{"id":"https://openalex.org/W2917708447","doi":"https://doi.org/10.1515/jib-2018-0001","title":"Synthetic Biology Open Language (SBOL) Version 2.2.0","display_name":"Synthetic Biology Open Language (SBOL) Version 2.2.0","publication_year":2018,"publication_date":"2018-04-02","ids":{"openalex":"https://openalex.org/W2917708447","doi":"https://doi.org/10.1515/jib-2018-0001","mag":"2917708447","pmid":"https://pubmed.ncbi.nlm.nih.gov/29605823"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2018-0001","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2018-0001","pdf_url":"http://www.degruyter.com/downloadpdf/j/jib.2018.15.issue-1/jib-2018-0001/jib-2018-0001.xml","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"http://www.degruyter.com/downloadpdf/j/jib.2018.15.issue-1/jib-2018-0001/jib-2018-0001.xml","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042765353","display_name":"Robert Sidney Cox","orcid":"https://orcid.org/0000-0002-2009-6236"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Robert Sidney Cox","raw_affiliation_strings":["Prospect Bio, Brisbane, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Prospect Bio, Brisbane, CA, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047908665","display_name":"Curtis Madsen","orcid":"https://orcid.org/0000-0002-0254-0364"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Curtis Madsen","raw_affiliation_strings":["Boston University, Boston, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Boston University, Boston, MA, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086364805","display_name":"James Alastair McLaughlin","orcid":"https://orcid.org/0000-0002-8361-2795"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"James Alastair McLaughlin","raw_affiliation_strings":["Newcastle University, Newcastle, United Kingdom of Great Britain and Northern Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Newcastle University, Newcastle, United Kingdom of Great Britain and Northern Ireland","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028414498","display_name":"Tramy Nguyen","orcid":"https://orcid.org/0000-0002-8035-0259"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tramy Nguyen","raw_affiliation_strings":["University of Utah, Salt Lake City, UT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Utah, Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082955901","display_name":"Nicholas Roehner","orcid":"https://orcid.org/0000-0003-4957-1552"},"institutions":[{"id":"https://openalex.org/I1306686416","display_name":"RTX (United States)","ror":"https://ror.org/0354t7b78","country_code":"US","type":"company","lineage":["https://openalex.org/I1306686416"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicholas Roehner","raw_affiliation_strings":["Raytheon BBN Technologies, Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Raytheon BBN Technologies, Cambridge, MA, USA","institution_ids":["https://openalex.org/I1306686416"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070268735","display_name":"Bryan Bartley","orcid":"https://orcid.org/0000-0002-1597-4022"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bryan Bartley","raw_affiliation_strings":["University of Washington, Seattle, WA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Washington, Seattle, WA, USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020446837","display_name":"Jacob Beal","orcid":"https://orcid.org/0000-0002-1663-5102"},"institutions":[{"id":"https://openalex.org/I1306686416","display_name":"RTX (United States)","ror":"https://ror.org/0354t7b78","country_code":"US","type":"company","lineage":["https://openalex.org/I1306686416"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jacob Beal","raw_affiliation_strings":["Raytheon BBN Technologies, Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Raytheon BBN Technologies, Cambridge, MA, USA","institution_ids":["https://openalex.org/I1306686416"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110399445","display_name":"M.G. Bissell","orcid":null},"institutions":[{"id":"https://openalex.org/I4210093679","display_name":"Amyris (United States)","ror":"https://ror.org/00js7c390","country_code":"US","type":"company","lineage":["https://openalex.org/I4210093679"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Bissell","raw_affiliation_strings":["Amyris, Inc., Emeryville, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Amyris, Inc., Emeryville, CA, USA","institution_ids":["https://openalex.org/I4210093679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009998609","display_name":"Kiri Choi","orcid":"https://orcid.org/0000-0002-0156-8410"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kiri Choi","raw_affiliation_strings":["University of Washington, Seattle, WA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Washington, Seattle, WA, USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057992451","display_name":"Kevin Clancy","orcid":null},"institutions":[{"id":"https://openalex.org/I4210142480","display_name":"Thermo Fisher Scientific (United States)","ror":"https://ror.org/03x1ewr52","country_code":"US","type":"company","lineage":["https://openalex.org/I4210142480"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kevin Clancy","raw_affiliation_strings":["ThermoFisher Scientific, San Diego, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ThermoFisher Scientific, San Diego, CA, USA","institution_ids":["https://openalex.org/I4210142480"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037127624","display_name":"Raik Gr\u00fcnberg","orcid":"https://orcid.org/0000-0001-9532-6043"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Raik Gr\u00fcnberg","raw_affiliation_strings":["King Abdullah University for Science and Technology, Thuwal, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"King Abdullah University for Science and Technology, Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041469151","display_name":"Chris Macklin","orcid":null},"institutions":[{"id":"https://openalex.org/I4210093679","display_name":"Amyris (United States)","ror":"https://ror.org/00js7c390","country_code":"US","type":"company","lineage":["https://openalex.org/I4210093679"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chris Macklin","raw_affiliation_strings":["Amyris, Inc., Emeryville, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Amyris, Inc., Emeryville, CA, USA","institution_ids":["https://openalex.org/I4210093679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028639846","display_name":"G\u00f6ksel M\u0131s\u0131rl\u0131","orcid":"https://orcid.org/0000-0002-2454-7188"},"institutions":[{"id":"https://openalex.org/I56007636","display_name":"Keele University","ror":"https://ror.org/00340yn33","country_code":"GB","type":"education","lineage":["https://openalex.org/I56007636"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Goksel Misirli","raw_affiliation_strings":["Keele University, Keele, Staffordshire, United Kingdom of Great Britain and Northern Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Keele University, Keele, Staffordshire, United Kingdom of Great Britain and Northern Ireland","institution_ids":["https://openalex.org/I56007636"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044567758","display_name":"Ernst Oberortner","orcid":"https://orcid.org/0000-0002-4287-5513"},"institutions":[{"id":"https://openalex.org/I196679689","display_name":"Joint Genome Institute","ror":"https://ror.org/04xm1d337","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I196679689","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ernst Oberortner","raw_affiliation_strings":["DOE Joint Genome Institute, Walnut Creek, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DOE Joint Genome Institute, Walnut Creek, CA, USA","institution_ids":["https://openalex.org/I196679689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109242321","display_name":"Matthew Pocock","orcid":null},"institutions":[{"id":"https://openalex.org/I125680101","display_name":"Turing Institute","ror":"https://ror.org/02x2mw849","country_code":"GB","type":"facility","lineage":["https://openalex.org/I125680101"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Matthew Pocock","raw_affiliation_strings":["Turing Ate My Hamster LTD, Newcastle, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Turing Ate My Hamster LTD, Newcastle, UK","institution_ids":["https://openalex.org/I125680101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029481422","display_name":"Meher Samineni","orcid":null},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Meher Samineni","raw_affiliation_strings":["University of Utah, Salt Lake City, UT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Utah, Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100612832","display_name":"Michael Zhang","orcid":"https://orcid.org/0000-0002-1084-6734"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Zhang","raw_affiliation_strings":["University of Utah, Salt Lake City, UT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Utah, Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100662940","display_name":"Zhen Zhang","orcid":"https://orcid.org/0000-0001-9866-4523"},"institutions":[{"id":"https://openalex.org/I121980950","display_name":"Utah State University","ror":"https://ror.org/00h6set76","country_code":"US","type":"education","lineage":["https://openalex.org/I121980950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhen Zhang","raw_affiliation_strings":["Utah State University, Logan, UT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Utah State University, Logan, UT, USA","institution_ids":["https://openalex.org/I121980950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072564435","display_name":"Zach Zundel","orcid":"https://orcid.org/0000-0003-1355-6721"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zach Zundel","raw_affiliation_strings":["University of Utah, Salt Lake City, UT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Utah, Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010618664","display_name":"John H. Gennari","orcid":"https://orcid.org/0000-0001-8254-4957"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John H. Gennari","raw_affiliation_strings":["University of Washington, Seattle, WA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Washington, Seattle, WA, USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111386695","display_name":"Chris J. Myers","orcid":null},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Chris Myers","raw_affiliation_strings":["University of Utah, Salt Lake City, UT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Utah, Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044484291","display_name":"Herbert M. Sauro","orcid":"https://orcid.org/0000-0002-3659-6817"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Herbert Sauro","raw_affiliation_strings":["University of Washington, Seattle, WA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Washington, Seattle, WA, USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089978830","display_name":"Anil Wipat","orcid":"https://orcid.org/0000-0001-7310-4191"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Anil Wipat","raw_affiliation_strings":["Newcastle University, Newcastle, United Kingdom of Great Britain and Northern Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Newcastle University, Newcastle, United Kingdom of Great Britain and Northern Ireland","institution_ids":["https://openalex.org/I84884186"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":23,"corresponding_author_ids":["https://openalex.org/A5111386695"],"corresponding_institution_ids":["https://openalex.org/I223532165"],"apc_list":null,"apc_paid":null,"fwci":2.8767,"has_fulltext":true,"cited_by_count":33,"citation_normalized_percentile":{"value":0.91991595,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"15","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9049000144004822,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/synthetic-biology","display_name":"Synthetic biology","score":0.7602258324623108},{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.7025966048240662},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6950374841690063},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.6020837426185608},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5746957063674927},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4375538229942322},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4292840361595154},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3899584710597992},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.22197428345680237},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.19842630624771118},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19535109400749207}],"concepts":[{"id":"https://openalex.org/C191908910","wikidata":"https://www.wikidata.org/wiki/Q862838","display_name":"Synthetic biology","level":2,"score":0.7602258324623108},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.7025966048240662},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6950374841690063},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.6020837426185608},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5746957063674927},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4375538229942322},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4292840361595154},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3899584710597992},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.22197428345680237},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.19842630624771118},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19535109400749207},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017408","descriptor_name":"Guidelines as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017408","descriptor_name":"Guidelines as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017408","descriptor_name":"Guidelines as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1515/jib-2018-0001","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2018-0001","pdf_url":"http://www.degruyter.com/downloadpdf/j/jib.2018.15.issue-1/jib-2018-0001/jib-2018-0001.xml","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29605823","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29605823","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:5327987","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6167039","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:osti.gov:1544297","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1544297","pdf_url":"https://www.osti.gov/servlets/purl/1544297","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:doaj.org/article:7eae06626bfd4c8bbac1781f827e1a85","is_oa":true,"landing_page_url":"https://doaj.org/article/7eae06626bfd4c8bbac1781f827e1a85","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 15, Iss 1 (2018)","raw_type":"article"},{"id":"pmh:oai:eprints.keele.ac.uk:4811","is_oa":true,"landing_page_url":"http://eprints.keele.ac.uk/4811/1/G%20Misirili%20-%20Synthetic%20Biology%20Open%20Language%20%28SBOL%29%20Version%202.2.0.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306402149","display_name":"Keele Research Repository (Keele University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I56007636","host_organization_name":"Keele University","host_organization_lineage":["https://openalex.org/I56007636"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/627543","is_oa":false,"landing_page_url":"http://hdl.handle.net/10754/627543","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1515/jib-2018-0001","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2018-0001","pdf_url":"http://www.degruyter.com/downloadpdf/j/jib.2018.15.issue-1/jib-2018-0001/jib-2018-0001.xml","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2917708447.pdf","grobid_xml":"https://content.openalex.org/works/W2917708447.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W1671780265","https://openalex.org/W2044952215","https://openalex.org/W2060184615","https://openalex.org/W2091731123","https://openalex.org/W2134759932","https://openalex.org/W2316537542","https://openalex.org/W2751696165","https://openalex.org/W4298862541"],"related_works":["https://openalex.org/W2057769265","https://openalex.org/W2338895903","https://openalex.org/W1911418903","https://openalex.org/W3044523069","https://openalex.org/W2024161258","https://openalex.org/W2136248167","https://openalex.org/W2126646394","https://openalex.org/W2211443823","https://openalex.org/W3144585500","https://openalex.org/W4211049090"],"abstract_inverted_index":{"Synthetic":[0],"biology":[1,63],"builds":[2,103],"upon":[3,104],"the":[4,20,52,75,159,164],"techniques":[5],"and":[6,12,39,77,121,151],"successes":[7],"of":[8,22,37,54,79,100,154],"genetics,":[9],"molecular":[10],"biology,":[11,85],"metabolic":[13],"engineering":[14,17],"by":[15,91],"applying":[16],"principles":[18],"to":[19,44,50,73,130,138,157],"design":[21,81,126,149],"biological":[23,80],"systems.":[24],"The":[25,61],"field":[26],"still":[27],"faces":[28],"substantial":[29],"challenges,":[30],"including":[31],"long":[32],"development":[33],"times,":[34],"high":[35],"rates":[36],"failure,":[38],"poor":[40],"reproducibility.":[41],"One":[42],"method":[43],"ameliorate":[45],"these":[46],"problems":[47],"would":[48],"be":[49],"improve":[51],"exchange":[53,78],"information":[55,82],"about":[56],"designed":[57],"systems":[58],"between":[59],"laboratories.":[60],"synthetic":[62,84],"open":[64],"language":[65],"(SBOL)":[66],"has":[67],"been":[68],"developed":[69],"as":[70,142],"a":[71,87,135,144,152,155],"standard":[72],"support":[74,131],"specification":[76],"in":[83,108],"filling":[86],"need":[88],"not":[89],"satisfied":[90],"other":[92],"pre-existing":[93],"standards.":[94],"This":[95],"document":[96],"details":[97],"version":[98,105],"2.2.0":[99,117],"SBOL":[101,116,165],"that":[102],"2.1.0":[106],"published":[107],"last":[109],"year's":[110],"JIB":[111],"special":[112],"issue.":[113],"In":[114],"particular,":[115],"includes":[118],"improved":[119],"description":[120,153],"validation":[122],"rules":[123],"for":[124,147],"genetic":[125,133,148],"provenance,":[127],"an":[128],"extension":[129],"combinatorial":[132],"designs,":[134],"new":[136,145],"class":[137,146],"add":[139],"non-SBOL":[140],"data":[141,166],"attachments,":[143],"implementations,":[150],"methodology":[156],"describe":[158],"entire":[160],"design-build-test-learn":[161],"cycle":[162],"within":[163],"model.":[167]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":7}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
