{"id":"https://openalex.org/W4293199734","doi":"https://doi.org/10.1515/jib-2022-0006","title":"Evaluating molecular representations in machine learning models for drug response prediction and interpretability","display_name":"Evaluating molecular representations in machine learning models for drug response prediction and interpretability","publication_year":2022,"publication_date":"2022-08-26","ids":{"openalex":"https://openalex.org/W4293199734","doi":"https://doi.org/10.1515/jib-2022-0006","pmid":"https://pubmed.ncbi.nlm.nih.gov/36017668"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2022-0006","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2022-0006","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2022-0006/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://www.degruyter.com/document/doi/10.1515/jib-2022-0006/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012833188","display_name":"Delora Baptista","orcid":"https://orcid.org/0000-0002-9258-5303"},"institutions":[{"id":"https://openalex.org/I99682543","display_name":"University of Minho","ror":"https://ror.org/037wpkx04","country_code":"PT","type":"education","lineage":["https://openalex.org/I99682543"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Delora Baptista","raw_affiliation_strings":["Centre of Biological Engineering , University of Minho, Campus of Gualtar , Braga , Portugal"],"raw_orcid":"https://orcid.org/0000-0002-9258-5303","affiliations":[{"raw_affiliation_string":"Centre of Biological Engineering , University of Minho, Campus of Gualtar , Braga , Portugal","institution_ids":["https://openalex.org/I99682543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025761868","display_name":"Jo\u00e3o Correia","orcid":"https://orcid.org/0000-0001-5190-4825"},"institutions":[{"id":"https://openalex.org/I99682543","display_name":"University of Minho","ror":"https://ror.org/037wpkx04","country_code":"PT","type":"education","lineage":["https://openalex.org/I99682543"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Jo\u00e3o Correia","raw_affiliation_strings":["Centre of Biological Engineering , University of Minho, Campus of Gualtar , Braga , Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre of Biological Engineering , University of Minho, Campus of Gualtar , Braga , Portugal","institution_ids":["https://openalex.org/I99682543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100716328","display_name":"Bruno Pereira","orcid":"https://orcid.org/0000-0002-1318-086X"},"institutions":[{"id":"https://openalex.org/I99682543","display_name":"University of Minho","ror":"https://ror.org/037wpkx04","country_code":"PT","type":"education","lineage":["https://openalex.org/I99682543"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Bruno Pereira","raw_affiliation_strings":["Centre of Biological Engineering , University of Minho, Campus of Gualtar , Braga , Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre of Biological Engineering , University of Minho, Campus of Gualtar , Braga , Portugal","institution_ids":["https://openalex.org/I99682543"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040524717","display_name":"Miguel Rocha","orcid":"https://orcid.org/0000-0001-8439-8172"},"institutions":[{"id":"https://openalex.org/I99682543","display_name":"University of Minho","ror":"https://ror.org/037wpkx04","country_code":"PT","type":"education","lineage":["https://openalex.org/I99682543"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Miguel Rocha","raw_affiliation_strings":["Centre of Biological Engineering , University of Minho, Campus of Gualtar , Braga , Portugal"],"raw_orcid":"https://orcid.org/0000-0001-8439-8172","affiliations":[{"raw_affiliation_string":"Centre of Biological Engineering , University of Minho, Campus of Gualtar , Braga , Portugal","institution_ids":["https://openalex.org/I99682543"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5040524717"],"corresponding_institution_ids":["https://openalex.org/I99682543"],"apc_list":null,"apc_paid":null,"fwci":5.7881,"has_fulltext":true,"cited_by_count":43,"citation_normalized_percentile":{"value":0.96677377,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"19","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9470999836921692,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.8844007253646851},{"id":"https://openalex.org/keywords/cheminformatics","display_name":"Cheminformatics","score":0.8513339757919312},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7884340286254883},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6701252460479736},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6477572917938232},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.6050989627838135},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5921401977539062},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5390374660491943},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4576311707496643},{"id":"https://openalex.org/keywords/molecular-descriptor","display_name":"Molecular descriptor","score":0.43596506118774414},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.36495834589004517},{"id":"https://openalex.org/keywords/quantitative-structure\u2013activity-relationship","display_name":"Quantitative structure\u2013activity relationship","score":0.29576659202575684},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.10384759306907654}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.8844007253646851},{"id":"https://openalex.org/C68762167","wikidata":"https://www.wikidata.org/wiki/Q910164","display_name":"Cheminformatics","level":2,"score":0.8513339757919312},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7884340286254883},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6701252460479736},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6477572917938232},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.6050989627838135},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5921401977539062},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5390374660491943},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4576311707496643},{"id":"https://openalex.org/C164923092","wikidata":"https://www.wikidata.org/wiki/Q3705921","display_name":"Molecular descriptor","level":3,"score":0.43596506118774414},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.36495834589004517},{"id":"https://openalex.org/C164126121","wikidata":"https://www.wikidata.org/wiki/Q766383","display_name":"Quantitative structure\u2013activity relationship","level":2,"score":0.29576659202575684},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.10384759306907654},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1515/jib-2022-0006","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2022-0006","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2022-0006/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36017668","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36017668","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:7c8a1fda0e824e5ea327bac3da65ea03","is_oa":true,"landing_page_url":"https://doaj.org/article/7c8a1fda0e824e5ea327bac3da65ea03","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 19, Iss 3, Pp 31-9 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9521826","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9521826","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Integr Bioinform","raw_type":"Text"},{"id":"pmh:oai:repositorium.sdum.uminho.pt:1822/79871","is_oa":true,"landing_page_url":"https://hdl.handle.net/1822/79871","pdf_url":null,"source":{"id":"https://openalex.org/S4306400354","display_name":"Reposit\u00f3riUM (Universidade do Minho)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I99682543","host_organization_name":"University of Minho","host_organization_lineage":["https://openalex.org/I99682543"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":null}],"best_oa_location":{"id":"doi:10.1515/jib-2022-0006","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2022-0006","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2022-0006/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7099999785423279,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1203399442","display_name":"Centre of Biological Engineering of the University of Minho","funder_award_id":"UIDB/04469/2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G2960934612","display_name":null,"funder_award_id":"SFRH/BD/130913/2017","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G6583233356","display_name":null,"funder_award_id":"NORTE-01-0247-FEDER- 039831","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"}],"funders":[{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4293199734.pdf","grobid_xml":"https://content.openalex.org/works/W4293199734.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1832693441","https://openalex.org/W1966813923","https://openalex.org/W1983478747","https://openalex.org/W1988037271","https://openalex.org/W2021748110","https://openalex.org/W2044834685","https://openalex.org/W2107793528","https://openalex.org/W2108068107","https://openalex.org/W2173027866","https://openalex.org/W2175970000","https://openalex.org/W2200017991","https://openalex.org/W2594183968","https://openalex.org/W2618851150","https://openalex.org/W2777416523","https://openalex.org/W2805404971","https://openalex.org/W2806547269","https://openalex.org/W2887685819","https://openalex.org/W2900090807","https://openalex.org/W2953265656","https://openalex.org/W2966357564","https://openalex.org/W2968734407","https://openalex.org/W2970119293","https://openalex.org/W2996972660","https://openalex.org/W3035604179","https://openalex.org/W3082081167","https://openalex.org/W3101319109","https://openalex.org/W3116202926","https://openalex.org/W3195831412","https://openalex.org/W6675354045","https://openalex.org/W6713134421"],"related_works":["https://openalex.org/W4283836736","https://openalex.org/W2123676318","https://openalex.org/W4385480455","https://openalex.org/W2327127510","https://openalex.org/W4293090197","https://openalex.org/W365390473","https://openalex.org/W3042998478","https://openalex.org/W2055246239","https://openalex.org/W3127298458","https://openalex.org/W4384526017"],"abstract_inverted_index":{"feature":[0],"attribution":[1],"method":[2],"can":[3],"boost":[4],"the":[5,8],"explainability":[6],"of":[7],"DL":[9],"models.":[10]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":17},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":8}],"updated_date":"2026-05-12T08:28:47.272897","created_date":"2025-10-10T00:00:00"}
