{"id":"https://openalex.org/W4313331197","doi":"https://doi.org/10.1515/jib-2022-0030","title":"GraphML-SBGN bidirectional converter for metabolic networks","display_name":"GraphML-SBGN bidirectional converter for metabolic networks","publication_year":2022,"publication_date":"2022-12-01","ids":{"openalex":"https://openalex.org/W4313331197","doi":"https://doi.org/10.1515/jib-2022-0030","pmid":"https://pubmed.ncbi.nlm.nih.gov/36563404"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2022-0030","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2022-0030","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2022-0030/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://www.degruyter.com/document/doi/10.1515/jib-2022-0030/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071459650","display_name":"Irina Balaur","orcid":"https://orcid.org/0000-0002-3671-895X"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I186903577","display_name":"University of Luxembourg","ror":"https://ror.org/036x5ad56","country_code":"LU","type":"education","lineage":["https://openalex.org/I186903577"]}],"countries":["FR","LU"],"is_corresponding":true,"raw_author_name":"Irina Balaur","raw_affiliation_strings":["European Institute for Systems Biology and Medicine, CIRI UMR5308, CNRS-ENS-UCBL-INSERM, Universit\u00e9 de Lyon , 50 Avenue Tony Garnier, 69007 Lyon , France","Luxembourg Centre for Systems Biomedicine , University of Luxembourg , 6 Avenue du Swing, L-4367 Belvaux , Luxembourg"],"affiliations":[{"raw_affiliation_string":"European Institute for Systems Biology and Medicine, CIRI UMR5308, CNRS-ENS-UCBL-INSERM, Universit\u00e9 de Lyon , 50 Avenue Tony Garnier, 69007 Lyon , France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Luxembourg Centre for Systems Biomedicine , University of Luxembourg , 6 Avenue du Swing, L-4367 Belvaux , Luxembourg","institution_ids":["https://openalex.org/I186903577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044453232","display_name":"Ludovic Roy","orcid":"https://orcid.org/0000-0001-6940-874X"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Ludovic Roy","raw_affiliation_strings":["European Institute for Systems Biology and Medicine, CIRI UMR5308, CNRS-ENS-UCBL-INSERM, Universit\u00e9 de Lyon , 50 Avenue Tony Garnier, 69007 Lyon , France"],"affiliations":[{"raw_affiliation_string":"European Institute for Systems Biology and Medicine, CIRI UMR5308, CNRS-ENS-UCBL-INSERM, Universit\u00e9 de Lyon , 50 Avenue Tony Garnier, 69007 Lyon , France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019876939","display_name":"Vasundra Tour\u00e9","orcid":"https://orcid.org/0000-0003-4639-4431"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["FR","NO"],"is_corresponding":false,"raw_author_name":"Vasundra Tour\u00e9","raw_affiliation_strings":["Department of Biology , Norwegian University of Science and Technology (NTNU) , H\u00f8gskoleringen 5, Realfagbygget, 7491 Trondheim , Norway","European Institute for Systems Biology and Medicine, CIRI UMR5308, CNRS-ENS-UCBL-INSERM, Universit\u00e9 de Lyon , 50 Avenue Tony Garnier, 69007 Lyon , France"],"affiliations":[{"raw_affiliation_string":"Department of Biology , Norwegian University of Science and Technology (NTNU) , H\u00f8gskoleringen 5, Realfagbygget, 7491 Trondheim , Norway","institution_ids":["https://openalex.org/I204778367"]},{"raw_affiliation_string":"European Institute for Systems Biology and Medicine, CIRI UMR5308, CNRS-ENS-UCBL-INSERM, Universit\u00e9 de Lyon , 50 Avenue Tony Garnier, 69007 Lyon , France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044361124","display_name":"Alexander Mazein","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I186903577","display_name":"University of Luxembourg","ror":"https://ror.org/036x5ad56","country_code":"LU","type":"education","lineage":["https://openalex.org/I186903577"]},{"id":"https://openalex.org/I4210155801","display_name":"Institute of Cell Biophysics","ror":"https://ror.org/05gbnpz65","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210129690","https://openalex.org/I4210155801"]}],"countries":["FR","LU","RU"],"is_corresponding":true,"raw_author_name":"Alexander Mazein","raw_affiliation_strings":["European Institute for Systems Biology and Medicine, CIRI UMR5308, CNRS-ENS-UCBL-INSERM, Universit\u00e9 de Lyon , 50 Avenue Tony Garnier, 69007 Lyon , France","Luxembourg Centre for Systems Biomedicine , University of Luxembourg , 6 Avenue du Swing, L-4367 Belvaux , Luxembourg","Russian Academy of Sciences , Institute of Cell Biophysics , 3 Institutskaya Street , Pushchino , Moscow Region , 142290 , Russia"],"affiliations":[{"raw_affiliation_string":"European Institute for Systems Biology and Medicine, CIRI UMR5308, CNRS-ENS-UCBL-INSERM, Universit\u00e9 de Lyon , 50 Avenue Tony Garnier, 69007 Lyon , France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Luxembourg Centre for Systems Biomedicine , University of Luxembourg , 6 Avenue du Swing, L-4367 Belvaux , Luxembourg","institution_ids":["https://openalex.org/I186903577"]},{"raw_affiliation_string":"Russian Academy of Sciences , Institute of Cell Biophysics , 3 Institutskaya Street , Pushchino , Moscow Region , 142290 , Russia","institution_ids":["https://openalex.org/I4210155801"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055008823","display_name":"Charles Auffray","orcid":"https://orcid.org/0000-0003-2226-7411"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Charles Auffray","raw_affiliation_strings":["European Institute for Systems Biology and Medicine, CIRI UMR5308, CNRS-ENS-UCBL-INSERM, Universit\u00e9 de Lyon , 50 Avenue Tony Garnier, 69007 Lyon , France"],"affiliations":[{"raw_affiliation_string":"European Institute for Systems Biology and Medicine, CIRI UMR5308, CNRS-ENS-UCBL-INSERM, Universit\u00e9 de Lyon , 50 Avenue Tony Garnier, 69007 Lyon , France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5044361124","https://openalex.org/A5071459650"],"corresponding_institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I186903577","https://openalex.org/I4210155801"],"apc_list":null,"apc_paid":null,"fwci":0.2604,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.53540746,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":96},"biblio":{"volume":"19","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sbml","display_name":"SBML","score":0.8483015298843384},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8280993103981018},{"id":"https://openalex.org/keywords/markup-language","display_name":"Markup language","score":0.6513739228248596},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5035337805747986},{"id":"https://openalex.org/keywords/notation","display_name":"Notation","score":0.47184255719184875},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.4481564462184906},{"id":"https://openalex.org/keywords/general-purpose","display_name":"General purpose","score":0.4222249686717987},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.3999979496002197},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.38195186853408813},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.16087672114372253},{"id":"https://openalex.org/keywords/arithmetic","display_name":"Arithmetic","score":0.1205834448337555},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.09394437074661255}],"concepts":[{"id":"https://openalex.org/C87186988","wikidata":"https://www.wikidata.org/wiki/Q452197","display_name":"SBML","level":4,"score":0.8483015298843384},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8280993103981018},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.6513739228248596},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5035337805747986},{"id":"https://openalex.org/C45357846","wikidata":"https://www.wikidata.org/wiki/Q2001982","display_name":"Notation","level":2,"score":0.47184255719184875},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.4481564462184906},{"id":"https://openalex.org/C2982832238","wikidata":"https://www.wikidata.org/wiki/Q5531640","display_name":"General purpose","level":2,"score":0.4222249686717987},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.3999979496002197},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.38195186853408813},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.16087672114372253},{"id":"https://openalex.org/C94375191","wikidata":"https://www.wikidata.org/wiki/Q11205","display_name":"Arithmetic","level":1,"score":0.1205834448337555},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.09394437074661255},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1515/jib-2022-0030","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2022-0030","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2022-0030/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36563404","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36563404","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:0954849482d548368cb4f309d3ed06d5","is_oa":true,"landing_page_url":"https://doaj.org/article/0954849482d548368cb4f309d3ed06d5","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 19, Iss 4, Pp 19-41 (2022)","raw_type":"article"},{"id":"pmh:oai:ntnuopen.ntnu.no:11250/3057844","is_oa":true,"landing_page_url":"https://hdl.handle.net/11250/3057844","pdf_url":null,"source":{"id":"https://openalex.org/S4306401716","display_name":"Duo Research Archive (University of Oslo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184942183","host_organization_name":"University of Oslo","host_organization_lineage":["https://openalex.org/I184942183"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"8","raw_type":"info:eu-repo/semantics/other"},{"id":"pmh:oai:orbilu.uni.lu:10993/57461","is_oa":true,"landing_page_url":"https://orbilu.uni.lu/handle/10993/57461","pdf_url":null,"source":{"id":"https://openalex.org/S4306401815","display_name":"Open Repository and Bibliography (University of Luxembourg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I186903577","host_organization_name":"University of Luxembourg","host_organization_lineage":["https://openalex.org/I186903577"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, 19 (4) (2022-12-01)","raw_type":"peer reviewed"},{"id":"pmh:oai:pubmedcentral.nih.gov:9800040","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9800040","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Integr Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1515/jib-2022-0030","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2022-0030","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2022-0030/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320330128","display_name":"Universit\u00e4t Greifswald","ror":"https://ror.org/00r1edq15"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4313331197.pdf","grobid_xml":"https://content.openalex.org/works/W4313331197.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1499095623","https://openalex.org/W1969709265","https://openalex.org/W2069157810","https://openalex.org/W2132218677","https://openalex.org/W2134185611","https://openalex.org/W2138280093","https://openalex.org/W2150908245","https://openalex.org/W2154268795","https://openalex.org/W2163993275","https://openalex.org/W2339662749","https://openalex.org/W2791845486","https://openalex.org/W2794222238","https://openalex.org/W2895192159","https://openalex.org/W2950329335","https://openalex.org/W2962889697","https://openalex.org/W3000501949"],"related_works":["https://openalex.org/W2082621456","https://openalex.org/W2150908245","https://openalex.org/W2981332207","https://openalex.org/W2211443823","https://openalex.org/W2100525485","https://openalex.org/W2040642413","https://openalex.org/W3048335229","https://openalex.org/W2146744007","https://openalex.org/W1546010648","https://openalex.org/W2890725831"],"abstract_inverted_index":{"Systems":[0,38],"biology":[1],"researchers":[2],"need":[3],"feasible":[4],"solutions":[5],"for":[6],"editing":[7],"and":[8,47,76],"visualisation":[9],"of":[10,54,63],"large":[11],"biological":[12],"diagrams.":[13],"Here,":[14],"we":[15],"present":[16],"the":[17,27,33,37,52,61,64,69,73,98],"ySBGN":[18,79],"bidirectional":[19],"converter":[20,56],"that":[21],"translates":[22],"metabolic":[23,86],"pathways,":[24],"developed":[25],"in":[26,68,88,97],"general-purpose":[28,91],"yEd":[29],"Graph":[30],"Editor":[31],"(using":[32],"GraphML":[34,75],"format)":[35,71],"into":[36],"Biology":[39],"Graphical":[40],"Notation":[41],"Markup":[42],"Language":[43],"(SBGN-ML)":[44],"standard":[45,99],"format":[46],"vice":[48],"versa.":[49],"We":[50],"illustrate":[51],"functionality":[53],"this":[55],"by":[57],"applying":[58],"it":[59],"to":[60,72,83],"translation":[62],"ReconMap":[65],"resource":[66],"(available":[67],"SBGN-ML":[70],"yEd-specific":[74],"back.":[77],"The":[78],"tool":[80],"makes":[81],"possible":[82],"draw":[84],"extensive":[85],"diagrams":[87],"a":[89],"powerful":[90],"graph":[92],"editor":[93],"while":[94],"providing":[95],"results":[96],"SBGN":[100],"format.":[101]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
