-5642-8346"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"James Scott-Brown","raw_affiliation_strings":["University of Edinburgh , Edinburgh , UK"],"raw_orcid":"https://orcid.org/0000-0001-5642-8346","affiliations":[{"raw_affiliation_string":"University of Edinburgh , Edinburgh , UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037059285","display_name":"Prashant Vaidyanathan","orcid":"https://orcid.org/0000-0002-9722-7089"},"institutions":[{"id":"https://openalex.org/I4210146357","display_name":"Oxford BioMedica (United Kingdom)","ror":"https://ror.org/03dp0vf82","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210146357"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Prashant Vaidyanathan","raw_affiliation_strings":["Oxford Biomedica , Oxford , UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Oxford Biomedica , Oxford , UK","institution_ids":["https://openalex.org/I4210146357"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049003902","display_name":"Gonzalo Vidal","orcid":"https://orcid.org/0000-0003-3543-520X"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Gonzalo Vidal","raw_affiliation_strings":["Newcastle University , Newcastle upon Tyne , UK"],"raw_orcid":"https://orcid.org/0000-0003-3543-520X","affiliations":[{"raw_affiliation_string":"Newcastle University , Newcastle upon Tyne , UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059658712","display_name":"Hasan Baig","orcid":"https://orcid.org/0000-0002-8765-2604"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hasan Baig","raw_affiliation_strings":["University of Connecticut , Storrs , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Connecticut , Storrs , USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070268735","display_name":"Bryan Bartley","orcid":"https://orcid.org/0000-0002-1597-4022"},"institutions":[{"id":"https://openalex.org/I1306686416","display_name":"RTX (United States)","ror":"https://ror.org/0354t7b78","country_code":"US","type":"company","lineage":["https://openalex.org/I1306686416"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bryan Bartley","raw_affiliation_strings":["Raytheon BBN Technologies , Cambridge , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Raytheon BBN Technologies , Cambridge , USA","institution_ids":["https://openalex.org/I1306686416"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020446837","display_name":"Jacob Beal","orcid":"https://orcid.org/0000-0002-1663-5102"},"institutions":[{"id":"https://openalex.org/I1306686416","display_name":"RTX (United States)","ror":"https://ror.org/0354t7b78","country_code":"US","type":"company","lineage":["https://openalex.org/I1306686416"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jacob Beal","raw_affiliation_strings":["Raytheon BBN Technologies , Cambridge , USA"],"raw_orcid":"https://orcid.org/0000-0002-1663-5102","affiliations":[{"raw_affiliation_string":"Raytheon BBN Technologies , Cambridge , USA","institution_ids":["https://openalex.org/I1306686416"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045415388","display_name":"Matthew Crowther","orcid":"https://orcid.org/0000-0002-0497-2769"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Matthew Crowther","raw_affiliation_strings":["Newcastle University , Newcastle upon Tyne , UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Newcastle University , Newcastle upon Tyne , UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030689655","display_name":"Pedro Fontanarrosa","orcid":"https://orcid.org/0000-0002-0535-2684"},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pedro Fontanarrosa","raw_affiliation_strings":["University of Colorado Boulder , Boulder , USA"],"raw_orcid":"https://orcid.org/0000-0002-0535-2684","affiliations":[{"raw_affiliation_string":"University of Colorado Boulder , Boulder , USA","institution_ids":["https://openalex.org/I188538660"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000195963","display_name":"Thomas E. Gorochowski","orcid":"https://orcid.org/0000-0003-1702-786X"},"institutions":[{"id":"https://openalex.org/I36234482","display_name":"University of Bristol","ror":"https://ror.org/0524sp257","country_code":"GB","type":"education","lineage":["https://openalex.org/I36234482"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Thomas Gorochowski","raw_affiliation_strings":["University of Bristol , Bristol , UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Bristol , Bristol , UK","institution_ids":["https://openalex.org/I36234482"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037127624","display_name":"Raik Gr\u00fcnberg","orcid":"https://orcid.org/0000-0001-9532-6043"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Raik Gr\u00fcnberg","raw_affiliation_strings":["King Abdullah University for Science and Technology , Thuwal , SA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"King Abdullah University for Science and Technology , Thuwal , SA","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009592061","display_name":"Vishwesh Kulkarni","orcid":"https://orcid.org/0000-0002-2285-8652"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Vishwesh Kulkarni","raw_affiliation_strings":["University of Warwick , Coventry , UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Warwick , Coventry , UK","institution_ids":["https://openalex.org/I39555362"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086364805","display_name":"James Alastair McLaughlin","orcid":"https://orcid.org/0000-0002-8361-2795"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"James McLaughlin","raw_affiliation_strings":["Newcastle University , Newcastle upon Tyne , UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Newcastle University , Newcastle upon Tyne , UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028639846","display_name":"G\u00f6ksel M\u0131s\u0131rl\u0131","orcid":"https://orcid.org/0000-0002-2454-7188"},"institutions":[{"id":"https://openalex.org/I56007636","display_name":"Keele University","ror":"https://ror.org/00340yn33","country_code":"GB","type":"education","lineage":["https://openalex.org/I56007636"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"G\u00f6ksel M\u0131s\u0131rl\u0131","raw_affiliation_strings":["Keele University , Newcastle , UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Keele University , Newcastle , UK","institution_ids":["https://openalex.org/I56007636"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044567758","display_name":"Ernst Oberortner","orcid":"https://orcid.org/0000-0002-4287-5513"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ernst Oberortner","raw_affiliation_strings":["DOE Joint Genome Institute , Berkeley , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute , Berkeley , USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089978830","display_name":"Anil Wipat","orcid":"https://orcid.org/0000-0001-7310-4191"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Anil Wipat","raw_affiliation_strings":["Newcastle University , Newcastle upon Tyne , UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Newcastle University , Newcastle upon Tyne , UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111386695","display_name":"Chris J. Myers","orcid":null},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Chris Myers","raw_affiliation_strings":["University of Colorado Boulder , Boulder , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Colorado Boulder , Boulder , USA","institution_ids":["https://openalex.org/I188538660"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":18,"corresponding_author_ids":["https://openalex.org/A5111386695"],"corresponding_institution_ids":["https://openalex.org/I188538660"],"apc_list":null,"apc_paid":null,"fwci":2.9074,"has_fulltext":true,"cited_by_count":54,"citation_normalized_percentile":{"value":0.90974263,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"20","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9656000137329102,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/namespace","display_name":"Namespace","score":0.9460639357566833},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.721625804901123},{"id":"https://openalex.org/keywords/synthetic-biology","display_name":"Synthetic biology","score":0.5823614001274109},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.5732128024101257},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5489627718925476},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4903724193572998},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.44564568996429443},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.4281000792980194},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4248929023742676},{"id":"https://openalex.org/keywords/generalization","display_name":"Generalization","score":0.4130808115005493},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3644806146621704},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3593151867389679},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3441917598247528},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.34348130226135254},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17361101508140564},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1722886562347412},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1716945767402649},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15310370922088623}],"concepts":[{"id":"https://openalex.org/C2778383056","wikidata":"https://www.wikidata.org/wiki/Q873636","display_name":"Namespace","level":2,"score":0.9460639357566833},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.721625804901123},{"id":"https://openalex.org/C191908910","wikidata":"https://www.wikidata.org/wiki/Q862838","display_name":"Synthetic biology","level":2,"score":0.5823614001274109},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.5732128024101257},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5489627718925476},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4903724193572998},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.44564568996429443},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.4281000792980194},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4248929023742676},{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.4130808115005493},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3644806146621704},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3593151867389679},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3441917598247528},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.34348130226135254},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17361101508140564},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1722886562347412},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1716945767402649},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15310370922088623},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.1515/jib-2022-0058","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2022-0058","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2022-0058/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:research-information.bris.ac.uk:openaire_cris_publications/b894d08f-8ca0-46c7-aa64-80e330a1d8ec","is_oa":true,"landing_page_url":"https://research-information.bris.ac.uk/en/publications/b894d08f-8ca0-46c7-aa64-80e330a1d8ec","pdf_url":null,"source":{"id":"https://openalex.org/S4306400895","display_name":"Bristol Research (University of Bristol)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I36234482","host_organization_name":"University of Bristol","host_organization_lineage":["https://openalex.org/I36234482"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Buecherl, L, Mitchell, T, Scott-Brown, J, Vaidyanathan, P, Vidal, G, Baig, H, Bartley, B, Beal, J, Crowther, M, Fontanarrosa, P, Gorochowski, T E, Gr\u00fcnberg, R, Kulkarni, V, McLaughlin, J, Misirli, G, Oberortner, E, Wipat, A & Myers, C 2023, 'Synthetic biology open language (SBOL) version 3.1.0', Journal of Integrative Bioinformatics, vol. 20, no. 1, 20220058. https://doi.org/10.1515/jib-2022-0058","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:eprints.keele.ac.uk:12314","is_oa":true,"landing_page_url":"https://eprints.keele.ac.uk/id/eprint/12314/1/10.1515_jib-2022-0058.pdf","pdf_url":"https://keele-repository.worktribe.com/preview/461208/10.1515_jib-2022-0058.pdf","source":{"id":"https://openalex.org/S4306402149","display_name":"Keele Research Repository (Keele University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I56007636","host_organization_name":"Keele University","host_organization_lineage":["https://openalex.org/I56007636"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10063177","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10063177","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10063177/pdf/jib-20-1-jib-2022-0058.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Integr Bioinform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:0021204df4d0438f9757133196184834","is_oa":true,"landing_page_url":"https://doaj.org/article/0021204df4d0438f9757133196184834","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 20, Iss 1 (2023)","raw_type":"article"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/690346","is_oa":true,"landing_page_url":"http://hdl.handle.net/10754/690346","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:research-information.bris.ac.uk:publications/b894d08f-8ca0-46c7-aa64-80e330a1d8ec","is_oa":true,"landing_page_url":"https://hdl.handle.net/1983/b894d08f-8ca0-46c7-aa64-80e330a1d8ec","pdf_url":null,"source":{"id":"https://openalex.org/S4306400895","display_name":"Bristol Research (University of Bristol)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I36234482","host_organization_name":"University of Bristol","host_organization_lineage":["https://openalex.org/I36234482"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Buecherl, L, Mitchell, T, Scott-Brown, J, Vaidyanathan, P, Vidal, G, Baig, H, Bartley, B, Beal, J, Crowther, M, Fontanarrosa, P, Gorochowski, T E, Gr\u00fcnberg, R, Kulkarni, V, McLaughlin, J, Misirli, G, Oberortner, E, Wipat, A & Myers, C 2023, 'Synthetic biology open language (SBOL) version 3.1.0', Journal of Integrative Bioinformatics, vol. 20, no. 1, 20220058. https://doi.org/10.1515/jib-2022-0058","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1515/jib-2022-0058","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2022-0058","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2022-0058/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4324088634.pdf"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1997939758","https://openalex.org/W2033377040","https://openalex.org/W2044952215","https://openalex.org/W2060184615","https://openalex.org/W2145435867","https://openalex.org/W2150908245","https://openalex.org/W2170122529","https://openalex.org/W2316537542","https://openalex.org/W4256089495"],"related_works":["https://openalex.org/W2370740425","https://openalex.org/W4233446872","https://openalex.org/W2295002787","https://openalex.org/W3017834062","https://openalex.org/W4205941804","https://openalex.org/W2142058655","https://openalex.org/W4239878326","https://openalex.org/W4232798715","https://openalex.org/W2521664938","https://openalex.org/W4229548124"],"abstract_inverted_index":{"Abstract":[0],"Synthetic":[1,48],"biology":[2],"builds":[3],"upon":[4,165],"genetics,":[5],"molecular":[6],"biology,":[7,71],"and":[8,43,63,81,84,90,109,117,154,191,215],"metabolic":[9],"engineering":[10,13],"by":[11,103],"applying":[12],"principles":[14],"to":[15,29,59,145,176,209,225,228,258,263],"the":[16,37,41,61,138,177,185,203,206,219,235],"design":[17,67],"of":[18,35,40,65,107,126,156,179,205,213,237,248],"biological":[19,66],"systems.":[20],"When":[21],"designing":[22],"a":[23,57,105,123,194],"synthetic":[24,26,70],"system,":[25,42],"biologists":[27],"need":[28],"exchange":[30,64],"information":[31,68],"about":[32],"multiple":[33],"types":[34],"molecules,":[36],"intended":[38],"behavior":[39],"actual":[44],"experimental":[45],"measurements.":[46],"The":[47],"Biology":[49],"Open":[50],"Language":[51],"(SBOL)":[52],"has":[53,142,188,250],"been":[54,143,189],"developed":[55],"as":[56,111,113],"standard":[58],"support":[60,264],"specification":[62],"in":[69],"following":[72],"an":[73,146,180],"open":[74],"community":[75,167],"process":[76],"involving":[77],"both":[78],"bench":[79],"scientists":[80],"scientific":[82],"modelers":[83],"software":[85],"developers,":[86],"across":[87],"academia,":[88],"industry,":[89],"other":[91,115],"institutions.":[92],"This":[93],"document":[94],"describes":[95],"SBOL":[96,135,249],"3.1.0,":[97],"which":[98],"improves":[99],"on":[100,197],"version":[101,121,247],"3.0.0":[102],"including":[104],"number":[106],"corrections":[108],"clarifications":[110],"well":[112],"several":[114],"updates":[116,163],"enhancements.":[118],"First,":[119],"this":[120,246],"includes":[122,162],"complete":[124],"set":[125],"validation":[127],"rules":[128],"for":[129,151,241],"checking":[130],"whether":[131],"documents":[132],"are":[133,174],"valid":[134],"3.":[136],"Second,":[137],"best":[139],"practices":[140],"section":[141],"moved":[144],"online":[147],"repository":[148],"that":[149],"allows":[150],"more":[152],"rapid":[153],"interactive":[155],"sharing":[157],"these":[158],"conventions.":[159],"Third,":[160],"it":[161],"based":[164],"six":[166],"approved":[168],"enhancement":[169,172,201],"proposals.":[170],"Two":[171],"proposals":[173],"related":[175],"representation":[178],"object\u2019s":[181],"namespace.":[182],"In":[183],"particular,":[184],"Namespace":[186],"class":[187,208,221],"removed":[190],"replaced":[192],"with":[193],"namespace":[195],"property":[196],"each":[198],"class.":[199],"Another":[200,232],"is":[202,234],"generalization":[204],"CombinatorialDeriviation":[207],"allow":[210,223],"direct":[211],"use":[212,236],"Features":[214],"Measures":[216],".":[217,244],"Next,":[218],"Participation":[220],"now":[222],"Interactions":[224],"be":[226],"participants":[227],"describe":[229],"higher-order":[230],"interactions.":[231],"change":[233],"Sequence":[238],"Ontology":[239],"terms":[240],"Feature":[242],"orientation":[243],"Finally,":[245],"generalized":[251],"from":[252],"using":[253],"Unique":[254],"Reference":[255],"Identifiers":[256,261],"(URIs)":[257],"Internationalized":[259],"Resource":[260],"(IRIs)":[262],"international":[265],"character":[266],"sets.":[267]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":6},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":5},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":3},{"year":2013,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
