{"id":"https://openalex.org/W2950653887","doi":"https://doi.org/10.1515/jib-2019-0025","title":"Synthetic Biology Open Language (SBOL) Version 2.3","display_name":"Synthetic Biology Open Language (SBOL) Version 2.3","publication_year":2019,"publication_date":"2019-06-13","ids":{"openalex":"https://openalex.org/W2950653887","doi":"https://doi.org/10.1515/jib-2019-0025","mag":"2950653887","pmid":"https://pubmed.ncbi.nlm.nih.gov/31199770"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2019-0025","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2019-0025","pdf_url":"https://www.degruyter.com/downloadpdf/journals/jib/16/2/article-20190025.pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://www.degruyter.com/downloadpdf/journals/jib/16/2/article-20190025.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047908665","display_name":"Curtis Madsen","orcid":"https://orcid.org/0000-0002-0254-0364"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Curtis Madsen","raw_affiliation_strings":["Boston University, Boston, MA, USA"],"affiliations":[{"raw_affiliation_string":"Boston University, Boston, MA, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053274991","display_name":"\u00c1ngel Go\u00f1i\u2010Moreno","orcid":"https://orcid.org/0000-0002-2097-2507"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Angel Go\u00f1i Moreno","raw_affiliation_strings":["Newcastle University, Newcastle, UK"],"affiliations":[{"raw_affiliation_string":"Newcastle University, Newcastle, UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077468443","display_name":"Prathwiraj Umesh","orcid":"https://orcid.org/0000-0001-6210-7514"},"institutions":[{"id":"https://openalex.org/I3129367976","display_name":"A P J Abdul Kalam Technological University","ror":"https://ror.org/04yn30r61","country_code":"IN","type":"education","lineage":["https://openalex.org/I3129367976"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Umesh P","raw_affiliation_strings":["Kerala Technological University, Thiruvananthapuram, India"],"affiliations":[{"raw_affiliation_string":"Kerala Technological University, Thiruvananthapuram, India","institution_ids":["https://openalex.org/I3129367976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036754392","display_name":"Zachary Palchick","orcid":null},"institutions":[{"id":"https://openalex.org/I4210147937","display_name":"Zogenix (United States)","ror":"https://ror.org/03ynh3q24","country_code":"US","type":"company","lineage":["https://openalex.org/I4210147937"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zachary Palchick","raw_affiliation_strings":["Zymergen, Emeryville, CA, USA"],"affiliations":[{"raw_affiliation_string":"Zymergen, Emeryville, CA, USA","institution_ids":["https://openalex.org/I4210147937"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082955901","display_name":"Nicholas Roehner","orcid":"https://orcid.org/0000-0003-4957-1552"},"institutions":[{"id":"https://openalex.org/I1306686416","display_name":"RTX (United States)","ror":"https://ror.org/0354t7b78","country_code":"US","type":"company","lineage":["https://openalex.org/I1306686416"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicholas Roehner","raw_affiliation_strings":["Raytheon BBN Technologies, Cambridge, MA, USA"],"affiliations":[{"raw_affiliation_string":"Raytheon BBN Technologies, Cambridge, MA, USA","institution_ids":["https://openalex.org/I1306686416"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053891044","display_name":"Christian Atallah","orcid":"https://orcid.org/0000-0002-4853-4189"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Christian Atallah","raw_affiliation_strings":["Newcastle University, Newcastle, UK"],"affiliations":[{"raw_affiliation_string":"Newcastle University, Newcastle, UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070268735","display_name":"Bryan Bartley","orcid":"https://orcid.org/0000-0002-1597-4022"},"institutions":[{"id":"https://openalex.org/I1306686416","display_name":"RTX (United States)","ror":"https://ror.org/0354t7b78","country_code":"US","type":"company","lineage":["https://openalex.org/I1306686416"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bryan Bartley","raw_affiliation_strings":["Raytheon BBN Technologies, Cambridge, MA, USA"],"affiliations":[{"raw_affiliation_string":"Raytheon BBN Technologies, Cambridge, MA, USA","institution_ids":["https://openalex.org/I1306686416"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009998609","display_name":"Kiri Choi","orcid":"https://orcid.org/0000-0002-0156-8410"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kiri Choi","raw_affiliation_strings":["University of Washington, Seattle, WA, USA"],"affiliations":[{"raw_affiliation_string":"University of Washington, Seattle, WA, USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042765353","display_name":"Robert Sidney Cox","orcid":"https://orcid.org/0000-0002-2009-6236"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Robert Sidney Cox","raw_affiliation_strings":["Prospect Bio, Brisbane, CA, USA"],"affiliations":[{"raw_affiliation_string":"Prospect Bio, Brisbane, CA, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000195963","display_name":"Thomas E. Gorochowski","orcid":"https://orcid.org/0000-0003-1702-786X"},"institutions":[{"id":"https://openalex.org/I36234482","display_name":"University of Bristol","ror":"https://ror.org/0524sp257","country_code":"GB","type":"education","lineage":["https://openalex.org/I36234482"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Thomas Gorochowski","raw_affiliation_strings":["University of Bristol, Bristol, UK"],"affiliations":[{"raw_affiliation_string":"University of Bristol, Bristol, UK","institution_ids":["https://openalex.org/I36234482"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037127624","display_name":"Raik Gr\u00fcnberg","orcid":"https://orcid.org/0000-0001-9532-6043"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Raik Gr\u00fcnberg","raw_affiliation_strings":["KAUST, Thuwal, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"KAUST, Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055196504","display_name":"Chris Macklin","orcid":null},"institutions":[{"id":"https://openalex.org/I4210093679","display_name":"Amyris (United States)","ror":"https://ror.org/00js7c390","country_code":"US","type":"company","lineage":["https://openalex.org/I4210093679"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chris Macklin","raw_affiliation_strings":["Amyris, Inc., Emeryville, CA, USA"],"affiliations":[{"raw_affiliation_string":"Amyris, Inc., Emeryville, CA, USA","institution_ids":["https://openalex.org/I4210093679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086364805","display_name":"James Alastair McLaughlin","orcid":"https://orcid.org/0000-0002-8361-2795"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"James McLaughlin","raw_affiliation_strings":["Newcastle University, Newcastle, UK"],"affiliations":[{"raw_affiliation_string":"Newcastle University, Newcastle, UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101055720","display_name":"Xianwei Meng","orcid":null},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xianwei Meng","raw_affiliation_strings":["DOE Joint Genome Institute, Walnut Creek, CA, USA"],"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Walnut Creek, CA, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028414498","display_name":"Tramy Nguyen","orcid":"https://orcid.org/0000-0002-8035-0259"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tramy Nguyen","raw_affiliation_strings":["University of Utah, Salt Lake City, UT, USA"],"affiliations":[{"raw_affiliation_string":"University of Utah, Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109242321","display_name":"Matthew Pocock","orcid":null},"institutions":[{"id":"https://openalex.org/I125680101","display_name":"Turing Institute","ror":"https://ror.org/02x2mw849","country_code":"GB","type":"facility","lineage":["https://openalex.org/I125680101"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Matthew Pocock","raw_affiliation_strings":["Turing Ate My Hamster, Ltd., Newcastle, UK"],"affiliations":[{"raw_affiliation_string":"Turing Ate My Hamster, Ltd., Newcastle, UK","institution_ids":["https://openalex.org/I125680101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029481422","display_name":"Meher Samineni","orcid":null},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Meher Samineni","raw_affiliation_strings":["University of Utah, Salt Lake City, UT, USA"],"affiliations":[{"raw_affiliation_string":"University of Utah, Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021538869","display_name":"James Scott-Brown","orcid":"https://orcid.org/0000-0001-5642-8346"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"James Scott-Brown","raw_affiliation_strings":["Imperial College, London, UK"],"affiliations":[{"raw_affiliation_string":"Imperial College, London, UK","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000230424","display_name":"Ysis Tarter","orcid":null},"institutions":[{"id":"https://openalex.org/I4210093679","display_name":"Amyris (United States)","ror":"https://ror.org/00js7c390","country_code":"US","type":"company","lineage":["https://openalex.org/I4210093679"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ysis Tarter","raw_affiliation_strings":["Amyris, Inc., Emeryville, CA, USA"],"affiliations":[{"raw_affiliation_string":"Amyris, Inc., Emeryville, CA, USA","institution_ids":["https://openalex.org/I4210093679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100612832","display_name":"Michael Zhang","orcid":"https://orcid.org/0000-0002-1084-6734"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Zhang","raw_affiliation_strings":["University of Utah, Salt Lake City, UT, USA"],"affiliations":[{"raw_affiliation_string":"University of Utah, Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004255982","display_name":"Zhen Zhang","orcid":"https://orcid.org/0000-0001-7253-0076"},"institutions":[{"id":"https://openalex.org/I121980950","display_name":"Utah State University","ror":"https://ror.org/00h6set76","country_code":"US","type":"education","lineage":["https://openalex.org/I121980950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhen Zhang","raw_affiliation_strings":["Utah State University, Logan, UT, USA"],"affiliations":[{"raw_affiliation_string":"Utah State University, Logan, UT, USA","institution_ids":["https://openalex.org/I121980950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072564435","display_name":"Zach Zundel","orcid":"https://orcid.org/0000-0003-1355-6721"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zach Zundel","raw_affiliation_strings":["University of Utah, Salt Lake City, UT, USA"],"affiliations":[{"raw_affiliation_string":"University of Utah, Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020446837","display_name":"Jacob Beal","orcid":"https://orcid.org/0000-0002-1663-5102"},"institutions":[{"id":"https://openalex.org/I1306686416","display_name":"RTX (United States)","ror":"https://ror.org/0354t7b78","country_code":"US","type":"company","lineage":["https://openalex.org/I1306686416"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jacob Beal","raw_affiliation_strings":["Raytheon BBN Technologies, Cambridge, MA, USA"],"affiliations":[{"raw_affiliation_string":"Raytheon BBN Technologies, Cambridge, MA, USA","institution_ids":["https://openalex.org/I1306686416"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110399445","display_name":"M.G. Bissell","orcid":null},"institutions":[{"id":"https://openalex.org/I4210093679","display_name":"Amyris (United States)","ror":"https://ror.org/00js7c390","country_code":"US","type":"company","lineage":["https://openalex.org/I4210093679"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Bissell","raw_affiliation_strings":["Amyris, Inc., Emeryville, CA, USA"],"affiliations":[{"raw_affiliation_string":"Amyris, Inc., Emeryville, CA, USA","institution_ids":["https://openalex.org/I4210093679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057992451","display_name":"Kevin Clancy","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kevin Clancy","raw_affiliation_strings":["BioCoder Consulting, Carlsbad, CA, USA"],"affiliations":[{"raw_affiliation_string":"BioCoder Consulting, Carlsbad, CA, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010618664","display_name":"John H. Gennari","orcid":"https://orcid.org/0000-0001-8254-4957"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John H. Gennari","raw_affiliation_strings":["University of Washington, Seattle, WA, USA"],"affiliations":[{"raw_affiliation_string":"University of Washington, Seattle, WA, USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028639846","display_name":"G\u00f6ksel M\u0131s\u0131rl\u0131","orcid":"https://orcid.org/0000-0002-2454-7188"},"institutions":[{"id":"https://openalex.org/I56007636","display_name":"Keele University","ror":"https://ror.org/00340yn33","country_code":"GB","type":"education","lineage":["https://openalex.org/I56007636"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Goksel Misirli","raw_affiliation_strings":["Keele University, Keele, Staffordshire, UK"],"affiliations":[{"raw_affiliation_string":"Keele University, Keele, Staffordshire, UK","institution_ids":["https://openalex.org/I56007636"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111386695","display_name":"Chris J. Myers","orcid":null},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chris Myers","raw_affiliation_strings":["University of Utah, Salt Lake City, UT, USA"],"affiliations":[{"raw_affiliation_string":"University of Utah, Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044567758","display_name":"Ernst Oberortner","orcid":"https://orcid.org/0000-0002-4287-5513"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ernst Oberortner","raw_affiliation_strings":["DOE Joint Genome Institute, Walnut Creek, CA, USA"],"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Walnut Creek, CA, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044484291","display_name":"Herbert M. Sauro","orcid":"https://orcid.org/0000-0002-3659-6817"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Herbert Sauro","raw_affiliation_strings":["University of Washington, Seattle, WA, USA"],"affiliations":[{"raw_affiliation_string":"University of Washington, Seattle, WA, USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089978830","display_name":"Anil Wipat","orcid":"https://orcid.org/0000-0001-7310-4191"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Anil Wipat","raw_affiliation_strings":["Newcastle University, Newcastle, UK"],"affiliations":[{"raw_affiliation_string":"Newcastle University, Newcastle, UK","institution_ids":["https://openalex.org/I84884186"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":31,"corresponding_author_ids":["https://openalex.org/A5020446837"],"corresponding_institution_ids":["https://openalex.org/I1306686416"],"apc_list":null,"apc_paid":null,"fwci":2.4906,"has_fulltext":true,"cited_by_count":38,"citation_normalized_percentile":{"value":0.900612,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"16","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/synthetic-biology","display_name":"Synthetic biology","score":0.8483474254608154},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.5985280871391296},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.59004145860672},{"id":"https://openalex.org/keywords/extension","display_name":"Extension (predicate logic)","score":0.5275539755821228},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5152983665466309},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5118178725242615},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.37448081374168396},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32975882291793823},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.283261239528656},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.25958895683288574},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14979097247123718}],"concepts":[{"id":"https://openalex.org/C191908910","wikidata":"https://www.wikidata.org/wiki/Q862838","display_name":"Synthetic biology","level":2,"score":0.8483474254608154},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.5985280871391296},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.59004145860672},{"id":"https://openalex.org/C2778029271","wikidata":"https://www.wikidata.org/wiki/Q5421931","display_name":"Extension (predicate logic)","level":2,"score":0.5275539755821228},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5152983665466309},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5118178725242615},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.37448081374168396},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32975882291793823},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.283261239528656},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.25958895683288574},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14979097247123718},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":9,"locations":[{"id":"doi:10.1515/jib-2019-0025","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2019-0025","pdf_url":"https://www.degruyter.com/downloadpdf/journals/jib/16/2/article-20190025.pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31199770","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31199770","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6798821","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6798821","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"J Integr Bioinform","raw_type":"Text"},{"id":"pmh:oai:research-information.bris.ac.uk:publications/c6363242-1bb6-471a-966b-2f6fcea7c0ac","is_oa":true,"landing_page_url":"https://research-information.bris.ac.uk/en/publications/c6363242-1bb6-471a-966b-2f6fcea7c0ac","pdf_url":"https://research-information.bris.ac.uk/files/202419889/_Journal_of_Integrative_Bioinformatics_Synthetic_Biology_Open_Language_SBOL_Version_2.3.pdf","source":{"id":"https://openalex.org/S7407055359","display_name":"Explore Bristol Research","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Madsen, C, Go\u00f1i Moreno, A, P, U, Palchick, Z, Roehner, N, Atallah, C, Bartley, B, Choi, K, Cox, R S, Gorochowski, T, Gr\u00fcnberg, R, Macklin, C, McLaughlin, J, Meng, X, Nguyen, T, Pocock, M, Samineni, M, Scott-Brown, J, Tarter, Y, Zhang, M, Zhang, Z, Zundel, Z, Beal, J, Bissell, M, Clancy, K, Gennari, J H, Misirli, G, Myers, C, Oberortner, E, Sauro, H & Wipat, A 2019, 'Synthetic Biology Open Language (SBOL) Version 2.3', Journal of Integrative Bioinformatics. https://doi.org/10.1515/jib-2019-0025","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:digitalcommons.usu.edu:ece_facpub-1241","is_oa":false,"landing_page_url":"https://digitalcommons.usu.edu/ece_facpub/237","pdf_url":null,"source":{"id":"https://openalex.org/S4377196327","display_name":"Digital Commons - USU (Utah State University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I121980950","host_organization_name":"Utah State University","host_organization_lineage":["https://openalex.org/I121980950"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Electrical and Computer Engineering Faculty Publications","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:d6c6e56ec2e94b8aa1847a07c537a2c4","is_oa":true,"landing_page_url":"https://doaj.org/article/d6c6e56ec2e94b8aa1847a07c537a2c4","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 16, Iss 2 (2019)","raw_type":"article"},{"id":"pmh:oai:eprints.keele.ac.uk:6497","is_oa":true,"landing_page_url":"http://eprints.keele.ac.uk/6497/1/%5BJournal%20of%20Integrative%20Bioinformatics%5D%20Synthetic%20Biology%20Open%20Language%20%28SBOL%29%20Version%202.3.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306402149","display_name":"Keele Research Repository (Keele University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I56007636","host_organization_name":"Keele University","host_organization_lineage":["https://openalex.org/I56007636"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/656407","is_oa":true,"landing_page_url":"http://hdl.handle.net/10754/656407","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:research-information.bris.ac.uk:openaire/c6363242-1bb6-471a-966b-2f6fcea7c0ac","is_oa":true,"landing_page_url":"https://hdl.handle.net/1983/c6363242-1bb6-471a-966b-2f6fcea7c0ac","pdf_url":null,"source":{"id":"https://openalex.org/S7407055359","display_name":"Explore Bristol Research","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Madsen, C, Go\u00f1i Moreno, A, P, U, Palchick, Z, Roehner, N, Atallah, C, Bartley, B, Choi, K, Cox, R S, Gorochowski, T, Gr\u00fcnberg, R, Macklin, C, McLaughlin, J, Meng, X, Nguyen, T, Pocock, M, Samineni, M, Scott-Brown, J, Tarter, Y, Zhang, M, Zhang, Z, Zundel, Z, Beal, J, Bissell, M, Clancy, K, Gennari, J H, Misirli, G, Myers, C, Oberortner, E, Sauro, H & Wipat, A 2019, 'Synthetic Biology Open Language (SBOL) Version 2.3', Journal of Integrative Bioinformatics. https://doi.org/10.1515/jib-2019-0025","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1515/jib-2019-0025","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2019-0025","pdf_url":"https://www.degruyter.com/downloadpdf/journals/jib/16/2/article-20190025.pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1015763213","display_name":null,"funder_award_id":"BB/L01386X/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G3767306467","display_name":null,"funder_award_id":"DBI-1356041","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6178872503","display_name":null,"funder_award_id":"1355909","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6450106791","display_name":null,"funder_award_id":"DBI-1355909","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G884521232","display_name":"Collaborative: ABI Development: Synthetic Biology Open Language Resource","funder_award_id":"1356041","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2950653887.pdf","grobid_xml":"https://content.openalex.org/works/W2950653887.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1969709265","https://openalex.org/W2033377040","https://openalex.org/W2044952215","https://openalex.org/W2060184615","https://openalex.org/W2091731123","https://openalex.org/W2134759932","https://openalex.org/W2150908245","https://openalex.org/W2170122529","https://openalex.org/W2316537542","https://openalex.org/W4256089495","https://openalex.org/W6642750163"],"related_works":["https://openalex.org/W2057769265","https://openalex.org/W2024161258","https://openalex.org/W1911418903","https://openalex.org/W2338895903","https://openalex.org/W3044523069","https://openalex.org/W19581480","https://openalex.org/W2136248167","https://openalex.org/W2126646394","https://openalex.org/W1987445442","https://openalex.org/W4211049090"],"abstract_inverted_index":{"Synthetic":[0],"biology":[1,62,166],"builds":[2,102],"upon":[3,103],"the":[4,20,51,74,195],"techniques":[5],"and":[6,12,39,76,132,139,147,184,186],"successes":[7],"of":[8,22,37,53,78,99,123,141,154,164,176,179,191,197],"genetics,":[9],"molecular":[10],"biology,":[11,84],"metabolic":[13],"engineering":[14,17],"by":[15,90],"applying":[16],"principles":[18],"to":[19,44,49,72,136,194],"design":[21,80,155],"biological":[23,79],"systems.":[24],"The":[25,60,157],"field":[26],"still":[27],"faces":[28],"substantial":[29],"challenges,":[30],"including":[31],"long":[32],"development":[33],"times,":[34],"high":[35],"rates":[36],"failure,":[38],"poor":[40],"reproducibility.":[41],"One":[42],"method":[43],"ameliorate":[45],"these":[46],"problems":[47],"is":[48],"improve":[50],"exchange":[52,77],"information":[54,81],"about":[55],"designed":[56],"systems":[57],"between":[58],"laboratories.":[59],"synthetic":[61,83,165],"open":[63],"language":[64],"(SBOL)":[65],"has":[66],"been":[67],"developed":[68],"as":[69,129],"a":[70,86,177,189],"standard":[71],"support":[73,137],"specification":[75],"in":[82,107,112],"filling":[85],"need":[87],"not":[88],"satisfied":[89],"other":[91],"pre-existing":[92],"standards.":[93],"This":[94],"document":[95],"details":[96],"version":[97,104,159],"2.3.0":[98,120],"SBOL,":[100],"which":[101],"2.2.0":[105],"published":[106],"last":[108],"year's":[109],"JIB":[110],"Standards":[111],"Systems":[113],"Biology":[114],"special":[115],"issue.":[116],"In":[117],"particular,":[118],"SBOL":[119],"includes":[121,161],"means":[122],"succinctly":[124],"representing":[125],"sequence":[126],"modifications,":[127],"such":[128],"insertion,":[130],"deletion,":[131],"replacement,":[133],"an":[134,148],"extension":[135,149],"organization":[138],"attachment":[140],"experimental":[142],"data":[143],"derived":[144],"from":[145],"designs,":[146],"for":[150,170],"describing":[151],"numerical":[152],"parameters":[153],"elements.":[156],"new":[158],"also":[160],"specifying":[162],"types":[163],"activities,":[167],"unambiguous":[168],"locations":[169],"sequences":[171],"with":[172],"multiple":[173],"encodings,":[174],"refinement":[175],"number":[178,190],"validation":[180],"rules,":[181],"improved":[182],"figures":[183],"examples,":[185],"clarification":[187],"on":[188],"issues":[192],"related":[193],"use":[196],"external":[198],"ontology":[199],"terms.":[200]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
