{"id":"https://openalex.org/W2822996269","doi":"https://doi.org/10.1515/jib-2018-0004","title":"Semantics for an Integrative and Immersive Pipeline Combining Visualization and Analysis of Molecular Data","display_name":"Semantics for an Integrative and Immersive Pipeline Combining Visualization and Analysis of Molecular Data","publication_year":2018,"publication_date":"2018-06-01","ids":{"openalex":"https://openalex.org/W2822996269","doi":"https://doi.org/10.1515/jib-2018-0004","mag":"2822996269","pmid":"https://pubmed.ncbi.nlm.nih.gov/29982236"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2018-0004","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2018-0004","pdf_url":"https://www.degruyter.com/downloadpdf/journals/jib/15/2/article-20180004.pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://www.degruyter.com/downloadpdf/journals/jib/15/2/article-20180004.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046643239","display_name":"Mika\u00ebl Trellet","orcid":"https://orcid.org/0000-0001-6337-581X"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Mikael Trellet","raw_affiliation_strings":["Faculty of Science, Chemistry, Computational Structural Biology group, Bijvoet Center for Biomolecular Research , Padualaan 9 , 3584CH Utrecht , Netherlands"],"raw_orcid":"https://orcid.org/0000-0001-6337-581X","affiliations":[{"raw_affiliation_string":"Faculty of Science, Chemistry, Computational Structural Biology group, Bijvoet Center for Biomolecular Research , Padualaan 9 , 3584CH Utrecht , Netherlands","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062588006","display_name":"Nicolas F\u00e9rey","orcid":"https://orcid.org/0000-0002-7713-001X"},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210115485","display_name":"Laboratoire d'Informatique pour la M\u00e9canique et les Sciences de l'Ing\u00e9nieur","ror":"https://ror.org/01raq4x89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I4210115485","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Nicolas F\u00e9rey","raw_affiliation_strings":["VENISE Group, LIMSI, CNRS, Universit\u00e9 Paris Sud , Orsay , France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"VENISE Group, LIMSI, CNRS, Universit\u00e9 Paris Sud , Orsay , France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I4210115485","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035417484","display_name":"Jakub Floty\u0144ski","orcid":"https://orcid.org/0000-0001-5104-2022"},"institutions":[{"id":"https://openalex.org/I12379730","display_name":"Pozna\u0144 University of Economics and Business","ror":"https://ror.org/0532c1x92","country_code":"PL","type":"education","lineage":["https://openalex.org/I12379730"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Jakub Floty\u0144ski","raw_affiliation_strings":["Pozna\u0144 Univ. of Economics and Business , Pozna\u0144 , Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pozna\u0144 Univ. of Economics and Business , Pozna\u0144 , Poland","institution_ids":["https://openalex.org/I12379730"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016139627","display_name":"Marc Baaden","orcid":"https://orcid.org/0000-0001-6472-0486"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I2746051580","display_name":"Universit\u00e9 Paris Sciences et Lettres","ror":"https://ror.org/013cjyk83","country_code":"FR","type":"education","lineage":["https://openalex.org/I2746051580"]},{"id":"https://openalex.org/I4210091437","display_name":"Sorbonne Paris Cit\u00e9","ror":"https://ror.org/001z21q04","country_code":"FR","type":"other","lineage":["https://openalex.org/I4210091437"]},{"id":"https://openalex.org/I4210094297","display_name":"Laboratoire de Biochimie Th\u00e9orique","ror":"https://ror.org/00nvjgv40","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4210094297","https://openalex.org/I4210128300"]},{"id":"https://openalex.org/I4210107423","display_name":"Institut de Biologie Physico-Chimique","ror":"https://ror.org/01na0pb61","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210107423"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marc Baaden","raw_affiliation_strings":["Laboratoire de Biochimie Th\u00e9orique, CNRS, UPR9080, Institut de Biologie Physico-Chimique, Univ Paris Diderot, Sorbonne Paris Cit\u00e9, PSL Research University , Paris , France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Biochimie Th\u00e9orique, CNRS, UPR9080, Institut de Biologie Physico-Chimique, Univ Paris Diderot, Sorbonne Paris Cit\u00e9, PSL Research University , Paris , France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I1294671590","https://openalex.org/I4210091437","https://openalex.org/I4210094297","https://openalex.org/I2746051580","https://openalex.org/I4210107423"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045447396","display_name":"Patrick Bourdot","orcid":"https://orcid.org/0000-0003-2247-1930"},"institutions":[{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210115485","display_name":"Laboratoire d'Informatique pour la M\u00e9canique et les Sciences de l'Ing\u00e9nieur","ror":"https://ror.org/01raq4x89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I4210115485","https://openalex.org/I4210159245"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Patrick Bourdot","raw_affiliation_strings":["VENISE Group, LIMSI, CNRS, Universit\u00e9 Paris Sud , Orsay , France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"VENISE Group, LIMSI, CNRS, Universit\u00e9 Paris Sud , Orsay , France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I4210115485","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5046643239"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":11.053,"has_fulltext":true,"cited_by_count":27,"citation_normalized_percentile":{"value":0.98156735,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"15","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9846000075340271,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8432475328445435},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7738922834396362},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5983468294143677},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5959494113922119},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.5916027426719666},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5777515172958374},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.554023265838623},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.40860235691070557},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.39421188831329346},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.20216450095176697},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14835307002067566}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8432475328445435},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7738922834396362},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5983468294143677},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5959494113922119},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.5916027426719666},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5777515172958374},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.554023265838623},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.40860235691070557},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.39421188831329346},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.20216450095176697},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14835307002067566},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008961","descriptor_name":"Models, Structural","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008961","descriptor_name":"Models, Structural","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008961","descriptor_name":"Models, Structural","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1515/jib-2018-0004","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2018-0004","pdf_url":"https://www.degruyter.com/downloadpdf/journals/jib/15/2/article-20180004.pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29982236","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29982236","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:hal-01935586v1","is_oa":false,"landing_page_url":"https://hal.science/hal-01935586","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, 2018, 15 (2), pp.20180004. &#x27E8;10.1515/jib-2018-0004&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:0bc50ffe890b43c2bbb6617d7e5bb826","is_oa":true,"landing_page_url":"https://doaj.org/article/0bc50ffe890b43c2bbb6617d7e5bb826","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 15, Iss 2, Pp 643-6 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5327990","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6167042","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1515/jib-2018-0004","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2018-0004","pdf_url":"https://www.degruyter.com/downloadpdf/journals/jib/15/2/article-20180004.pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.4399999976158142}],"awards":[{"id":"https://openalex.org/G1817849798","display_name":"Infrastructure haute performance pour la visualisation interactive et collaborative","funder_award_id":"ANR-10-EQPX-0026","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G2297262676","display_name":"Exa-scalable interactive visual analysis for life & materials sciences","funder_award_id":"ANR-11-MONU-0003","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4244104215","display_name":null,"funder_award_id":"LABX-0011-01","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4294502132","display_name":null,"funder_award_id":"11-LABX-0011","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4867735736","display_name":null,"funder_award_id":"11-EQPX-0008","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6024981432","display_name":null,"funder_award_id":"ANR-11-LABX-0011-01","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6868955033","display_name":null,"funder_award_id":"11-LABX-0011-01","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7240651115","display_name":null,"funder_award_id":"ANR-10","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G8510727784","display_name":null,"funder_award_id":"ANR-10-EQPX","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G879526358","display_name":null,"funder_award_id":"ANR-11-EQPX-0008","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G8924954789","display_name":null,"funder_award_id":"ANR-11-LABX-0011","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2822996269.pdf","grobid_xml":"https://content.openalex.org/works/W2822996269.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W139763282","https://openalex.org/W192939834","https://openalex.org/W255996521","https://openalex.org/W1031578623","https://openalex.org/W1493596129","https://openalex.org/W1538352490","https://openalex.org/W1837624333","https://openalex.org/W1937151504","https://openalex.org/W1965112674","https://openalex.org/W1966966240","https://openalex.org/W1978082383","https://openalex.org/W2013196554","https://openalex.org/W2013511859","https://openalex.org/W2021064626","https://openalex.org/W2028046413","https://openalex.org/W2029667189","https://openalex.org/W2054470867","https://openalex.org/W2080993455","https://openalex.org/W2098055048","https://openalex.org/W2103017472","https://openalex.org/W2113142309","https://openalex.org/W2121400889","https://openalex.org/W2128918568","https://openalex.org/W2146437295","https://openalex.org/W2147845048","https://openalex.org/W2160845726","https://openalex.org/W2162778987","https://openalex.org/W2165428180","https://openalex.org/W2171380824","https://openalex.org/W2484785720","https://openalex.org/W2573572361","https://openalex.org/W2587819619","https://openalex.org/W2734356283","https://openalex.org/W2746496230","https://openalex.org/W2765380686","https://openalex.org/W4210622789","https://openalex.org/W4239696231","https://openalex.org/W4239907424"],"related_works":["https://openalex.org/W2068608913","https://openalex.org/W3124914020","https://openalex.org/W2141033859","https://openalex.org/W2077542787","https://openalex.org/W2071701083","https://openalex.org/W2383687187","https://openalex.org/W2156434174","https://openalex.org/W2121496884","https://openalex.org/W2387910809","https://openalex.org/W3196817267"],"abstract_inverted_index":{"The":[0,106],"advances":[1],"made":[2,51],"in":[3,6,39,101,141,169],"recent":[4],"years":[5],"the":[7,14,40,58,113,116,124,146,157,162],"field":[8],"of":[9,18,32,43,108,118,126,145],"structural":[10],"biology":[11],"significantly":[12],"increased":[13],"throughput":[15],"and":[16,27,68,74,96,115,152,165],"complexity":[17],"data":[19,33,67,131],"that":[20,69],"scientists":[21,54],"have":[22,49],"to":[23,52,57,64,123,156,161,174],"deal":[24],"with.":[25],"Combining":[26],"analyzing":[28],"such":[29],"heterogeneous":[30,98],"amounts":[31],"became":[34],"a":[35,71,102,109,119,170],"crucial":[36],"time":[37],"consumer":[38],"daily":[41],"tasks":[42],"scientists.":[44],"However,":[45],"only":[46],"few":[47],"efforts":[48],"been":[50],"offer":[53],"an":[55,81,127],"alternative":[56],"standard":[59],"compartmentalized":[60],"tools":[61],"they":[62],"use":[63],"explore":[65],"their":[66],"involve":[70],"regular":[72],"back":[73],"forth":[75],"between":[76],"them.":[77],"We":[78],"propose":[79],"here":[80],"integrated":[82],"pipeline":[83],"especially":[84],"designed":[85],"for":[86],"immersive":[87],"environments,":[88],"promoting":[89],"direct":[90],"interactions":[91],"on":[92],"semantically":[93],"linked":[94],"2D":[95],"3D":[97],"data,":[99],"displayed":[100],"common":[103],"working":[104,172],"space.":[105],"creation":[107,125],"semantic":[110],"definition":[111,144],"describing":[112],"content":[114],"context":[117],"molecular":[120],"scene":[121],"leads":[122],"intelligent":[128],"system":[129],"where":[130],"are":[132],"(1)":[133],"combined":[134],"through":[135],"pre-existing":[136],"or":[137],"inferred":[138],"links":[139],"present":[140],"our":[142],"hierarchical":[143],"concepts,":[147],"(2)":[148],"enriched":[149],"with":[150,159],"suitable":[151],"adaptive":[153],"analyses":[154],"proposed":[155],"user":[158],"respect":[160],"current":[163],"task":[164],"(3)":[166],"interactively":[167],"presented":[168],"unique":[171],"environment":[173],"be":[175],"explored.":[176]},"counts_by_year":[{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":2}],"updated_date":"2026-05-07T13:39:58.223016","created_date":"2025-10-10T00:00:00"}
