{"id":"https://openalex.org/W3138117676","doi":"https://doi.org/10.1515/jib-2021-0001","title":"Novel perspectives for SARS-CoV-2 genome browsing","display_name":"Novel perspectives for SARS-CoV-2 genome browsing","publication_year":2021,"publication_date":"2021-03-01","ids":{"openalex":"https://openalex.org/W3138117676","doi":"https://doi.org/10.1515/jib-2021-0001","mag":"3138117676","pmid":"https://pubmed.ncbi.nlm.nih.gov/33721918"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2021-0001","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2021-0001","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2021-0001/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://www.degruyter.com/document/doi/10.1515/jib-2021-0001/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090632467","display_name":"Visam G\u00fcltekin","orcid":null},"institutions":[{"id":"https://openalex.org/I79946792","display_name":"Mu\u011fla University","ror":"https://ror.org/05n2cz176","country_code":"TR","type":"education","lineage":["https://openalex.org/I79946792"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Visam G\u00fcltekin","raw_affiliation_strings":["Ekofan So\u011futma , Mugla , Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ekofan So\u011futma , Mugla , Turkey","institution_ids":["https://openalex.org/I79946792"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043036637","display_name":"Jens Allmer","orcid":"https://orcid.org/0000-0002-2164-7335"},"institutions":[{"id":"https://openalex.org/I4210123225","display_name":"Ruhr West University of Applied Sciences","ror":"https://ror.org/02nkxrq89","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210123225"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Jens Allmer","raw_affiliation_strings":["Hochschule Ruhr West, Institute for Measurement Engineering and Sensor Technology, Medical Informatics and Bioinformatics , M\u00fclheim an der Ruhr , Germany"],"raw_orcid":"https://orcid.org/0000-0002-2164-7335","affiliations":[{"raw_affiliation_string":"Hochschule Ruhr West, Institute for Measurement Engineering and Sensor Technology, Medical Informatics and Bioinformatics , M\u00fclheim an der Ruhr , Germany","institution_ids":["https://openalex.org/I4210123225"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5043036637"],"corresponding_institution_ids":["https://openalex.org/I4210123225"],"apc_list":null,"apc_paid":null,"fwci":0.2443,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.51791131,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"18","issue":"1","first_page":"19","last_page":"26"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.8860275745391846},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.7464889287948608},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5748241543769836},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5662534832954407},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.4790288507938385},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4499845504760742},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.44815149903297424},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.44383442401885986},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.4320186972618103},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.35428884625434875},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.29655182361602783},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2670953571796417},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1005328893661499},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.07140392065048218},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.06651648879051208}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.8860275745391846},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.7464889287948608},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5748241543769836},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5662534832954407},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.4790288507938385},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4499845504760742},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.44815149903297424},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.44383442401885986},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.4320186972618103},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.35428884625434875},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.29655182361602783},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2670953571796417},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1005328893661499},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.07140392065048218},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.06651648879051208},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1515/jib-2021-0001","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2021-0001","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2021-0001/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33721918","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33721918","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:f34cc4d820f44bc694df64090ed34d87","is_oa":true,"landing_page_url":"https://doaj.org/article/f34cc4d820f44bc694df64090ed34d87","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 18, Iss 1, Pp 19-26 (2021)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8035962","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8035962","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Integr Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1515/jib-2021-0001","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2021-0001","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2021-0001/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.44999998807907104,"id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3138117676.pdf","grobid_xml":"https://content.openalex.org/works/W3138117676.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1555956901","https://openalex.org/W1965588691","https://openalex.org/W2096403311","https://openalex.org/W2103250001","https://openalex.org/W2131988685","https://openalex.org/W2144177541","https://openalex.org/W2151937581","https://openalex.org/W2158589895","https://openalex.org/W2522625197","https://openalex.org/W2745237597","https://openalex.org/W2746775577","https://openalex.org/W2918270390","https://openalex.org/W2986925253","https://openalex.org/W3008443627","https://openalex.org/W3010781235","https://openalex.org/W3012510801","https://openalex.org/W3023709809","https://openalex.org/W3033005856","https://openalex.org/W3084261392","https://openalex.org/W3096270667","https://openalex.org/W4205247356"],"related_works":["https://openalex.org/W2921363728","https://openalex.org/W2279684808","https://openalex.org/W3217304749","https://openalex.org/W3138117676","https://openalex.org/W2066142713","https://openalex.org/W2894932706","https://openalex.org/W2581212852","https://openalex.org/W2767606877","https://openalex.org/W4404511434","https://openalex.org/W2582968398"],"abstract_inverted_index":{"SARS-CoV-2":[0,16,35],"has":[1],"spread":[2],"worldwide":[3,149],"and":[4,8,21,58,115,151],"caused":[5],"social,":[6],"economic,":[7],"health":[9],"turmoil.":[10],"The":[11,162],"first":[12],"genome":[13,82,107,137,163],"assembly":[14],"of":[15,54,160],"was":[17],"produced":[18],"in":[19,80,98,106,157],"Wuhan,":[20],"it":[22],"is":[23,144,165],"widely":[24],"used":[25,65],"as":[26,66,112,118,120,127],"a":[27,32,67,81,136,154],"reference.":[28],"Subsequently,":[29],"more":[30],"than":[31],"hundred":[33],"additional":[34],"genomes":[36,42,57],"have":[37],"been":[38],"sequenced.":[39],"While":[40],"the":[41,59,71,96,130,141,158],"appear":[43],"to":[44,129],"be":[45,64],"mostly":[46],"identical,":[47],"there":[48],"are":[49,75,90],"variations.":[50],"Therefore,":[51],"an":[52],"alignment":[53],"all":[55],"available":[56,166],"derived":[60],"consensus":[61,131,142],"sequence":[62,143],"could":[63],"reference,":[68],"better":[69,145],"serving":[70],"science":[72],"community.":[73],"Variations":[74],"significant,":[76],"but":[77],"representing":[78],"them":[79],"browser":[83,138,164],"can":[84,152],"become,":[85],"especially":[86],"if":[87],"their":[88],"sequences":[89],"largely":[91],"identical.":[92],"Here":[93],"we":[94],"summarize":[95],"variation":[97],"one":[99],"track.":[100],"Other":[101],"information":[102],"not":[103],"currently":[104],"found":[105],"browsers":[108],"for":[109],"SARS-CoV-2,":[110],"such":[111],"predicted":[113,116],"miRNAs":[114],"TRS":[117],"well":[119],"secondary":[121],"structure":[122],"information,":[123],"were":[124],"also":[125],"added":[126],"tracks":[128],"genome.":[132],"We":[133],"believe":[134],"that":[135],"based":[139],"on":[140],"suited":[146],"when":[147],"considering":[148],"effects":[150],"become":[153],"valuable":[155],"resource":[156],"combating":[159],"COVID-19.":[161],"at":[167],"http://cov.iaba.online.":[168]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":2}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
