{"id":"https://openalex.org/W2877867551","doi":"https://doi.org/10.1515/jib-2018-0006","title":"MinOmics, an Integrative and Immersive Tool for Multi-Omics Analysis","display_name":"MinOmics, an Integrative and Immersive Tool for Multi-Omics Analysis","publication_year":2018,"publication_date":"2018-06-01","ids":{"openalex":"https://openalex.org/W2877867551","doi":"https://doi.org/10.1515/jib-2018-0006","mag":"2877867551","pmid":"https://pubmed.ncbi.nlm.nih.gov/29927748"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2018-0006","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2018-0006","pdf_url":"https://www.degruyter.com/downloadpdf/journals/jib/15/2/article-20180006.pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://www.degruyter.com/downloadpdf/journals/jib/15/2/article-20180006.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062673132","display_name":"Alexandre Maes","orcid":"https://orcid.org/0000-0002-7966-1340"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210107423","display_name":"Institut de Biologie Physico-Chimique","ror":"https://ror.org/01na0pb61","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210107423"]},{"id":"https://openalex.org/I4210166586","display_name":"Laboratoire de Biologie Mol\u00e9culaire et Cellulaire des Eucaryotes","ror":"https://ror.org/05mx55f96","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210166586"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Alexandre Maes","raw_affiliation_strings":["Laboratoire de Biologie Mol\u00e9culaire et Cellulaire des Eucaryotes, Institut de Biologie Physico-Chimique, UMR8226, CNRS, Sorbonne Universit\u00e9, 13 rue Pierre et Marie Curie , 75005, Paris , France"],"affiliations":[{"raw_affiliation_string":"Laboratoire de Biologie Mol\u00e9culaire et Cellulaire des Eucaryotes, Institut de Biologie Physico-Chimique, UMR8226, CNRS, Sorbonne Universit\u00e9, 13 rue Pierre et Marie Curie , 75005, Paris , France","institution_ids":["https://openalex.org/I4210107423","https://openalex.org/I4210166586","https://openalex.org/I39804081","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060759028","display_name":"Xavier Martinez","orcid":"https://orcid.org/0000-0003-2630-6393"},"institutions":[{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210094297","display_name":"Laboratoire de Biochimie Th\u00e9orique","ror":"https://ror.org/00nvjgv40","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4210094297","https://openalex.org/I4210128300"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2746051580","display_name":"Universit\u00e9 Paris Sciences et Lettres","ror":"https://ror.org/013cjyk83","country_code":"FR","type":"education","lineage":["https://openalex.org/I2746051580"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210091437","display_name":"Sorbonne Paris Cit\u00e9","ror":"https://ror.org/001z21q04","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210091437"]},{"id":"https://openalex.org/I4210107423","display_name":"Institut de Biologie Physico-Chimique","ror":"https://ror.org/01na0pb61","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210107423"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Xavier Martinez","raw_affiliation_strings":["Laboratoire de Biochimie Th\u00e9orique, CNRS, UPR9080, Institut de Biologie Physico-Chimique , Univ Paris Diderot, Sorbonne Paris Cit\u00e9, PSL Research University , 13 rue Pierre et Marie Curie , 75005, Paris , France"],"affiliations":[{"raw_affiliation_string":"Laboratoire de Biochimie Th\u00e9orique, CNRS, UPR9080, Institut de Biologie Physico-Chimique , Univ Paris Diderot, Sorbonne Paris Cit\u00e9, PSL Research University , 13 rue Pierre et Marie Curie , 75005, Paris , France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I1294671590","https://openalex.org/I4210091437","https://openalex.org/I39804081","https://openalex.org/I4210094297","https://openalex.org/I2746051580","https://openalex.org/I4210107423"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030610216","display_name":"Karen Druart","orcid":"https://orcid.org/0000-0002-9572-7741"},"institutions":[{"id":"https://openalex.org/I2746051580","display_name":"Universit\u00e9 Paris Sciences et Lettres","ror":"https://ror.org/013cjyk83","country_code":"FR","type":"education","lineage":["https://openalex.org/I2746051580"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210107423","display_name":"Institut de Biologie Physico-Chimique","ror":"https://ror.org/01na0pb61","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210107423"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210091437","display_name":"Sorbonne Paris Cit\u00e9","ror":"https://ror.org/001z21q04","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210091437"]},{"id":"https://openalex.org/I4210094297","display_name":"Laboratoire de Biochimie Th\u00e9orique","ror":"https://ror.org/00nvjgv40","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4210094297","https://openalex.org/I4210128300"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Karen Druart","raw_affiliation_strings":["Laboratoire de Biochimie Th\u00e9orique, CNRS, UPR9080, Institut de Biologie Physico-Chimique , Univ Paris Diderot, Sorbonne Paris Cit\u00e9, PSL Research University , 13 rue Pierre et Marie Curie , 75005, Paris , France"],"affiliations":[{"raw_affiliation_string":"Laboratoire de Biochimie Th\u00e9orique, CNRS, UPR9080, Institut de Biologie Physico-Chimique , Univ Paris Diderot, Sorbonne Paris Cit\u00e9, PSL Research University , 13 rue Pierre et Marie Curie , 75005, Paris , France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I1294671590","https://openalex.org/I4210091437","https://openalex.org/I39804081","https://openalex.org/I4210094297","https://openalex.org/I2746051580","https://openalex.org/I4210107423"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020115791","display_name":"Benoist Laurent","orcid":null},"institutions":[{"id":"https://openalex.org/I4210107423","display_name":"Institut de Biologie Physico-Chimique","ror":"https://ror.org/01na0pb61","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210107423"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Benoist Laurent","raw_affiliation_strings":["Institut de Biologie Physico-Chimique, FRC 550, CNRS , Paris , France"],"affiliations":[{"raw_affiliation_string":"Institut de Biologie Physico-Chimique, FRC 550, CNRS , Paris , France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210107423"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054938485","display_name":"Sean Gu\u00e9gan","orcid":null},"institutions":[{"id":"https://openalex.org/I2746051580","display_name":"Universit\u00e9 Paris Sciences et Lettres","ror":"https://ror.org/013cjyk83","country_code":"FR","type":"education","lineage":["https://openalex.org/I2746051580"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210091437","display_name":"Sorbonne Paris Cit\u00e9","ror":"https://ror.org/001z21q04","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210091437"]},{"id":"https://openalex.org/I4210094297","display_name":"Laboratoire de Biochimie Th\u00e9orique","ror":"https://ror.org/00nvjgv40","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4210094297","https://openalex.org/I4210128300"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210107423","display_name":"Institut de Biologie Physico-Chimique","ror":"https://ror.org/01na0pb61","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210107423"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sean Gu\u00e9gan","raw_affiliation_strings":["Laboratoire de Biochimie Th\u00e9orique, CNRS, UPR9080, Institut de Biologie Physico-Chimique , Univ Paris Diderot, Sorbonne Paris Cit\u00e9, PSL Research University , 13 rue Pierre et Marie Curie , 75005, Paris , France"],"affiliations":[{"raw_affiliation_string":"Laboratoire de Biochimie Th\u00e9orique, CNRS, UPR9080, Institut de Biologie Physico-Chimique , Univ Paris Diderot, Sorbonne Paris Cit\u00e9, PSL Research University , 13 rue Pierre et Marie Curie , 75005, Paris , France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I1294671590","https://openalex.org/I4210091437","https://openalex.org/I39804081","https://openalex.org/I4210094297","https://openalex.org/I2746051580","https://openalex.org/I4210107423"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089734215","display_name":"Christophe Marchand","orcid":"https://orcid.org/0000-0002-0729-3841"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210107423","display_name":"Institut de Biologie Physico-Chimique","ror":"https://ror.org/01na0pb61","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210107423"]},{"id":"https://openalex.org/I4210166586","display_name":"Laboratoire de Biologie Mol\u00e9culaire et Cellulaire des Eucaryotes","ror":"https://ror.org/05mx55f96","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210166586"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Christophe H. Marchand","raw_affiliation_strings":["Laboratoire de Biologie Mol\u00e9culaire et Cellulaire des Eucaryotes, Institut de Biologie Physico-Chimique, UMR8226, CNRS, Sorbonne Universit\u00e9, 13 rue Pierre et Marie Curie , 75005, Paris , France"],"affiliations":[{"raw_affiliation_string":"Laboratoire de Biologie Mol\u00e9culaire et Cellulaire des Eucaryotes, Institut de Biologie Physico-Chimique, UMR8226, CNRS, Sorbonne Universit\u00e9, 13 rue Pierre et Marie Curie , 75005, Paris , France","institution_ids":["https://openalex.org/I4210107423","https://openalex.org/I4210166586","https://openalex.org/I39804081","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037817441","display_name":"St\u00e9phane D. Lemaire","orcid":"https://orcid.org/0000-0001-6442-0547"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210107423","display_name":"Institut de Biologie Physico-Chimique","ror":"https://ror.org/01na0pb61","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210107423"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210166586","display_name":"Laboratoire de Biologie Mol\u00e9culaire et Cellulaire des Eucaryotes","ror":"https://ror.org/05mx55f96","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210166586"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"St\u00e9phane D. Lemaire","raw_affiliation_strings":["Laboratoire de Biologie Mol\u00e9culaire et Cellulaire des Eucaryotes, Institut de Biologie Physico-Chimique, UMR8226, CNRS, Sorbonne Universit\u00e9, 13 rue Pierre et Marie Curie , 75005, Paris , France"],"affiliations":[{"raw_affiliation_string":"Laboratoire de Biologie Mol\u00e9culaire et Cellulaire des Eucaryotes, Institut de Biologie Physico-Chimique, UMR8226, CNRS, Sorbonne Universit\u00e9, 13 rue Pierre et Marie Curie , 75005, Paris , France","institution_ids":["https://openalex.org/I4210107423","https://openalex.org/I4210166586","https://openalex.org/I39804081","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016139627","display_name":"Marc Baaden","orcid":"https://orcid.org/0000-0001-6472-0486"},"institutions":[{"id":"https://openalex.org/I4210107423","display_name":"Institut de Biologie Physico-Chimique","ror":"https://ror.org/01na0pb61","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210107423"]},{"id":"https://openalex.org/I4210091437","display_name":"Sorbonne Paris Cit\u00e9","ror":"https://ror.org/001z21q04","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210091437"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I2746051580","display_name":"Universit\u00e9 Paris Sciences et Lettres","ror":"https://ror.org/013cjyk83","country_code":"FR","type":"education","lineage":["https://openalex.org/I2746051580"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210094297","display_name":"Laboratoire de Biochimie Th\u00e9orique","ror":"https://ror.org/00nvjgv40","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4210094297","https://openalex.org/I4210128300"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Marc Baaden","raw_affiliation_strings":["Laboratoire de Biochimie Th\u00e9orique, CNRS, UPR9080, Institut de Biologie Physico-Chimique , Univ Paris Diderot, Sorbonne Paris Cit\u00e9, PSL Research University , 13 rue Pierre et Marie Curie , 75005, Paris , France"],"affiliations":[{"raw_affiliation_string":"Laboratoire de Biochimie Th\u00e9orique, CNRS, UPR9080, Institut de Biologie Physico-Chimique , Univ Paris Diderot, Sorbonne Paris Cit\u00e9, PSL Research University , 13 rue Pierre et Marie Curie , 75005, Paris , France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I1294671590","https://openalex.org/I4210091437","https://openalex.org/I39804081","https://openalex.org/I4210094297","https://openalex.org/I2746051580","https://openalex.org/I4210107423"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5016139627","https://openalex.org/A5037817441"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I2746051580","https://openalex.org/I39804081","https://openalex.org/I4210091437","https://openalex.org/I4210094297","https://openalex.org/I4210107423","https://openalex.org/I4210166586"],"apc_list":null,"apc_paid":null,"fwci":2.0317,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.85395241,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"15","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7603954672813416},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7278776168823242},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.5893725156784058},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5719026923179626},{"id":"https://openalex.org/keywords/visual-analytics","display_name":"Visual analytics","score":0.4124554991722107},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.375454843044281},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.28935152292251587},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.22960436344146729},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14107602834701538}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7603954672813416},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7278776168823242},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.5893725156784058},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5719026923179626},{"id":"https://openalex.org/C59732488","wikidata":"https://www.wikidata.org/wiki/Q2528440","display_name":"Visual analytics","level":3,"score":0.4124554991722107},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.375454843044281},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.28935152292251587},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.22960436344146729},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14107602834701538},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000076142","descriptor_name":"Virtual Reality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000076142","descriptor_name":"Virtual Reality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000076142","descriptor_name":"Virtual Reality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008961","descriptor_name":"Models, Structural","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008961","descriptor_name":"Models, Structural","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008961","descriptor_name":"Models, Structural","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010084","descriptor_name":"Oxidation-Reduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010084","descriptor_name":"Oxidation-Reduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010084","descriptor_name":"Oxidation-Reduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016825","descriptor_name":"Chlamydomonas reinhardtii","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016825","descriptor_name":"Chlamydomonas reinhardtii","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016825","descriptor_name":"Chlamydomonas reinhardtii","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016825","descriptor_name":"Chlamydomonas reinhardtii","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016825","descriptor_name":"Chlamydomonas reinhardtii","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016825","descriptor_name":"Chlamydomonas reinhardtii","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020418","descriptor_name":"Algal Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020418","descriptor_name":"Algal Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020418","descriptor_name":"Algal Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020418","descriptor_name":"Algal Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020418","descriptor_name":"Algal Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020418","descriptor_name":"Algal Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1515/jib-2018-0006","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2018-0006","pdf_url":"https://www.degruyter.com/downloadpdf/journals/jib/15/2/article-20180006.pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29927748","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29927748","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:hal-01935585v1","is_oa":true,"landing_page_url":"https://hal.science/hal-01935585","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, 2018, 15 (2), pp.20180006. &#x27E8;10.1515/jib-2018-0006&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:983a449d1cf2448aaf03035e2aeb3ba0","is_oa":true,"landing_page_url":"https://doaj.org/article/983a449d1cf2448aaf03035e2aeb3ba0","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 15, Iss 2, Pp I1-7 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5327991","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6167043","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1515/jib-2018-0006","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2018-0006","pdf_url":"https://www.degruyter.com/downloadpdf/journals/jib/15/2/article-20180006.pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.4300000071525574}],"awards":[{"id":"https://openalex.org/G1041345024","display_name":null,"funder_award_id":"CACSICE","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G176070692","display_name":null,"funder_award_id":"France","funder_id":"https://openalex.org/F4320321589","funder_display_name":"Fondation pour la Recherche M\u00e9dicale"},{"id":"https://openalex.org/G263859425","display_name":null,"funder_award_id":"10.13039/501100001665","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G3807293409","display_name":null,"funder_award_id":"ANR-11-LABX-00","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4244104215","display_name":null,"funder_award_id":"LABX-0011-01","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4294502132","display_name":null,"funder_award_id":"11-LABX-0011","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4867735736","display_name":null,"funder_award_id":"11-EQPX-0008","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5341702794","display_name":null,"funder_award_id":"11-EQPX-00","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6024981432","display_name":null,"funder_award_id":"ANR-11-LABX-0011-01","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6851345361","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6868955033","display_name":null,"funder_award_id":"11-LABX-0011-01","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G879526358","display_name":null,"funder_award_id":"ANR-11-EQPX-0008","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G882785353","display_name":null,"funder_award_id":"501100001665","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G8839156256","display_name":null,"funder_award_id":"NR-11-LABX-0011-01","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G8912324937","display_name":null,"funder_award_id":"FRM DBI20141231801","funder_id":"https://openalex.org/F4320321589","funder_display_name":"Fondation pour la Recherche M\u00e9dicale"},{"id":"https://openalex.org/G8924954789","display_name":null,"funder_award_id":"ANR-11-LABX-0011","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320321589","display_name":"Fondation pour la Recherche M\u00e9dicale","ror":"https://ror.org/04w6kn183"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2877867551.pdf","grobid_xml":"https://content.openalex.org/works/W2877867551.grobid-xml"},"referenced_works_count":71,"referenced_works":["https://openalex.org/W1486001775","https://openalex.org/W1524191071","https://openalex.org/W1867506901","https://openalex.org/W1963482333","https://openalex.org/W1989644067","https://openalex.org/W1992104581","https://openalex.org/W1993679992","https://openalex.org/W2004228538","https://openalex.org/W2008708467","https://openalex.org/W2010099799","https://openalex.org/W2014507205","https://openalex.org/W2015403140","https://openalex.org/W2018339027","https://openalex.org/W2033345590","https://openalex.org/W2033839060","https://openalex.org/W2038622803","https://openalex.org/W2043359500","https://openalex.org/W2046720391","https://openalex.org/W2052733322","https://openalex.org/W2053389329","https://openalex.org/W2063328136","https://openalex.org/W2064437293","https://openalex.org/W2066142272","https://openalex.org/W2068102085","https://openalex.org/W2069152576","https://openalex.org/W2074431736","https://openalex.org/W2076367848","https://openalex.org/W2080993455","https://openalex.org/W2081237490","https://openalex.org/W2091097441","https://openalex.org/W2097453652","https://openalex.org/W2098027521","https://openalex.org/W2099245389","https://openalex.org/W2101791557","https://openalex.org/W2103017472","https://openalex.org/W2103425480","https://openalex.org/W2110041134","https://openalex.org/W2112284439","https://openalex.org/W2114496649","https://openalex.org/W2115746733","https://openalex.org/W2117077088","https://openalex.org/W2120230374","https://openalex.org/W2126364917","https://openalex.org/W2130479394","https://openalex.org/W2134757269","https://openalex.org/W2142434250","https://openalex.org/W2144741676","https://openalex.org/W2145268834","https://openalex.org/W2145330293","https://openalex.org/W2147526198","https://openalex.org/W2152997175","https://openalex.org/W2156487548","https://openalex.org/W2156876367","https://openalex.org/W2158714788","https://openalex.org/W2163055284","https://openalex.org/W2168783124","https://openalex.org/W2223549218","https://openalex.org/W2325288941","https://openalex.org/W2484785720","https://openalex.org/W2582743722","https://openalex.org/W2584459311","https://openalex.org/W2736942843","https://openalex.org/W2746496230","https://openalex.org/W4210622789","https://openalex.org/W4214598766","https://openalex.org/W4230640326","https://openalex.org/W4233415899","https://openalex.org/W4238389789","https://openalex.org/W4254025072","https://openalex.org/W4256333965","https://openalex.org/W4256522398"],"related_works":["https://openalex.org/W2362367986","https://openalex.org/W348707231","https://openalex.org/W2064719069","https://openalex.org/W2316833920","https://openalex.org/W4377098514","https://openalex.org/W3041760129","https://openalex.org/W1975345997","https://openalex.org/W4387564043","https://openalex.org/W2290118617","https://openalex.org/W2019197244"],"abstract_inverted_index":{"Proteomic":[0],"and":[1,16,53,67,147,172],"transcriptomic":[2],"technologies":[3],"resulted":[4],"in":[5,149],"massive":[6],"biological":[7],"datasets,":[8],"their":[9],"interpretation":[10],"requiring":[11],"sophisticated":[12],"computational":[13],"strategies.":[14],"Efficient":[15],"intuitive":[17],"real-time":[18],"analysis":[19,134,170],"remains":[20],"challenging.":[21],"We":[22,60,138,190],"use":[23],"proteomic":[24],"data":[25,75,145,181],"on":[26,86],"1417":[27],"proteins":[28],"of":[29,41,72,92,112,135],"the":[30,110,140,198],"green":[31],"microalga":[32],"Chlamydomonas":[33],"reinhardtii":[34],"to":[35,62,78,125,142,152,176],"investigate":[36],"physicochemical":[37],"parameters":[38],"governing":[39],"selectivity":[40],"three":[42,98],"cysteine-based":[43],"redox":[44,73],"post":[45],"translational":[46],"modifications":[47],"(PTM):":[48],"glutathionylation":[49],"(SSG),":[50],"nitrosylation":[51],"(SNO)":[52],"disulphide":[54],"bonds":[55],"(SS)":[56],"reduced":[57],"by":[58,103,166],"thioredoxins.":[59],"aim":[61],"understand":[63],"underlying":[64],"molecular":[65,153],"mechanisms":[66],"structural":[68,79,136],"determinants":[69],"through":[70],"integration":[71],"proteome":[74],"from":[76,182],"gene-":[77],"level.":[80],"Our":[81,119,162],"interactive":[82],"visual":[83],"analytics":[84],"approach":[85],"an":[87,168],"8.3":[88],"m2":[89],"display":[90,143],"wall":[91],"25":[93],"MPixel":[94],"resolution":[95],"features":[96],"stereoscopic":[97],"dimensions":[99],"(3D)":[100],"representation":[101],"performed":[102],"UnityMol":[104],"WebGL.":[105],"Virtual":[106],"reality":[107],"headsets":[108],"complement":[109],"range":[111],"usage":[113],"configurations":[114],"for":[115,132,159,197],"fully":[116],"immersive":[117,133],"tasks.":[118],"experiments":[120],"confirm":[121],"that":[122],"fast":[123],"access":[124],"a":[126,186,194],"rich":[127],"cross-linked":[128],"database":[129],"is":[130,164],"necessary":[131],"data.":[137],"emphasize":[139],"possibility":[141],"complex":[144],"structures":[146],"relationships":[148],"3D,":[150],"intrinsic":[151],"structure":[154],"visualization,":[155],"but":[156],"less":[157],"common":[158],"omics-network":[160],"analysis.":[161,178],"setup":[163],"powered":[165],"MinOmics,":[167],"integrated":[169],"pipeline":[171],"visualization":[173],"framework":[174],"dedicated":[175],"multi-omics":[177],"MinOmics":[179],"integrates":[180],"various":[183],"sources":[184],"into":[185],"materialized":[187],"physical":[188],"repository.":[189],"evaluate":[191],"its":[192],"performance,":[193],"design":[195],"criterion":[196],"framework.":[199]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":1}],"updated_date":"2026-04-11T08:14:18.477133","created_date":"2025-10-10T00:00:00"}
