{"id":"https://openalex.org/W2891912956","doi":"https://doi.org/10.1515/jib-2018-0018","title":"Modeling and Simulating the Aerobic Carbon Metabolism of a Green Microalga Using Petri Nets and New Concepts of VANESA","display_name":"Modeling and Simulating the Aerobic Carbon Metabolism of a Green Microalga Using Petri Nets and New Concepts of VANESA","publication_year":2018,"publication_date":"2018-09-01","ids":{"openalex":"https://openalex.org/W2891912956","doi":"https://doi.org/10.1515/jib-2018-0018","mag":"2891912956","pmid":"https://pubmed.ncbi.nlm.nih.gov/30218605"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2018-0018","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2018-0018","pdf_url":"https://www.degruyter.com/downloadpdf/journals/jib/15/3/article-20180018.pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://www.degruyter.com/downloadpdf/journals/jib/15/3/article-20180018.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018943758","display_name":"Christoph Brinkrolf","orcid":null},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Christoph Brinkrolf","raw_affiliation_strings":["Bielefeld University , Faculty of Technology, Bioinformatics Department , Bielefeld , Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bielefeld University , Faculty of Technology, Bioinformatics Department , Bielefeld , Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091546829","display_name":"Nadja A. Henke","orcid":"https://orcid.org/0000-0002-1304-6310"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nadja A. Henke","raw_affiliation_strings":["Bielefeld University , Faculty of Biology and CeBiTec, Genetics of Prokaryotes , Bielefeld , Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bielefeld University , Faculty of Biology and CeBiTec, Genetics of Prokaryotes , Bielefeld , Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017418150","display_name":"Lennart Ochel","orcid":"https://orcid.org/0000-0001-6443-8579"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]},{"id":"https://openalex.org/I102134673","display_name":"Link\u00f6ping University","ror":"https://ror.org/05ynxx418","country_code":"SE","type":"education","lineage":["https://openalex.org/I102134673"]}],"countries":["DE","SE"],"is_corresponding":false,"raw_author_name":"Lennart Ochel","raw_affiliation_strings":["Bielefeld University , Faculty of Technology, Bioinformatics Department , Bielefeld , Germany","Link\u00f6ping University , Department of Computer and Information Science , Link\u00f6ping , Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bielefeld University , Faculty of Technology, Bioinformatics Department , Bielefeld , Germany","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"Link\u00f6ping University , Department of Computer and Information Science , Link\u00f6ping , Sweden","institution_ids":["https://openalex.org/I102134673"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044478520","display_name":"Boas Pucker","orcid":"https://orcid.org/0000-0002-3321-7471"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["DE","GB"],"is_corresponding":false,"raw_author_name":"Boas Pucker","raw_affiliation_strings":["Bielefeld University , Faculty of Biology and CeBiTec, Genome Research , Bielefeld , Germany","University of Cambridge , Department of PlantSciences, Evolution and Diversity , Cambridge , UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bielefeld University , Faculty of Biology and CeBiTec, Genome Research , Bielefeld , Germany","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"University of Cambridge , Department of PlantSciences, Evolution and Diversity , Cambridge , UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023105188","display_name":"Olaf Kruse","orcid":"https://orcid.org/0000-0001-9874-382X"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Olaf Kruse","raw_affiliation_strings":["Bielefeld University , Faculty of Biology and CeBiTec, Algae Biotechnology and Bioenergy , Bielefeld , Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bielefeld University , Faculty of Biology and CeBiTec, Algae Biotechnology and Bioenergy , Bielefeld , Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066420541","display_name":"Petra Lutter","orcid":null},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Petra Lutter","raw_affiliation_strings":["Bielefeld University , Faculty of Biology and CeBiTec, Proteome and Metabolome Research , Bielefeld , Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bielefeld University , Faculty of Biology and CeBiTec, Proteome and Metabolome Research , Bielefeld , Germany","institution_ids":["https://openalex.org/I20121455"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5018943758"],"corresponding_institution_ids":["https://openalex.org/I20121455"],"apc_list":null,"apc_paid":null,"fwci":0.3712,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.61021602,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":96},"biblio":{"volume":"15","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13286","display_name":"Modeling and Simulation Systems","score":0.979200005531311,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/petri-net","display_name":"Petri net","score":0.8077245950698853},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7302000522613525},{"id":"https://openalex.org/keywords/formalism","display_name":"Formalism (music)","score":0.6891497373580933},{"id":"https://openalex.org/keywords/modelica","display_name":"Modelica","score":0.6619066596031189},{"id":"https://openalex.org/keywords/compiler","display_name":"Compiler","score":0.5824843049049377},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.5265945196151733},{"id":"https://openalex.org/keywords/modeling-and-simulation","display_name":"Modeling and simulation","score":0.5196338891983032},{"id":"https://openalex.org/keywords/chlamydomonas-reinhardtii","display_name":"Chlamydomonas reinhardtii","score":0.5178363919258118},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.46960222721099854},{"id":"https://openalex.org/keywords/simulation","display_name":"Simulation","score":0.22793912887573242},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1520092487335205},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.10805156826972961}],"concepts":[{"id":"https://openalex.org/C38677869","wikidata":"https://www.wikidata.org/wiki/Q724168","display_name":"Petri net","level":2,"score":0.8077245950698853},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7302000522613525},{"id":"https://openalex.org/C73301696","wikidata":"https://www.wikidata.org/wiki/Q5469984","display_name":"Formalism (music)","level":3,"score":0.6891497373580933},{"id":"https://openalex.org/C37785467","wikidata":"https://www.wikidata.org/wiki/Q385325","display_name":"Modelica","level":2,"score":0.6619066596031189},{"id":"https://openalex.org/C169590947","wikidata":"https://www.wikidata.org/wiki/Q47506","display_name":"Compiler","level":2,"score":0.5824843049049377},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.5265945196151733},{"id":"https://openalex.org/C167343916","wikidata":"https://www.wikidata.org/wiki/Q6888384","display_name":"Modeling and simulation","level":2,"score":0.5196338891983032},{"id":"https://openalex.org/C2777727519","wikidata":"https://www.wikidata.org/wiki/Q291827","display_name":"Chlamydomonas reinhardtii","level":4,"score":0.5178363919258118},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.46960222721099854},{"id":"https://openalex.org/C44154836","wikidata":"https://www.wikidata.org/wiki/Q45045","display_name":"Simulation","level":1,"score":0.22793912887573242},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1520092487335205},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.10805156826972961},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C558565934","wikidata":"https://www.wikidata.org/wiki/Q2743","display_name":"Musical","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002244","descriptor_name":"Carbon","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002244","descriptor_name":"Carbon","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002244","descriptor_name":"Carbon","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016825","descriptor_name":"Chlamydomonas reinhardtii","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016825","descriptor_name":"Chlamydomonas reinhardtii","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016825","descriptor_name":"Chlamydomonas reinhardtii","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1515/jib-2018-0018","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2018-0018","pdf_url":"https://www.degruyter.com/downloadpdf/journals/jib/15/3/article-20180018.pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30218605","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30218605","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:DiVA.org:liu-156014","is_oa":true,"landing_page_url":"http://urn.kb.se/resolve?urn=urn:nbn:se:liu:diva-156014","pdf_url":null,"source":{"id":"https://openalex.org/S4306401559","display_name":"KTH Publication Database DiVA (KTH Royal Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article in journal"},{"id":"pmh:oai:doaj.org/article:5364524a2a98421da125b001ab6a4515","is_oa":true,"landing_page_url":"https://doaj.org/article/5364524a2a98421da125b001ab6a4515","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 15, Iss 3, Pp 389-404 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5328685","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6340121","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pub.uni-bielefeld.de:2931064","is_oa":true,"landing_page_url":"https://pub.uni-bielefeld.de/record/2931064","pdf_url":null,"source":{"id":"https://openalex.org/S4306401670","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"http://purl.org/coar/resource_type/c_6501"}],"best_oa_location":{"id":"doi:10.1515/jib-2018-0018","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2018-0018","pdf_url":"https://www.degruyter.com/downloadpdf/journals/jib/15/3/article-20180018.pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2891912956.pdf","grobid_xml":"https://content.openalex.org/works/W2891912956.grobid-xml"},"referenced_works_count":62,"referenced_works":["https://openalex.org/W95898642","https://openalex.org/W647473889","https://openalex.org/W649260889","https://openalex.org/W1494647898","https://openalex.org/W1505489763","https://openalex.org/W1505999767","https://openalex.org/W1532286245","https://openalex.org/W1562579131","https://openalex.org/W1573621493","https://openalex.org/W1575666547","https://openalex.org/W1738677317","https://openalex.org/W1774749224","https://openalex.org/W1966294372","https://openalex.org/W1969914617","https://openalex.org/W1970337745","https://openalex.org/W1974161639","https://openalex.org/W1989357093","https://openalex.org/W1990732295","https://openalex.org/W1998767819","https://openalex.org/W2002635898","https://openalex.org/W2005123786","https://openalex.org/W2005503515","https://openalex.org/W2008294451","https://openalex.org/W2017551827","https://openalex.org/W2025192563","https://openalex.org/W2032337360","https://openalex.org/W2034887334","https://openalex.org/W2058036584","https://openalex.org/W2091507629","https://openalex.org/W2095867585","https://openalex.org/W2102919205","https://openalex.org/W2104855667","https://openalex.org/W2105713372","https://openalex.org/W2109971160","https://openalex.org/W2111652881","https://openalex.org/W2113355185","https://openalex.org/W2116460290","https://openalex.org/W2117812417","https://openalex.org/W2118109148","https://openalex.org/W2118969904","https://openalex.org/W2121282269","https://openalex.org/W2122863289","https://openalex.org/W2152375584","https://openalex.org/W2160418287","https://openalex.org/W2165253681","https://openalex.org/W2165476125","https://openalex.org/W2169332573","https://openalex.org/W2171594815","https://openalex.org/W2267177170","https://openalex.org/W2314401031","https://openalex.org/W2334999322","https://openalex.org/W2337640397","https://openalex.org/W2345264411","https://openalex.org/W2412839122","https://openalex.org/W2499393440","https://openalex.org/W2513479977","https://openalex.org/W2617840951","https://openalex.org/W2741460151","https://openalex.org/W2775544670","https://openalex.org/W2799055780","https://openalex.org/W4246087521","https://openalex.org/W4300591351"],"related_works":["https://openalex.org/W2000685434","https://openalex.org/W2347397158","https://openalex.org/W2362699659","https://openalex.org/W2028781436","https://openalex.org/W2186537181","https://openalex.org/W2032823921","https://openalex.org/W2384334968","https://openalex.org/W2028470494","https://openalex.org/W2378045007","https://openalex.org/W2137634858"],"abstract_inverted_index":{"In":[0],"this":[1],"work":[2],"we":[3],"present":[4],"new":[5],"concepts":[6],"of":[7,55,59,64],"VANESA,":[8,97],"a":[9,20,53,90],"tool":[10],"for":[11,95,106],"modeling":[12,50,75],"and":[13,27,34,40,42,72,84,93,109],"simulation":[14,85],"in":[15],"systems":[16],"biology.":[17],"We":[18],"provide":[19],"convenient":[21],"way":[22],"to":[23],"handle":[24],"mathematical":[25],"expressions":[26],"take":[28],"physical":[29,47],"units":[30],"into":[31],"account.":[32],"Simulation":[33],"result":[35],"management":[36],"has":[37],"been":[38],"improved,":[39],"syntax":[41],"consistency":[43],"checks,":[44],"based":[45,78],"on":[46,79],"units,":[48],"reduce":[49],"errors.":[51],"As":[52],"proof":[54],"concept,":[56],"essential":[57],"components":[58],"the":[60,65],"aerobic":[61],"carbon":[62],"metabolism":[63],"green":[66],"microalga":[67],"Chlamydomonas":[68],"reinhardtii":[69],"are":[70],"modeled":[71],"simulated.":[73],"The":[74],"process":[76],"is":[77,86,102,110],"xHPN":[80],"Petri":[81],"net":[82],"formalism":[83],"performed":[87],"with":[88],"OpenModelica,":[89,101],"powerful":[91],"environment":[92],"compiler":[94],"Modelica.":[96],"as":[98,100],"well":[99],"open":[103],"source,":[104],"free-of-charge":[105],"non-commercial":[107],"use,":[108],"available":[111],"at:":[112],"http://agbi.techfak.uni-bielefeld.de/vanesa.":[113]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
