{"id":"https://openalex.org/W2842599072","doi":"https://doi.org/10.1515/jib-2018-0003","title":"Heuristic Modeling and 3D Stereoscopic Visualization of a Chlamydomonas reinhardtii Cell","display_name":"Heuristic Modeling and 3D Stereoscopic Visualization of a Chlamydomonas reinhardtii Cell","publication_year":2018,"publication_date":"2018-06-01","ids":{"openalex":"https://openalex.org/W2842599072","doi":"https://doi.org/10.1515/jib-2018-0003","mag":"2842599072","pmid":"https://pubmed.ncbi.nlm.nih.gov/30001212"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2018-0003","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2018-0003","pdf_url":"https://www.degruyter.com/downloadpdf/journals/jib/15/2/article-20180003.pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","ki-jl-1","medline","norway-1"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.degruyter.com/downloadpdf/journals/jib/15/2/article-20180003.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042521339","display_name":"Niklas Biere","orcid":"https://orcid.org/0000-0003-4864-2822","observed_orcids":["https://orcid.org/0000-0003-4864-2822"]},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Niklas Biere","raw_affiliation_strings":["Experimental Biophysics and Applied Nanoscience, Faculty of Physics , Bielefeld University , Bielefeld , Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Experimental Biophysics and Applied Nanoscience, Faculty of Physics , Bielefeld University , Bielefeld , Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012759872","display_name":"Mehmood Ghaffar","orcid":"https://orcid.org/0000-0001-5062-5429","observed_orcids":["https://orcid.org/0000-0001-5062-5429"]},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Mehmood Ghaffar","raw_affiliation_strings":["Bio-/Medical Informatics Department, Faculty of Technology , Bielefeld University , Bielefeld , Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bio-/Medical Informatics Department, Faculty of Technology , Bielefeld University , Bielefeld , Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035534026","display_name":"Anja Doebbe","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Anja Doebbe","raw_affiliation_strings":["Algae Biotechnology and Bioenergy, Faculty of Biology , Bielefeld University , Bielefeld , Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Algae Biotechnology and Bioenergy, Faculty of Biology , Bielefeld University , Bielefeld , Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004121225","display_name":"Daniel J\u00e4ger","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Daniel J\u00e4ger","raw_affiliation_strings":["Algae Biotechnology and Bioenergy, Faculty of Biology , Bielefeld University , Bielefeld , Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Algae Biotechnology and Bioenergy, Faculty of Biology , Bielefeld University , Bielefeld , Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042896759","display_name":"Nils Rothe","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nils Rothe","raw_affiliation_strings":["Bio-/Medical Informatics Department, Faculty of Technology , Bielefeld University , Bielefeld , Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bio-/Medical Informatics Department, Faculty of Technology , Bielefeld University , Bielefeld , Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037998768","display_name":"Benjamin M. Friedrich","orcid":"https://orcid.org/0000-0002-9742-6555","observed_orcids":["https://orcid.org/0000-0002-9742-6555"]},"institutions":[{"id":"https://openalex.org/I4405266956","display_name":"Center for Advancing Electronics Dresden","ror":"https://ror.org/00g3vrr12","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4405266956","https://openalex.org/I78650965"]},{"id":"https://openalex.org/I78650965","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Benjamin M. Friedrich","raw_affiliation_strings":["Biological Algorithms Group, Center for Advancing Electronics Dresden , Technical University Dresden , Dresden , Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biological Algorithms Group, Center for Advancing Electronics Dresden , Technical University Dresden , Dresden , Germany","institution_ids":["https://openalex.org/I4405266956","https://openalex.org/I78650965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001882549","display_name":"Ralf Hofest\u00e4dt","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ralf Hofest\u00e4dt","raw_affiliation_strings":["Bio-/Medical Informatics Department, Faculty of Technology , Bielefeld University , Bielefeld , Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bio-/Medical Informatics Department, Faculty of Technology , Bielefeld University , Bielefeld , Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003441276","display_name":"Falk Schreiber","orcid":"https://orcid.org/0000-0002-9307-3254","observed_orcids":["https://orcid.org/0000-0002-9307-3254"]},"institutions":[{"id":"https://openalex.org/I189712700","display_name":"University of Konstanz","ror":"https://ror.org/0546hnb39","country_code":"DE","type":"education","lineage":["https://openalex.org/I189712700"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","DE"],"is_corresponding":false,"raw_author_name":"Falk Schreiber","raw_affiliation_strings":["Computational Life Sciences, Department of Computer and Information Science , University of Konstanz , Konstanz , Germany","Faculty of Information Technology , Monash University , Melbourne , Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Life Sciences, Department of Computer and Information Science , University of Konstanz , Konstanz , Germany","institution_ids":["https://openalex.org/I189712700"]},{"raw_affiliation_string":"Faculty of Information Technology , Monash University , Melbourne , Australia","institution_ids":["https://openalex.org/I56590836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023105188","display_name":"Olaf Kruse","orcid":"https://orcid.org/0000-0001-9874-382X","observed_orcids":["https://orcid.org/0000-0001-9874-382X"]},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Olaf Kruse","raw_affiliation_strings":["Algae Biotechnology and Bioenergy, Faculty of Biology , Bielefeld University , Bielefeld , Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Algae Biotechnology and Bioenergy, Faculty of Biology , Bielefeld University , Bielefeld , Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059487495","display_name":"Bj\u00f6rn Sommer","orcid":"https://orcid.org/0000-0003-1514-9898","observed_orcids":["https://orcid.org/0000-0003-1514-9898"]},"institutions":[{"id":"https://openalex.org/I189712700","display_name":"University of Konstanz","ror":"https://ror.org/0546hnb39","country_code":"DE","type":"education","lineage":["https://openalex.org/I189712700"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","DE"],"is_corresponding":true,"raw_author_name":"Bj\u00f6rn Sommer","raw_affiliation_strings":["Computational Life Sciences, Department of Computer and Information Science , University of Konstanz , Konstanz , Germany","Faculty of Information Technology , Monash University , Melbourne , Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Life Sciences, Department of Computer and Information Science , University of Konstanz , Konstanz , Germany","institution_ids":["https://openalex.org/I189712700"]},{"raw_affiliation_string":"Faculty of Information Technology , Monash University , Melbourne , Australia","institution_ids":["https://openalex.org/I56590836"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5059487495"],"corresponding_institution_ids":["https://openalex.org/I189712700","https://openalex.org/I56590836"],"apc_list":{"value":1050,"currency":"EUR","value_usd":1187},"apc_paid":{"value":1050,"currency":"EUR","value_usd":1187},"fwci":0.7064,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.68213866,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":97},"biblio":{"volume":"15","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.20069999992847443,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.20069999992847443,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11984","display_name":"Anatomy and Medical Technology","score":0.14990000426769257,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12093","display_name":"Greenhouse Technology and Climate Control","score":0.1096000000834465,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chlamydomonas-reinhardtii","display_name":"Chlamydomonas reinhardtii","score":0.9990000128746033},{"id":"https://openalex.org/keywords/cell-membrane-composition","display_name":"cell membrane composition","score":0.7009999752044678},{"id":"https://openalex.org/keywords/metabolic-pathways","display_name":"metabolic pathways","score":0.6690000295639038},{"id":"https://openalex.org/keywords/educational-animation","display_name":"educational animation","score":0.5860000252723694},{"id":"https://openalex.org/keywords/blender","display_name":"Blender","score":0.5479999780654907},{"id":"https://openalex.org/keywords/electron-microscopy-images","display_name":"electron microscopy images","score":0.4659999907016754},{"id":"https://openalex.org/keywords/light-microscopy-images","display_name":"light microscopy images","score":0.8360000252723694},{"id":"https://openalex.org/keywords/alternative-energy-production","display_name":"alternative energy production","score":0.5699999928474426}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7868884205818176},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7227158546447754},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6828036308288574},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.6050645709037781},{"id":"https://openalex.org/C2777897806","wikidata":"https://www.wikidata.org/wiki/Q568742","display_name":"3D modeling","level":2,"score":0.6005095839500427},{"id":"https://openalex.org/C126057942","wikidata":"https://www.wikidata.org/wiki/Q35158","display_name":"Stereoscopy","level":2,"score":0.5924980640411377},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.5448044538497925},{"id":"https://openalex.org/C2777727519","wikidata":"https://www.wikidata.org/wiki/Q291827","display_name":"Chlamydomonas reinhardtii","level":4,"score":0.5258282423019409},{"id":"https://openalex.org/C59732488","wikidata":"https://www.wikidata.org/wiki/Q2528440","display_name":"Visual analytics","level":3,"score":0.5174372792243958},{"id":"https://openalex.org/C502989409","wikidata":"https://www.wikidata.org/wiki/Q11425","display_name":"Animation","level":2,"score":0.5073975920677185},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.46853747963905334},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.404657244682312},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.31521594524383545},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.19399532675743103},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11910083889961243},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.11884292960166931},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000066506","descriptor_name":"Heuristics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000066506","descriptor_name":"Heuristics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000066506","descriptor_name":"Heuristics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002468","descriptor_name":"Cell Physiological Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016825","descriptor_name":"Chlamydomonas reinhardtii","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D016825","descriptor_name":"Chlamydomonas reinhardtii","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D016825","descriptor_name":"Chlamydomonas reinhardtii","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D016825","descriptor_name":"Chlamydomonas reinhardtii","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016825","descriptor_name":"Chlamydomonas reinhardtii","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016825","descriptor_name":"Chlamydomonas reinhardtii","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1515/jib-2018-0003","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2018-0003","pdf_url":"https://www.degruyter.com/downloadpdf/journals/jib/15/2/article-20180003.pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","ki-jl-1","medline","norway-1"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmid:30001212","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30001212","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:researchonline.rca.ac.uk:4211","is_oa":false,"landing_page_url":"https://researchonline.rca.ac.uk/4211/1/%5BJournal%20of%20Integrative%20Bioinformatics%5D%20Heuristic%20Modeling%20and%203D%20Stereoscopic%20Visualization%20of%20a%20Chlamydomonas%20reinhardtii%20Cell.pdf","pdf_url":"https://researchonline.rca.ac.uk/4211/1/%5BJournal%20of%20Integrative%20Bioinformatics%5D%20Heuristic%20Modeling%20and%203D%20Stereoscopic%20Visualization%20of%20a%20Chlamydomonas%20reinhardtii%20Cell.pdf","source":{"id":"https://openalex.org/S4377196584","display_name":"Archive of research processes and output produced by RCA (Royal College of Art)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I165526535","host_organization_name":"Royal College of Art","host_organization_lineage":["https://openalex.org/I165526535"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:5327994","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6167046","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:6167046","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6167046","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Integr Bioinform","raw_type":"Text"},{"id":"pmh:oai:monash.edu:openaire/ae08d4fd-105c-4f1a-8ae4-138ec7bcefce","is_oa":true,"landing_page_url":"https://research.monash.edu/files/325371439/325371191_oa.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306402625","display_name":"Monash University Research Portal (Monash University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I56590836","host_organization_name":"Monash University","host_organization_lineage":["https://openalex.org/I56590836"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Biere, N, Ghaffar, M, Doebbe, A, J\u00e4ger, D, Rothe, N, Friedrich, B M, Hofest\u00e4dt, R, Schreiber, F, Kruse, O & Sommer, B 2018, 'Heuristic modeling and 3D stereoscopic visualization of a Chlamydomonas reinhardtii \u00a0cell', Journal of integrative bioinformatics, vol. 15, no. 2. https://doi.org/10.1515/jib-2018-0003","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:46f16720e7714d2390ba3e1ca8f10053","is_oa":false,"landing_page_url":"https://doaj.org/article/46f16720e7714d2390ba3e1ca8f10053","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 15, Iss 2, Pp 961-71 (2018)","raw_type":"article"},{"id":"pmh:oai:kops.uni-konstanz.de:123456789/42911","is_oa":true,"landing_page_url":"http://nbn-resolving.de/urn:nbn:de:bsz:352-2-ubppf39uxy6q4","pdf_url":null,"source":{"id":"https://openalex.org/S4306401487","display_name":"KOPS (University of Konstanz)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I189712700","host_organization_name":"University of Konstanz","host_organization_lineage":["https://openalex.org/I189712700"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of integrative bioinformatics. 2018, 15(2), 20180003. eISSN 1613-4516. Verf\u00fcgbar unter: doi: 10.1515/jib-2018-0003","raw_type":"doc-type:article"},{"id":"pmh:oai:pub.uni-bielefeld.de:2930278","is_oa":true,"landing_page_url":"https://nbn-resolving.org/urn:nbn:de:0070-pub-29302788","pdf_url":null,"source":{"id":"https://openalex.org/S4306401624","display_name":"Publikationen an der Universit\u00e4t Bielefeld (Universit\u00e4t Bielefeld)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"http://purl.org/coar/resource_type/c_6501"}],"best_oa_location":{"id":"doi:10.1515/jib-2018-0003","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2018-0003","pdf_url":"https://www.degruyter.com/downloadpdf/journals/jib/15/2/article-20180003.pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","ki-jl-1","medline","norway-1"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[{"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7","score":0.8299999833106995}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2842599072.pdf","grobid_xml":"https://content.openalex.org/works/W2842599072.grobid-xml"},"referenced_works_count":67,"referenced_works":["https://openalex.org/W1484811165","https://openalex.org/W1536606897","https://openalex.org/W1551346473","https://openalex.org/W1583363398","https://openalex.org/W1855243629","https://openalex.org/W1966078827","https://openalex.org/W1966966240","https://openalex.org/W1972494229","https://openalex.org/W1974035453","https://openalex.org/W1984750217","https://openalex.org/W1990633019","https://openalex.org/W1992412606","https://openalex.org/W1992858116","https://openalex.org/W1992928135","https://openalex.org/W1994179061","https://openalex.org/W1994982193","https://openalex.org/W2018460741","https://openalex.org/W2021795499","https://openalex.org/W2022235653","https://openalex.org/W2022518115","https://openalex.org/W2024075993","https://openalex.org/W2029088347","https://openalex.org/W2033633537","https://openalex.org/W2037881456","https://openalex.org/W2040890820","https://openalex.org/W2042332702","https://openalex.org/W2043747098","https://openalex.org/W2054358220","https://openalex.org/W2064114008","https://openalex.org/W2064173118","https://openalex.org/W2069165179","https://openalex.org/W2071633123","https://openalex.org/W2073171115","https://openalex.org/W2082221311","https://openalex.org/W2082741628","https://openalex.org/W2084969445","https://openalex.org/W2088040887","https://openalex.org/W2093775834","https://openalex.org/W2095132022","https://openalex.org/W2105135903","https://openalex.org/W2111420033","https://openalex.org/W2120425649","https://openalex.org/W2133569952","https://openalex.org/W2134369542","https://openalex.org/W2138154963","https://openalex.org/W2138760198","https://openalex.org/W2140831051","https://openalex.org/W2145184244","https://openalex.org/W2147762902","https://openalex.org/W2157165780","https://openalex.org/W2160666805","https://openalex.org/W2160901777","https://openalex.org/W2161810942","https://openalex.org/W2166847046","https://openalex.org/W2167279371","https://openalex.org/W2177263492","https://openalex.org/W2186562241","https://openalex.org/W2751857862","https://openalex.org/W2776406038","https://openalex.org/W2885039969","https://openalex.org/W2950427239","https://openalex.org/W3020970682","https://openalex.org/W3105436227","https://openalex.org/W3150248096","https://openalex.org/W4236463097","https://openalex.org/W4296180459","https://openalex.org/W6628910274"],"related_works":["https://openalex.org/W4245886947","https://openalex.org/W3091210963","https://openalex.org/W357792208","https://openalex.org/W2985039358","https://openalex.org/W3134104726","https://openalex.org/W2003174432","https://openalex.org/W2024595986","https://openalex.org/W2056168326","https://openalex.org/W2531569923","https://openalex.org/W4239420026"],"abstract_inverted_index":{"The":[0,121,158,172],"structural":[1,52,85,105],"modeling":[2,100,169],"and":[3,15,64,86,97,104],"representation":[4,27,37],"of":[5,38],"cells":[6],"is":[7,46,55,81,107,127,178],"a":[8,25,41,51,93],"complex":[9],"task":[10],"as":[11,68,70,124],"different":[12],"microscopic,":[13],"spectroscopic":[14],"other":[16],"information":[17,59,106],"resources":[18],"have":[19],"to":[20,23,32],"be":[21,134],"combined":[22],"achieve":[24],"three-dimensional":[26],"with":[28,83,109],"high":[29],"accuracy.":[30],"Moreover,":[31],"provide":[33],"an":[34,125,147],"appropriate":[35],"spatial":[36],"the":[39,75,90,98,112,128,144,165,176],"cell,":[40],"stereoscopic":[42],"3D":[43,145,168],"(S3D)":[44],"visualization":[45],"favorable.":[47],"In":[48],"this":[49],"work,":[50],"cell":[53,79,94],"model":[54],"created":[56,152],"by":[57,116,163],"combining":[58],"from":[60,71],"various":[61],"light":[62],"microscopic":[63,66],"electron":[65],"images":[67],"well":[69],"publication-related":[72],"data.":[73],"At":[74],"mesoscopic":[76],"level":[77,92,114],"each":[78],"component":[80],"presented":[82],"special":[84],"visual":[87],"properties;":[88],"at":[89,111,156],"molecular":[91],"membrane":[95],"composition":[96],"underlying":[99],"method":[101],"are":[102],"discussed;":[103],"correlated":[108],"those":[110],"functional":[113],"(represented":[115],"simplified":[117],"energy-producing":[118],"metabolic":[119],"pathways).":[120],"organism":[122],"used":[123],"example":[126],"unicellular":[129],"Chlamydomonas":[130],"reinhardtii,":[131],"which":[132,153],"might":[133],"important":[135],"in":[136],"future":[137],"alternative":[138],"energy":[139],"production":[140],"processes.":[141],"Based":[142],"on":[143],"model,":[146],"educative":[148],"S3D":[149],"animation":[150,177],"was":[151,154,161],"shown":[155],"conferences.":[157],"complete":[159],"workflow":[160],"accomplished":[162],"using":[164],"open":[166],"source":[167],"software":[170],"Blender.":[171],"discussed":[173],"project":[174],"including":[175],"available":[179],"from:":[180],"http://Cm5.CELLmicrocosmos.org.":[181]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2}],"updated_date":"2026-09-11T09:22:31.653822","created_date":"2018-07-19T00:00:00"}