{"id":"https://openalex.org/W4283270255","doi":"https://doi.org/10.1515/jib-2022-0016","title":"Considering best practices in color palettes for molecular visualizations","display_name":"Considering best practices in color palettes for molecular visualizations","publication_year":2022,"publication_date":"2022-06-01","ids":{"openalex":"https://openalex.org/W4283270255","doi":"https://doi.org/10.1515/jib-2022-0016","pmid":"https://pubmed.ncbi.nlm.nih.gov/35731632"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2022-0016","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2022-0016","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2022-0016/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://www.degruyter.com/document/doi/10.1515/jib-2022-0016/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011301258","display_name":"Laura Garrison","orcid":"https://orcid.org/0000-0001-7134-2006"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Laura Garrison","raw_affiliation_strings":["Department of Informatics , University of Bergen , Bergen , Norway"],"raw_orcid":"https://orcid.org/0000-0001-7134-2006","affiliations":[{"raw_affiliation_string":"Department of Informatics , University of Bergen , Bergen , Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063965880","display_name":"Stefan Br\u00fcckner","orcid":"https://orcid.org/0000-0002-0885-8402"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Stefan Bruckner","raw_affiliation_strings":["Department of Informatics , University of Bergen , Bergen , Norway"],"raw_orcid":"https://orcid.org/0000-0002-0885-8402","affiliations":[{"raw_affiliation_string":"Department of Informatics , University of Bergen , Bergen , Norway","institution_ids":["https://openalex.org/I4432739"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5011301258"],"corresponding_institution_ids":["https://openalex.org/I4432739"],"apc_list":null,"apc_paid":null,"fwci":2.0384,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.86098219,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"19","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12496","display_name":"Color perception and design","score":0.9797999858856201,"subfield":{"id":"https://openalex.org/subfields/3207","display_name":"Social Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T12496","display_name":"Color perception and design","score":0.9797999858856201,"subfield":{"id":"https://openalex.org/subfields/3207","display_name":"Social Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13703","display_name":"Attention Economy in Education and Business","score":0.9236999750137329,"subfield":{"id":"https://openalex.org/subfields/1408","display_name":"Strategy and Management"},"field":{"id":"https://openalex.org/fields/14","display_name":"Business, Management and Accounting"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11079","display_name":"Creativity in Education and Neuroscience","score":0.9168999791145325,"subfield":{"id":"https://openalex.org/subfields/3205","display_name":"Experimental and Cognitive Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6002730131149292},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5990506410598755},{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.5426957011222839},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.47976335883140564},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.43848344683647156},{"id":"https://openalex.org/keywords/perspective","display_name":"Perspective (graphical)","score":0.43300673365592957},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.3642303943634033},{"id":"https://openalex.org/keywords/multimedia","display_name":"Multimedia","score":0.33198949694633484},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.31557244062423706}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6002730131149292},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5990506410598755},{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.5426957011222839},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.47976335883140564},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.43848344683647156},{"id":"https://openalex.org/C12713177","wikidata":"https://www.wikidata.org/wiki/Q1900281","display_name":"Perspective (graphical)","level":2,"score":0.43300673365592957},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.3642303943634033},{"id":"https://openalex.org/C49774154","wikidata":"https://www.wikidata.org/wiki/Q131765","display_name":"Multimedia","level":1,"score":0.33198949694633484},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.31557244062423706},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1515/jib-2022-0016","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2022-0016","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2022-0016/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35731632","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35731632","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9377702","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9377702","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Integr Bioinform","raw_type":"Text"},{"id":"pmh:oai:bora.uib.no:11250/3043748","is_oa":true,"landing_page_url":"https://hdl.handle.net/11250/3043748","pdf_url":null,"source":{"id":"https://openalex.org/S4306401716","display_name":"Duo Research Archive (University of Oslo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184942183","host_organization_name":"University of Oslo","host_organization_lineage":["https://openalex.org/I184942183"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"20220016","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:79ee9a72551c4e12a9fa02718cf1002b","is_oa":true,"landing_page_url":"https://doaj.org/article/79ee9a72551c4e12a9fa02718cf1002b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 19, Iss 2, Pp e308-8 (2022)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1515/jib-2022-0016","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2022-0016","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2022-0016/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4699999988079071,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G5179338445","display_name":null,"funder_award_id":"813558","funder_id":"https://openalex.org/F4320316417","funder_display_name":"Trond Mohn stiftelse"},{"id":"https://openalex.org/G8006902902","display_name":null,"funder_award_id":"813558","funder_id":"https://openalex.org/F4320323078","funder_display_name":"Universitetet i Bergen"}],"funders":[{"id":"https://openalex.org/F4320316417","display_name":"Trond Mohn stiftelse","ror":null},{"id":"https://openalex.org/F4320323078","display_name":"Universitetet i Bergen","ror":"https://ror.org/03zga2b32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4283270255.pdf","grobid_xml":"https://content.openalex.org/works/W4283270255.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W177671575","https://openalex.org/W1487643133","https://openalex.org/W1830709933","https://openalex.org/W1909247982","https://openalex.org/W1977400967","https://openalex.org/W1992385516","https://openalex.org/W1996483309","https://openalex.org/W2000141706","https://openalex.org/W2013989095","https://openalex.org/W2023425620","https://openalex.org/W2026678302","https://openalex.org/W2031843365","https://openalex.org/W2052150953","https://openalex.org/W2058061271","https://openalex.org/W2097263426","https://openalex.org/W2108919989","https://openalex.org/W2114244773","https://openalex.org/W2114566476","https://openalex.org/W2117379956","https://openalex.org/W2172463224","https://openalex.org/W2511469011","https://openalex.org/W2515158665","https://openalex.org/W2611374796","https://openalex.org/W2615746795","https://openalex.org/W2788435232","https://openalex.org/W2871209700","https://openalex.org/W2883244140","https://openalex.org/W2916367892","https://openalex.org/W2923423536","https://openalex.org/W2969417939","https://openalex.org/W2997076439","https://openalex.org/W3012820174","https://openalex.org/W3215051713"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2905433371","https://openalex.org/W2888392564","https://openalex.org/W4310278675","https://openalex.org/W4388422664","https://openalex.org/W4390569940","https://openalex.org/W4361193272","https://openalex.org/W2963326959","https://openalex.org/W4388685194","https://openalex.org/W4312407344"],"abstract_inverted_index":{"Biomedical":[0,21],"illustration":[1],"and":[2,49,69,139,182],"visualization":[3],"techniques":[4],"provide":[5,171],"a":[6,29,38,110,122,130,145,172],"window":[7],"into":[8],"complex":[9],"molecular":[10,30,64,142,198],"worlds":[11],"that":[12,73,135,161],"are":[13],"difficult":[14],"to":[15,26,33,91,102,163,197],"capture":[16],"through":[17],"experimental":[18],"means":[19],"alone.":[20],"illustrators":[22],"frequently":[23],"employ":[24],"color":[25,42,74,113,125,133,167,176,194],"help":[27],"tell":[28],"story,":[31],"e.g.,":[32,96],"identify":[34],"key":[35],"molecules":[36,45],"in":[37,124,149,179],"signaling":[39],"pathway.":[40],"Currently,":[41],"use":[43,75],"for":[44,119,189],"is":[46,66,116,129,152],"largely":[47],"arbitrary":[48],"often":[50],"chosen":[51],"based":[52],"on":[53],"the":[54,79,82,98,137,159],"client,":[55],"cultural":[56],"factors,":[57],"or":[58],"personal":[59],"taste.":[60],"The":[61,112,127],"study":[62],"of":[63,81,141,158,166,175],"dynamics":[65],"relatively":[67],"young,":[68],"some":[70,157],"stakeholders":[71],"argue":[72],"guidelines":[76],"would":[77],"throttle":[78],"growth":[80],"field.":[83],"Instead,":[84],"content":[85],"authors":[86],"have":[87],"ample":[88],"creative":[89,106],"freedom":[90,107],"choose":[92],"an":[93],"aesthetic":[94],"that,":[95],"supports":[97],"story":[99],"they":[100],"want":[101],"tell.":[103],"However,":[104],"such":[105],"comes":[108],"at":[109],"price.":[111],"design":[114],"process":[115],"challenging,":[117],"particularly":[118],"those":[120],"without":[121],"background":[123],"theory.":[126],"result":[128],"semantically":[131],"inconsistent":[132],"space":[134],"reduces":[136],"interpretability":[138],"effectiveness":[140],"visualizations":[143],"as":[144],"whole.":[146],"Our":[147],"contribution":[148],"this":[150,164],"paper":[151],"threefold.":[153],"We":[154],"first":[155],"discuss":[156],"factors":[160],"contribute":[162],"array":[165],"palettes.":[168],"Second,":[169],"we":[170,186],"brief":[173],"sampling":[174],"palettes":[177,195],"used":[178],"both":[180],"industry":[181],"research":[183],"sectors.":[184],"Lastly,":[185],"suggest":[187],"considerations":[188],"developing":[190],"best":[191],"practices":[192],"around":[193],"applied":[196],"visualization.":[199]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
