{"id":"https://openalex.org/W4283370938","doi":"https://doi.org/10.1515/jib-2022-0013","title":"Integrative illustration of a JCVI-syn3A minimal cell","display_name":"Integrative illustration of a JCVI-syn3A minimal cell","publication_year":2022,"publication_date":"2022-06-01","ids":{"openalex":"https://openalex.org/W4283370938","doi":"https://doi.org/10.1515/jib-2022-0013","pmid":"https://pubmed.ncbi.nlm.nih.gov/35749071"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2022-0013","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2022-0013","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2022-0013/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.degruyter.com/document/doi/10.1515/jib-2022-0013/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040337866","display_name":"David S. Goodsell","orcid":"https://orcid.org/0000-0002-5932-2130"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David S. Goodsell","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology , The Scripps Research Institute , La Jolla , CA 92037 , USA","Research Collaboratory for Structural Bioinformatics Protein Data Bank , Rutgers, The State University of New Jersey , Piscataway , NJ 08854 , USA"],"raw_orcid":"https://orcid.org/0000-0002-5932-2130","affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology , The Scripps Research Institute , La Jolla , CA 92037 , USA","institution_ids":["https://openalex.org/I123431417"]},{"raw_affiliation_string":"Research Collaboratory for Structural Bioinformatics Protein Data Bank , Rutgers, The State University of New Jersey , Piscataway , NJ 08854 , USA","institution_ids":["https://openalex.org/I102322142"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5040337866"],"corresponding_institution_ids":["https://openalex.org/I102322142","https://openalex.org/I123431417"],"apc_list":{"value":1050,"currency":"EUR","value_usd":1187},"apc_paid":{"value":1050,"currency":"EUR","value_usd":1187},"fwci":0.6326,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.6239079,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":97},"biblio":{"volume":"19","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9879000186920166,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9833999872207642,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/depiction","display_name":"Depiction","score":0.7696136236190796},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6785004734992981},{"id":"https://openalex.org/keywords/projection","display_name":"Projection (relational algebra)","score":0.4805324673652649},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.356265127658844},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3315947353839874},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.0914800763130188}],"concepts":[{"id":"https://openalex.org/C2779702343","wikidata":"https://www.wikidata.org/wiki/Q1166770","display_name":"Depiction","level":2,"score":0.7696136236190796},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6785004734992981},{"id":"https://openalex.org/C57493831","wikidata":"https://www.wikidata.org/wiki/Q3134666","display_name":"Projection (relational algebra)","level":2,"score":0.4805324673652649},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.356265127658844},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3315947353839874},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.0914800763130188},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008967","descriptor_name":"Molecular Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008967","descriptor_name":"Molecular Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008967","descriptor_name":"Molecular Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008967","descriptor_name":"Molecular Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020285","descriptor_name":"Cryoelectron Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020285","descriptor_name":"Cryoelectron Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020285","descriptor_name":"Cryoelectron Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020285","descriptor_name":"Cryoelectron Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1515/jib-2022-0013","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2022-0013","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2022-0013/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35749071","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35749071","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9377704","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9377704","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Integr Bioinform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:85f62a9a1bc8475abe808b110cbe965e","is_oa":true,"landing_page_url":"https://doaj.org/article/85f62a9a1bc8475abe808b110cbe965e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 19, Iss 2, Pp 203-6 (2022)","raw_type":"article"},{"id":"pmh:oai:osti.gov:1967533","is_oa":false,"landing_page_url":"https://www.osti.gov/biblio/1967533","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1515/jib-2022-0013","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2022-0013","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2022-0013/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1378632953","display_name":"PDB Management by The Research Collaboratory for Structural Bioinformatics","funder_award_id":"1832184","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G1571012498","display_name":"PDB MANAGEMENT BY THE RESEARCH COLLABORATORY FOR STRUCTURAL BIOINFORMATICS","funder_award_id":"3r01gm133198-01s1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4277241226","display_name":"Modeling and Interacting with the Visible Molecular Cell","funder_award_id":"5r01gm120604-07","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6126333415","display_name":null,"funder_award_id":"R01 GM120604","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6474250024","display_name":null,"funder_award_id":"R01 GM133198","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G8278765382","display_name":"PDB MANAGEMENT BY THE RESEARCH COLLABORATORY FOR STRUCTURAL BIOINFORMATICS","funder_award_id":"DESC0019749","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4283370938.pdf","grobid_xml":"https://content.openalex.org/works/W4283370938.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1969824329","https://openalex.org/W2042686244","https://openalex.org/W2049684722","https://openalex.org/W2051925784","https://openalex.org/W2058061271","https://openalex.org/W2069165179","https://openalex.org/W2097716081","https://openalex.org/W2117213358","https://openalex.org/W2137081760","https://openalex.org/W2147085530","https://openalex.org/W2304674135","https://openalex.org/W2324515915","https://openalex.org/W2335557293","https://openalex.org/W2620998958","https://openalex.org/W2782837672","https://openalex.org/W2807479273","https://openalex.org/W2910514964","https://openalex.org/W2990341088","https://openalex.org/W3037971012","https://openalex.org/W3080720382","https://openalex.org/W3117120799","https://openalex.org/W3136918052","https://openalex.org/W3141185651","https://openalex.org/W3177828909","https://openalex.org/W3185854339","https://openalex.org/W3214093190","https://openalex.org/W4205569118","https://openalex.org/W4236865533","https://openalex.org/W4252981563"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2354497654","https://openalex.org/W1521279281","https://openalex.org/W1925626449","https://openalex.org/W1677035131","https://openalex.org/W3012686786","https://openalex.org/W4239616774","https://openalex.org/W2375460546","https://openalex.org/W2112416132"],"abstract_inverted_index":{"Data":[0],"from":[1],"genomics,":[2],"proteomics,":[3],"structural":[4,13],"biology":[5],"and":[6,44,73,115],"cryo-electron":[7],"microscopy":[8],"are":[9,105],"integrated":[10],"into":[11],"a":[12,16],"illustration":[14,26,125],"of":[15,59,66,82,112,119,133],"cross":[17],"section":[18],"through":[19],"an":[20,74,91,120],"entire":[21,121],"JCVI-syn3.0":[22],"minimal":[23],"cell.":[24,84,135],"The":[25,124],"is":[27],"designed":[28],"with":[29,62],"several":[30,102],"goals:":[31],"to":[32,37,45,53,69,76],"inspire":[33],"excitement":[34],"in":[35,48,107],"science,":[36],"depict":[38],"the":[39,83,96,108,113,116,127],"underlying":[40],"scientific":[41],"results":[42],"accurately,":[43],"be":[46],"feasible":[47],"traditional":[49],"media.":[50],"Design":[51],"choices":[52],"achieve":[54],"these":[55],"goals":[56],"include":[57],"reduction":[58],"visual":[60],"complexity":[61],"simplified":[63],"representations,":[64],"use":[65],"orthographic":[67],"projection":[68],"retain":[70],"scale":[71],"relationships,":[72],"approach":[75],"color":[77],"that":[78,86],"highlights":[79],"functional":[80,103],"compartments":[81],"Given":[85],"this":[87,134],"simple":[88],"cell":[89,114],"provides":[90],"attractive":[92],"laboratory":[93],"for":[94,100,129],"exploring":[95],"central":[97],"processes":[98],"needed":[99],"life,":[101],"narratives":[104],"included":[106],"illustration,":[109],"including":[110],"division":[111],"first":[117],"depiction":[118],"cellular":[122],"proteome.":[123],"lays":[126],"foundation":[128],"3D":[130],"molecular":[131],"modeling":[132]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2}],"updated_date":"2026-09-11T09:22:31.653822","created_date":"2025-10-10T00:00:00"}
