{"id":"https://openalex.org/W3036988853","doi":"https://doi.org/10.1515/jib-2020-0016","title":"Systems biology graphical notation markup language (SBGNML) version 0.3","display_name":"Systems biology graphical notation markup language (SBGNML) version 0.3","publication_year":2020,"publication_date":"2020-06-01","ids":{"openalex":"https://openalex.org/W3036988853","doi":"https://doi.org/10.1515/jib-2020-0016","mag":"3036988853","pmid":"https://pubmed.ncbi.nlm.nih.gov/32568733"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2020-0016","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2020-0016","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2020-0016/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://www.degruyter.com/document/doi/10.1515/jib-2020-0016/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076617999","display_name":"Frank Bergmann","orcid":"https://orcid.org/0000-0001-5553-4702"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Frank T. Bergmann","raw_affiliation_strings":["BioQUANT/COS , Heidelberg University , INF 267 , Heidelberg , 69120 , Germany"],"affiliations":[{"raw_affiliation_string":"BioQUANT/COS , Heidelberg University , INF 267 , Heidelberg , 69120 , Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035416919","display_name":"Tobias Czauderna","orcid":null},"institutions":[{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Tobias Czauderna","raw_affiliation_strings":["Faculty of Information Technology , Monash University , Melbourne , Australia"],"affiliations":[{"raw_affiliation_string":"Faculty of Information Technology , Monash University , Melbourne , Australia","institution_ids":["https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006798669","display_name":"U\u011fur Do\u011frus\u00f6z","orcid":"https://orcid.org/0000-0002-7153-0784"},"institutions":[{"id":"https://openalex.org/I168864056","display_name":"Bilkent University","ror":"https://ror.org/02vh8a032","country_code":"TR","type":"education","lineage":["https://openalex.org/I168864056"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Ugur Dogrusoz","raw_affiliation_strings":["Computer Engineering Department , Bilkent University , Ankara , 06800 , Turkey","i-Vis Research Lab , Bilkent University , Ankara , 06800 , Turkey"],"affiliations":[{"raw_affiliation_string":"Computer Engineering Department , Bilkent University , Ankara , 06800 , Turkey","institution_ids":["https://openalex.org/I168864056"]},{"raw_affiliation_string":"i-Vis Research Lab , Bilkent University , Ankara , 06800 , Turkey","institution_ids":["https://openalex.org/I168864056"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080558337","display_name":"Adrien Rougny","orcid":"https://orcid.org/0000-0002-2118-035X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Adrien Rougny","raw_affiliation_strings":["Biotechnology Research Institute for Drug Discovery , AIST , Tokyo , 135-0064 , Japan","Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL) , AIST , Tokyo , 169-8555 , Japan"],"affiliations":[{"raw_affiliation_string":"Biotechnology Research Institute for Drug Discovery , AIST , Tokyo , 135-0064 , Japan","institution_ids":[]},{"raw_affiliation_string":"Computational Bio Big-Data Open Innovation Laboratory (CBBD-OIL) , AIST , Tokyo , 169-8555 , Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065854572","display_name":"Andreas Dr\u00e4ger","orcid":"https://orcid.org/0000-0002-1240-5553"},"institutions":[{"id":"https://openalex.org/I4210115305","display_name":"German Center for Infection Research","ror":"https://ror.org/028s4q594","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210115305","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Dr\u00e4ger","raw_affiliation_strings":["Computational Systems Biology of Infection and Antimicrobial-Resistant Pathogens , Institute for Bioinformatics and Medical Informatics (IBMI) , T\u00fcbingen , 72076 , Germany","Department of Computer Science , University of T\u00fcbingen , T\u00fcbingen , 72076 , Germany","German Center for Infection Research (DZIF), Partner Site T\u00fcbingen , T\u00fcbingen, 72076 , Germany"],"affiliations":[{"raw_affiliation_string":"Computational Systems Biology of Infection and Antimicrobial-Resistant Pathogens , Institute for Bioinformatics and Medical Informatics (IBMI) , T\u00fcbingen , 72076 , Germany","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science , University of T\u00fcbingen , T\u00fcbingen , 72076 , Germany","institution_ids":["https://openalex.org/I8087733"]},{"raw_affiliation_string":"German Center for Infection Research (DZIF), Partner Site T\u00fcbingen , T\u00fcbingen, 72076 , Germany","institution_ids":["https://openalex.org/I4210115305"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019876939","display_name":"Vasundra Tour\u00e9","orcid":"https://orcid.org/0000-0003-4639-4431"},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Vasundra Tour\u00e9","raw_affiliation_strings":["Department of Biology , Norwegian University of Science and Technology (NTNU) , Trondheim , Norway"],"affiliations":[{"raw_affiliation_string":"Department of Biology , Norwegian University of Science and Technology (NTNU) , Trondheim , Norway","institution_ids":["https://openalex.org/I204778367"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044361124","display_name":"Alexander Mazein","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I113428412","display_name":"\u00c9cole Normale Sup\u00e9rieure de Lyon","ror":"https://ror.org/04zmssz18","country_code":"FR","type":"education","lineage":["https://openalex.org/I113428412","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I186903577","display_name":"University of Luxembourg","ror":"https://ror.org/036x5ad56","country_code":"LU","type":"education","lineage":["https://openalex.org/I186903577"]},{"id":"https://openalex.org/I4210161906","display_name":"Centre International de Recherche en Infectiologie","ror":"https://ror.org/059sz6q14","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I113428412","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210100596","https://openalex.org/I4210161906","https://openalex.org/I4405259976"]},{"id":"https://openalex.org/I4387930247","display_name":"European Institute for Systems Biology and Medicine","ror":"https://ror.org/04f927797","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I4387930247"]}],"countries":["FR","LU"],"is_corresponding":false,"raw_author_name":"Alexander Mazein","raw_affiliation_strings":["European Institute for Systems Biology and Medicine , CIRI UMR5308, CNRS-ENS-UCBL-INSERM, Universit\u00e9 de Lyon , Lyon , 69007 , France","Luxembourg Centre for Systems Biomedicine , University of Luxembourg , Belvaux , L-4367 , Luxembourg"],"affiliations":[{"raw_affiliation_string":"European Institute for Systems Biology and Medicine , CIRI UMR5308, CNRS-ENS-UCBL-INSERM, Universit\u00e9 de Lyon , Lyon , 69007 , France","institution_ids":["https://openalex.org/I4210161906","https://openalex.org/I100532134","https://openalex.org/I4387930247","https://openalex.org/I154526488","https://openalex.org/I1294671590","https://openalex.org/I113428412"]},{"raw_affiliation_string":"Luxembourg Centre for Systems Biomedicine , University of Luxembourg , Belvaux , L-4367 , Luxembourg","institution_ids":["https://openalex.org/I186903577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107139754","display_name":"Michael L. Blinov","orcid":"https://orcid.org/0000-0002-9363-9705"},"institutions":[{"id":"https://openalex.org/I75929689","display_name":"UConn Health","ror":"https://ror.org/02kzs4y22","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75929689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael L. Blinov","raw_affiliation_strings":["Center for Cell Analysis and Modeling , UConn Health , Farmington , CT, 06030 , USA"],"affiliations":[{"raw_affiliation_string":"Center for Cell Analysis and Modeling , UConn Health , Farmington , CT, 06030 , USA","institution_ids":["https://openalex.org/I75929689"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026945351","display_name":"Augustin Luna","orcid":"https://orcid.org/0000-0001-5709-371X"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Augustin Luna","raw_affiliation_strings":["Department of Cell Biology , Harvard Medical School , Boston , MA, 02115 , USA","cBio Center , Department of Data Sciences , Dana\u2013Farber Cancer Institute , Boston , MA , 02215 , USA"],"affiliations":[{"raw_affiliation_string":"Department of Cell Biology , Harvard Medical School , Boston , MA, 02115 , USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"cBio Center , Department of Data Sciences , Dana\u2013Farber Cancer Institute , Boston , MA , 02215 , USA","institution_ids":["https://openalex.org/I4210117453"]}]}],"institutions":[],"countries_distinct_count":7,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5026945351"],"corresponding_institution_ids":["https://openalex.org/I136199984","https://openalex.org/I4210117453"],"apc_list":null,"apc_paid":null,"fwci":2.0024,"has_fulltext":true,"cited_by_count":31,"citation_normalized_percentile":{"value":0.87113053,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"17","issue":"2-3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sbml","display_name":"SBML","score":0.96163409948349},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8470950126647949},{"id":"https://openalex.org/keywords/markup-language","display_name":"Markup language","score":0.7993077039718628},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.6060836911201477},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.5840436816215515},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4711056351661682},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4472191035747528},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4190328121185303},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.250422865152359},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2079201638698578},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20060080289840698},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08710643649101257}],"concepts":[{"id":"https://openalex.org/C87186988","wikidata":"https://www.wikidata.org/wiki/Q452197","display_name":"SBML","level":4,"score":0.96163409948349},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8470950126647949},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.7993077039718628},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.6060836911201477},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.5840436816215515},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4711056351661682},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4472191035747528},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4190328121185303},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.250422865152359},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2079201638698578},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20060080289840698},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08710643649101257}],"mesh":[{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1515/jib-2020-0016","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2020-0016","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2020-0016/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32568733","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32568733","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7756621","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7756621","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"J Integr Bioinform","raw_type":"Text"},{"id":"pmh:oai:monash.edu:publications/c3b416a0-86dc-499e-a221-009ce87c17ff","is_oa":true,"landing_page_url":"https://research.monash.edu/en/publications/c3b416a0-86dc-499e-a221-009ce87c17ff","pdf_url":null,"source":{"id":"https://openalex.org/S4306402625","display_name":"Monash University Research Portal (Monash University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I56590836","host_organization_name":"Monash University","host_organization_lineage":["https://openalex.org/I56590836"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bergmann , F T , Czauderna , T , Dogrusoz , U , Rougny , A , Dr\u00e4ger , A , Tour\u00e9 , V , Mazein , A , Blinov , M L &amp; Luna , A 2020 , ' Systems biology graphical notation markup language (SBGNML) version 0.3 ' , Journal of integrative bioinformatics , vol. 17 , no. 2-3 . https://doi.org/10.1515/jib-2020-0016","raw_type":"article"},{"id":"pmh:oai:doaj.org/article:f62318a5df25471a98b3f21d09eb1c76","is_oa":true,"landing_page_url":"https://doaj.org/article/f62318a5df25471a98b3f21d09eb1c76","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 17, Iss 2-3 (2020)","raw_type":"article"},{"id":"pmh:oai:ntnuopen.ntnu.no:11250/3033824","is_oa":true,"landing_page_url":"https://hdl.handle.net/11250/3033824","pdf_url":null,"source":{"id":"https://openalex.org/S4306401716","display_name":"Duo Research Archive (University of Oslo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184942183","host_organization_name":"University of Oslo","host_organization_lineage":["https://openalex.org/I184942183"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"0","raw_type":"info:eu-repo/semantics/other"},{"id":"pmh:oai:orbilu.uni.lu:10993/57477","is_oa":true,"landing_page_url":"https://orbilu.uni.lu/handle/10993/57477","pdf_url":null,"source":{"id":"https://openalex.org/S4306401815","display_name":"Open Repository and Bibliography (University of Luxembourg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I186903577","host_organization_name":"University of Luxembourg","host_organization_lineage":["https://openalex.org/I186903577"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, 17 (2-3) (2020-06-22)","raw_type":"peer reviewed"},{"id":"pmh:oai:repository.bilkent.edu.tr:11693/73769","is_oa":false,"landing_page_url":"http://hdl.handle.net/11693/73769","pdf_url":null,"source":{"id":"https://openalex.org/S4306400079","display_name":"Bilkent University Institutional Repository (Bilkent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I168864056","host_organization_name":"Bilkent University","host_organization_lineage":["https://openalex.org/I168864056"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of integrative bioinformatics","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1515/jib-2020-0016","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2020-0016","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2020-0016/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.46000000834465027,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3036988853.pdf","grobid_xml":"https://content.openalex.org/works/W3036988853.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W893557411","https://openalex.org/W1665355332","https://openalex.org/W1982659614","https://openalex.org/W2028133290","https://openalex.org/W2069157810","https://openalex.org/W2112068737","https://openalex.org/W2124419982","https://openalex.org/W2134185611","https://openalex.org/W2148312059","https://openalex.org/W2163993275","https://openalex.org/W2188979829","https://openalex.org/W2337774877","https://openalex.org/W2416349955","https://openalex.org/W2557241828","https://openalex.org/W2560036845","https://openalex.org/W2794274454","https://openalex.org/W2795410052","https://openalex.org/W2950329335","https://openalex.org/W2981350712","https://openalex.org/W4242902282","https://openalex.org/W4247910464","https://openalex.org/W4254464710","https://openalex.org/W6641496680","https://openalex.org/W6641506132","https://openalex.org/W6730018376","https://openalex.org/W6750010189"],"related_works":["https://openalex.org/W2082621456","https://openalex.org/W2981332207","https://openalex.org/W2100525485","https://openalex.org/W2040642413","https://openalex.org/W3048335229","https://openalex.org/W2146744007","https://openalex.org/W1546010648","https://openalex.org/W2150908245","https://openalex.org/W2211443823","https://openalex.org/W2043776573"],"abstract_inverted_index":{"This":[0],"document":[1],"defines":[2],"Version":[3],"0.3":[4],"Markup":[5,95],"Language":[6],"(ML)":[7],"support":[8,118],"for":[9,24,109,119],"the":[10,93,101,105,180],"Systems":[11],"Biology":[12],"Graphical":[13],"Notation":[14],"(SBGN),":[15],"a":[16,39,129,196],"set":[17],"of":[18,35,54,59,107,133,182],"three":[19],"complementary":[20],"visual":[21],"languages":[22,76],"developed":[23],"biochemists,":[25],"modelers,":[26],"and":[27,46,52,77,124,145,147,160,166,198],"computer":[28],"scientists.":[29],"SBGN":[30,70,151,165,183],"aims":[31],"at":[32,171],"representing":[33],"networks":[34],"biochemical":[36],"interactions":[37],"in":[38,184,195],"standard,":[40],"unambiguous":[41,199],"way":[42],"to":[43,65,67,74,88,135,178,191],"foster":[44],"efficient":[45,131],"accurate":[47],"representation,":[48],"visualization,":[49],"storage,":[50],"exchange,":[51],"reuse":[53],"information":[55],"on":[56,164],"all":[57],"kinds":[58],"biological":[60,193],"knowledge,":[61],"from":[62,100],"gene":[63],"regulation,":[64],"metabolism,":[66],"cellular":[68],"signaling.":[69],"is":[71,82],"defined":[72],"neutrally":[73],"programming":[75],"software":[78,168],"encoding;":[79],"however,":[80],"it":[81],"oriented":[83],"primarily":[84],"towards":[85],"allowing":[86],"models":[87],"be":[89],"encoded":[90],"using":[91],"XML,":[92],"eXtensible":[94],"Language.":[96],"The":[97],"notable":[98],"changes":[99,127],"previous":[102],"version":[103],"include":[104],"addition":[106],"attributes":[108],"better":[110],"specify":[111],"metadata":[112],"about":[113],"maps,":[114,121],"as":[115,117],"well":[116],"multiple":[120],"sub-maps,":[122],"colors,":[123],"annotations.":[125],"These":[126],"enable":[128],"more":[130,189],"exchange":[132],"data":[134],"other":[136],"commonly":[137],"used":[138],"systems":[139],"biology":[140],"formats":[141],"(e.":[142,152],"g.,":[143,153],"BioPAX":[144],"SBML)":[146],"between":[148],"tools":[149],"supporting":[150],"CellDesigner,":[154],"Newt,":[155],"Krayon,":[156],"SBGN-ED,":[157],"STON,":[158],"cd2sbgnml,":[159],"MINERVA).":[161],"More":[162],"details":[163],"related":[167],"are":[169],"available":[170],"http://sbgn.org.":[172],"With":[173],"this":[174],"effort,":[175],"we":[176],"hope":[177],"increase":[179],"adoption":[181],"bioinformatics":[185],"tools,":[186],"ultimately":[187],"enabling":[188],"researchers":[190],"visualize":[192],"knowledge":[194],"precise":[197],"manner.":[200]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":4}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
