{"id":"https://openalex.org/W2905690488","doi":"https://doi.org/10.1515/jib-2018-0068","title":"A Model Integration Pipeline for the Improvement of Human Genome-Scale Metabolic Reconstructions","display_name":"A Model Integration Pipeline for the Improvement of Human Genome-Scale Metabolic Reconstructions","publication_year":2018,"publication_date":"2018-12-20","ids":{"openalex":"https://openalex.org/W2905690488","doi":"https://doi.org/10.1515/jib-2018-0068","mag":"2905690488","pmid":"https://pubmed.ncbi.nlm.nih.gov/30808160"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2018-0068","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2018-0068","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2018-0068/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://www.degruyter.com/document/doi/10.1515/jib-2018-0068/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008693461","display_name":"V\u00edtor Vieira","orcid":"https://orcid.org/0000-0001-9604-9586"},"institutions":[{"id":"https://openalex.org/I99682543","display_name":"University of Minho","ror":"https://ror.org/037wpkx04","country_code":"PT","type":"education","lineage":["https://openalex.org/I99682543"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"V\u00edtor Vieira","raw_affiliation_strings":["Center of Biological Engineering, University of Minho \u2013 Campus de Gualtar , Braga , Portugal"],"raw_orcid":"https://orcid.org/0000-0001-9604-9586","affiliations":[{"raw_affiliation_string":"Center of Biological Engineering, University of Minho \u2013 Campus de Gualtar , Braga , Portugal","institution_ids":["https://openalex.org/I99682543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100785146","display_name":"Jorge Ferreira","orcid":"https://orcid.org/0000-0002-5132-1651"},"institutions":[{"id":"https://openalex.org/I99682543","display_name":"University of Minho","ror":"https://ror.org/037wpkx04","country_code":"PT","type":"education","lineage":["https://openalex.org/I99682543"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Jorge Ferreira","raw_affiliation_strings":["Center of Biological Engineering, University of Minho \u2013 Campus de Gualtar , Braga , Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Biological Engineering, University of Minho \u2013 Campus de Gualtar , Braga , Portugal","institution_ids":["https://openalex.org/I99682543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066098501","display_name":"R\u00faben Rodrigues","orcid":"https://orcid.org/0000-0002-8432-8243"},"institutions":[{"id":"https://openalex.org/I99682543","display_name":"University of Minho","ror":"https://ror.org/037wpkx04","country_code":"PT","type":"education","lineage":["https://openalex.org/I99682543"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"R\u00faben Rodrigues","raw_affiliation_strings":["Center of Biological Engineering, University of Minho \u2013 Campus de Gualtar , Braga , Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Biological Engineering, University of Minho \u2013 Campus de Gualtar , Braga , Portugal","institution_ids":["https://openalex.org/I99682543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044587877","display_name":"Filipe Liu","orcid":"https://orcid.org/0000-0001-8701-2984"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Filipe Liu","raw_affiliation_strings":["Argonne National Laboratory , Lemont, IL , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory , Lemont, IL , USA","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040524717","display_name":"Miguel Rocha","orcid":"https://orcid.org/0000-0001-8439-8172"},"institutions":[{"id":"https://openalex.org/I99682543","display_name":"University of Minho","ror":"https://ror.org/037wpkx04","country_code":"PT","type":"education","lineage":["https://openalex.org/I99682543"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Miguel Rocha","raw_affiliation_strings":["Center of Biological Engineering, University of Minho \u2013 Campus de Gualtar , Braga , Portugal"],"raw_orcid":"https://orcid.org/0000-0001-8439-8172","affiliations":[{"raw_affiliation_string":"Center of Biological Engineering, University of Minho \u2013 Campus de Gualtar , Braga , Portugal","institution_ids":["https://openalex.org/I99682543"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5008693461"],"corresponding_institution_ids":["https://openalex.org/I99682543"],"apc_list":null,"apc_paid":null,"fwci":0.2784,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.58623443,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"16","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7088345289230347},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.6543785333633423},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5841115713119507},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5207095742225647},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.4893590807914734},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4208694398403168},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41790422797203064},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.41746723651885986},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4124146103858948},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3788616359233856},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2050795555114746},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.0988803505897522}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7088345289230347},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.6543785333633423},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5841115713119507},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5207095742225647},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.4893590807914734},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4208694398403168},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41790422797203064},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.41746723651885986},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4124146103858948},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3788616359233856},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2050795555114746},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0988803505897522},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1515/jib-2018-0068","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2018-0068","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2018-0068/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30808160","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30808160","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:repositorium.uminho.pt:1822/59342","is_oa":true,"landing_page_url":"https://hdl.handle.net/1822/59342","pdf_url":null,"source":null,"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:osti.gov:1629389","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1629389","pdf_url":"https://www.osti.gov/servlets/purl/1629389","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:doaj.org/article:41218589ecc54979b78c9e8cfbed3b29","is_oa":true,"landing_page_url":"https://doaj.org/article/41218589ecc54979b78c9e8cfbed3b29","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 16, Iss 1, Pp 559-71 (2018)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6798860","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6798860","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Integr Bioinform","raw_type":"Text"},{"id":"pmh:oai:repositorium.sdum.uminho.pt:1822/59342","is_oa":true,"landing_page_url":"http://hdl.handle.net/1822/59342","pdf_url":null,"source":{"id":"https://openalex.org/S4306402433","display_name":"Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1515/jib-2018-0068","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2018-0068","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2018-0068/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1167214205","display_name":null,"funder_award_id":"COMPETE","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G1340927815","display_name":null,"funder_award_id":"501100001871","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G1516346500","display_name":null,"funder_award_id":"01-0145","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G1578237752","display_name":null,"funder_award_id":"COMPETE","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G1763632427","display_name":null,"funder_award_id":"POCI-01-0145","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G2534777963","display_name":null,"funder_award_id":"POCI-01-0145-FEDER-006684","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G274581676","display_name":null,"funder_award_id":"POCI-01","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G2905247347","display_name":null,"funder_award_id":"UID/BIO/04469","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G344822066","display_name":null,"funder_award_id":"NORTE-01-0145-FEDER-000004","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G3491971210","display_name":null,"funder_award_id":"COMPETE 2020","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G3838636553","display_name":null,"funder_award_id":"-01-0247-","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G3920919537","display_name":null,"funder_award_id":"10.13039/501100001871","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G3979008744","display_name":null,"funder_award_id":"SFRH/BD/118657/2016","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G4176497637","display_name":null,"funder_award_id":"COMPETE 2020","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G4455079242","display_name":null,"funder_award_id":"POCI-01-","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G5224927334","display_name":null,"funder_award_id":"POCI-01-","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G5256422550","display_name":null,"funder_award_id":"UID/BIO/04469/2013","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G5454278309","display_name":null,"funder_award_id":"/2017","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G6469001316","display_name":null,"funder_award_id":"UID/BIO/04469","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G6623037509","display_name":null,"funder_award_id":"POCI-01-0145-FEDER-006684","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G7142320195","display_name":null,"funder_award_id":"UID/BIO/04469/2013 unit","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G7584003722","display_name":null,"funder_award_id":"NORTE-01-0145","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G836519787","display_name":null,"funder_award_id":"UID/BIO/04469/2013","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G8862270368","display_name":null,"funder_award_id":"POCI-01-0145-FEDER","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"},{"id":"https://openalex.org/G8884816653","display_name":null,"funder_award_id":"POCI-01-0145-FEDER","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G8928600714","display_name":null,"funder_award_id":"NORTE-01-0145-FEDER-000004","funder_id":"https://openalex.org/F4320334779","funder_display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia"}],"funders":[{"id":"https://openalex.org/F4320334779","display_name":"Funda\u00e7\u00e3o para a Ci\u00eancia e a Tecnologia","ror":"https://ror.org/00snfqn58"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2905690488.pdf","grobid_xml":"https://content.openalex.org/works/W2905690488.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1575277508","https://openalex.org/W1869952022","https://openalex.org/W1969067437","https://openalex.org/W2009453329","https://openalex.org/W2036169641","https://openalex.org/W2060894663","https://openalex.org/W2067094344","https://openalex.org/W2068065441","https://openalex.org/W2104108767","https://openalex.org/W2132218677","https://openalex.org/W2140611297","https://openalex.org/W2148112408","https://openalex.org/W2163841023","https://openalex.org/W2177317049","https://openalex.org/W2418056440","https://openalex.org/W2534303219","https://openalex.org/W2559588208","https://openalex.org/W2767683865","https://openalex.org/W2767891136","https://openalex.org/W2789128799","https://openalex.org/W2792790130","https://openalex.org/W2950173838"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W4378651134","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2295598435","https://openalex.org/W4229599664","https://openalex.org/W2030404924"],"abstract_inverted_index":{"Metabolism":[0],"has":[1],"been":[2,34],"a":[3,42,121,178],"major":[4],"field":[5],"of":[6,45,61,75,104,130,140,151,177,182],"study":[7],"in":[8,17,52],"the":[9,59,73,96,102,147,175],"last":[10],"years,":[11],"mainly":[12],"due":[13,25],"to":[14,26,39,87],"its":[15,27],"importance":[16],"understanding":[18,44],"cell":[19],"physiology":[20],"and":[21,55,68,81,100,108,113,149],"certain":[22],"disease":[23],"phenotypes":[24],"deregulation.":[28],"Genome-scale":[29],"metabolic":[30],"models":[31],"(GSMMs)":[32],"have":[33,57],"established":[35],"as":[36,72,157,159],"important":[37],"tools":[38],"help":[40],"achieve":[41],"better":[43],"human":[46,63,98,183],"metabolism.":[47,184],"Towards":[48],"this":[49,155],"aim,":[50],"advances":[51],"systems":[53],"biology":[54],"bioinformatics":[56],"allowed":[58],"reconstruction":[60],"several":[62,141],"GSMMs,":[64,90],"although":[65],"some":[66],"limitations":[67],"challenges":[69],"remain,":[70],"such":[71],"lack":[74],"external":[76,105],"identifiers":[77,107],"for":[78,110],"both":[79,111],"metabolites":[80,112,117,131],"reactions.":[82,114],"A":[83],"pipeline":[84],"was":[85,118,144],"developed":[86],"integrate":[88],"multiple":[89],"starting":[91],"by":[92],"retrieving":[93],"information":[94],"from":[95,116,166],"main":[97],"GSMMs":[99,143],"evaluating":[101],"presence":[103],"database":[106,123,136],"annotations":[109],"Information":[115],"included":[119],"into":[120],"graph":[122],"with":[124],"omics":[125],"data":[126],"repositories,":[127],"allowing":[128,146],"clustering":[129],"through":[132],"their":[133],"similarity":[134],"regarding":[135],"cross-referencing.":[137],"Metabolite":[138],"annotation":[139],"older":[142],"enriched,":[145],"identification":[148],"integration":[150],"common":[152],"entities.":[153],"Using":[154],"information,":[156],"well":[158],"other":[160],"metrics,":[161],"we":[162],"successfully":[163],"integrated":[164],"reactions":[165],"these":[167],"models.":[168],"These":[169],"methods":[170],"can":[171],"be":[172],"leveraged":[173],"towards":[174],"creation":[176],"unified":[179],"consensus":[180],"model":[181]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-05-17T08:19:37.847499","created_date":"2025-10-10T00:00:00"}
