{"id":"https://openalex.org/W4237725837","doi":"https://doi.org/10.1515/jib-2017-0080","title":"The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core","display_name":"The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core","publication_year":2018,"publication_date":"2018-04-26","ids":{"openalex":"https://openalex.org/W4237725837","doi":"https://doi.org/10.1515/jib-2017-0080"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2017-0080","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2017-0080","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2017-0080/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://www.degruyter.com/document/doi/10.1515/jib-2017-0080/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016716446","display_name":"Michael Hucka","orcid":"https://orcid.org/0000-0001-9105-5960"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Hucka","raw_affiliation_strings":["California Institute of Technology, Pasadena, CA, USA"],"affiliations":[{"raw_affiliation_string":"California Institute of Technology, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076617999","display_name":"Frank Bergmann","orcid":"https://orcid.org/0000-0001-5553-4702"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Frank T. Bergmann","raw_affiliation_strings":["California Institute of Technology, Pasadena, CA, USA"],"affiliations":[{"raw_affiliation_string":"California Institute of Technology, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065854572","display_name":"Andreas Dr\u00e4ger","orcid":"https://orcid.org/0000-0002-1240-5553"},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Dr\u00e4ger","raw_affiliation_strings":["Applied Bioinformatics Group, Center for Bioinformatics T\u00fcbingen (ZBIT), University of T\u00fcbingen, Sand 14, Office # C320, 72076 T\u00fcbingen, Germany"],"affiliations":[{"raw_affiliation_string":"Applied Bioinformatics Group, Center for Bioinformatics T\u00fcbingen (ZBIT), University of T\u00fcbingen, Sand 14, Office # C320, 72076 T\u00fcbingen, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003260987","display_name":"Stefan Hoops","orcid":null},"institutions":[{"id":"https://openalex.org/I4210151352","display_name":"Biocom","ror":"https://ror.org/03ymdxs56","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210151352"]},{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stefan Hoops","raw_affiliation_strings":["Biocomplexity Institute of Virginia Tech, Blacksburg, Va 24061, USA"],"affiliations":[{"raw_affiliation_string":"Biocomplexity Institute of Virginia Tech, Blacksburg, Va 24061, USA","institution_ids":["https://openalex.org/I859038795","https://openalex.org/I4210151352"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049649026","display_name":"Sarah Keating","orcid":"https://orcid.org/0000-0002-3356-3542"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sarah M. Keating","raw_affiliation_strings":["European Bioinformatics Institute, Hinxton, Cambridge, United Kingdom of Great Britain and Northern Ireland"],"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute, Hinxton, Cambridge, United Kingdom of Great Britain and Northern Ireland","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112438594","display_name":"Nicolas Le Nov\u00e8re","orcid":null},"institutions":[{"id":"https://openalex.org/I1302113299","display_name":"Babraham Institute","ror":"https://ror.org/01d5qpn59","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1302113299","https://openalex.org/I2799693246","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nicolas Le Nov\u00e8re","raw_affiliation_strings":["Babraham Institute, Cambridge, Cambridgeshire, United Kingdom of Great Britain and Northern Ireland"],"affiliations":[{"raw_affiliation_string":"Babraham Institute, Cambridge, Cambridgeshire, United Kingdom of Great Britain and Northern Ireland","institution_ids":["https://openalex.org/I1302113299"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111386695","display_name":"Chris J. Myers","orcid":null},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chris J. Myers","raw_affiliation_strings":["University of Utah, Salt Lake City, UT, USA"],"affiliations":[{"raw_affiliation_string":"University of Utah, Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050779826","display_name":"Brett G. Olivier","orcid":"https://orcid.org/0000-0002-5293-5321"},"institutions":[{"id":"https://openalex.org/I865915315","display_name":"Vrije Universiteit Amsterdam","ror":"https://ror.org/008xxew50","country_code":"NL","type":"education","lineage":["https://openalex.org/I865915315"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Brett G. Olivier","raw_affiliation_strings":["Vrije Universiteit Amsterdam, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Vrije Universiteit Amsterdam, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I865915315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111964760","display_name":"Sven Sahle","orcid":null},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sven Sahle","raw_affiliation_strings":["University of Heidelberg, Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"University of Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027644564","display_name":"James C. Schaff","orcid":"https://orcid.org/0000-0003-3286-7736"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James C. Schaff","raw_affiliation_strings":["University of Connecticut, Storrs, CT, USA"],"affiliations":[{"raw_affiliation_string":"University of Connecticut, Storrs, CT, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067339679","display_name":"Lucian P. Smith","orcid":"https://orcid.org/0000-0001-7002-6386"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Lucian P. Smith","raw_affiliation_strings":["University of Washington, Seattle, WA, USA"],"affiliations":[{"raw_affiliation_string":"University of Washington, Seattle, WA, USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103188993","display_name":"Dagmar Waltemath","orcid":"https://orcid.org/0000-0002-5886-5563"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dagmar Waltemath","raw_affiliation_strings":["University of Rostock, Rostock, Germany"],"affiliations":[{"raw_affiliation_string":"University of Rostock, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011926448","display_name":"Darren J. Wilkinson","orcid":"https://orcid.org/0000-0003-0736-802X"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Darren J. Wilkinson","raw_affiliation_strings":["Newcastle University, Newcastle, United Kingdom of Great Britain and Northern Ireland"],"affiliations":[{"raw_affiliation_string":"Newcastle University, Newcastle, United Kingdom of Great Britain and Northern Ireland","institution_ids":["https://openalex.org/I84884186"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5067339679"],"corresponding_institution_ids":["https://openalex.org/I201448701"],"apc_list":null,"apc_paid":null,"fwci":2.234,"has_fulltext":true,"cited_by_count":43,"citation_normalized_percentile":{"value":0.8906683,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"15","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9861999750137329,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sbml","display_name":"SBML","score":0.9921607971191406},{"id":"https://openalex.org/keywords/markup-language","display_name":"Markup language","score":0.9011971950531006},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8178153038024902},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.7198392748832703},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.4839820861816406},{"id":"https://openalex.org/keywords/ruleml","display_name":"RuleML","score":0.48246437311172485},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4206865429878235},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3929888904094696},{"id":"https://openalex.org/keywords/xhtml","display_name":"XHTML","score":0.2710524797439575},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.14604035019874573}],"concepts":[{"id":"https://openalex.org/C87186988","wikidata":"https://www.wikidata.org/wiki/Q452197","display_name":"SBML","level":4,"score":0.9921607971191406},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.9011971950531006},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8178153038024902},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.7198392748832703},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.4839820861816406},{"id":"https://openalex.org/C196388810","wikidata":"https://www.wikidata.org/wiki/Q631877","display_name":"RuleML","level":5,"score":0.48246437311172485},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4206865429878235},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3929888904094696},{"id":"https://openalex.org/C189139006","wikidata":"https://www.wikidata.org/wiki/Q166074","display_name":"XHTML","level":4,"score":0.2710524797439575},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.14604035019874573}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1515/jib-2017-0080","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2017-0080","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2017-0080/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:5327985","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6167037","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:3192135e252e4b9cac0e17037b36f922","is_oa":true,"landing_page_url":"https://doaj.org/article/3192135e252e4b9cac0e17037b36f922","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 15, Iss 1 (2018)","raw_type":"article"},{"id":"pmh:vu:oai:research.vu.nl:publications/d5353c98-caa4-4ff4-a0cf-abfd075792a0","is_oa":false,"landing_page_url":"https://research.vu.nl/en/publications/d5353c98-caa4-4ff4-a0cf-abfd075792a0","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, 15(1), 1 - 174. Informationsmanagement in der Biotechnologie e.V. (IMBio e.V.)","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1515/jib-2017-0080","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2017-0080","pdf_url":"https://www.degruyter.com/document/doi/10.1515/jib-2017-0080/pdf","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G12401395","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G4611969921","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G4864544293","display_name":null,"funder_award_id":"Japan","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G5524522455","display_name":null,"funder_award_id":"DARPA","funder_id":"https://openalex.org/F4320338281","funder_display_name":"Army Research Office"},{"id":"https://openalex.org/G7485138276","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G7602723344","display_name":null,"funder_award_id":"GM07767","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G8044579487","display_name":null,"funder_award_id":"Japan","funder_id":"https://openalex.org/F4320320912","funder_display_name":"Ministry of Education, Culture, Sports, Science and Technology"},{"id":"https://openalex.org/G8102759201","display_name":null,"funder_award_id":"ERATO","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"}],"funders":[{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"},{"id":"https://openalex.org/F4320332180","display_name":"Defense Advanced Research Projects Agency","ror":"https://ror.org/02caytj08"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320334789","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320338112","display_name":"Exploratory Research for Advanced Technology","ror":null},{"id":"https://openalex.org/F4320338279","display_name":"Air Force Office of Scientific Research","ror":"https://ror.org/011e9bt93"},{"id":"https://openalex.org/F4320338281","display_name":"Army Research Office","ror":"https://ror.org/05epdh915"},{"id":"https://openalex.org/F4320338502","display_name":"Institute for Collaborative Biotechnologies","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4237725837.pdf","grobid_xml":"https://content.openalex.org/works/W4237725837.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W141058090","https://openalex.org/W597159796","https://openalex.org/W1499965417","https://openalex.org/W1525863646","https://openalex.org/W1633369931","https://openalex.org/W1905448311","https://openalex.org/W2020561965","https://openalex.org/W2056090982","https://openalex.org/W2061364094","https://openalex.org/W2070812389","https://openalex.org/W2085061065","https://openalex.org/W2122860350","https://openalex.org/W2128763542","https://openalex.org/W2138294949","https://openalex.org/W2139126750","https://openalex.org/W2145435867","https://openalex.org/W2150908245","https://openalex.org/W2155418451","https://openalex.org/W2157529519","https://openalex.org/W2170335512","https://openalex.org/W2297674424","https://openalex.org/W3097995899","https://openalex.org/W4285421256","https://openalex.org/W6629973648","https://openalex.org/W6630086920","https://openalex.org/W6635498272","https://openalex.org/W6640408758","https://openalex.org/W6641506132","https://openalex.org/W6665796822","https://openalex.org/W6684573637","https://openalex.org/W7024659363","https://openalex.org/W7024902556","https://openalex.org/W7029451798"],"related_works":["https://openalex.org/W2768131452","https://openalex.org/W4300880733","https://openalex.org/W4385386698","https://openalex.org/W1551863630","https://openalex.org/W2136793911","https://openalex.org/W1511946618","https://openalex.org/W2159912904","https://openalex.org/W2380917476","https://openalex.org/W2775767401","https://openalex.org/W2378177178"],"abstract_inverted_index":{"Abstract":[0],"Computational":[1],"models":[2,29,147,161],"can":[3,38,76],"help":[4],"researchers":[5],"to":[6,157,171],"interpret":[7],"data,":[8],"understand":[9],"biological":[10,45],"functions,":[11],"and":[12,64,91,99,144,165,180,187],"make":[13],"quantitative":[14],"predictions.":[15],"The":[16,117],"Systems":[17],"Biology":[18],"Markup":[19,132],"Language":[20],"(SBML)":[21],"is":[22,41],"a":[23,31,54,84,93],"file":[24],"format":[25,173],"for":[26,88,97,106],"representing":[27],"computational":[28],"in":[30,51,128,148],"declarative":[32],"form":[33],"that":[34,136],"different":[35,74],"software":[36,188],"systems":[37],"exchange.":[39],"SBML":[40,69,113,142,149,193],"oriented":[42],"towards":[43],"describing":[44],"processes":[46],"of":[47,56,83,109,112,140,146,160,174,178,183],"the":[48,104,120,138,158,172,176,181,192],"sort":[49],"common":[50,94],"research":[52],"on":[53,79],"number":[55],"topics,":[57],"including":[58],"metabolic":[59],"pathways,":[60,63],"cell":[61],"signaling":[62],"many":[65],"others.":[66],"By":[67],"supporting":[68],"as":[70],"an":[71,80,141],"input/output":[72],"format,":[73],"tools":[75],"all":[77],"operate":[78],"identical":[81],"representation":[82],"model,":[85],"removing":[86],"opportunities":[87],"translation":[89],"errors":[90],"assuring":[92],"starting":[95],"point":[96],"analyses":[98],"simulations.":[100],"This":[101],"document":[102],"provides":[103],"specification":[105,118],"Release":[107,163,166],"2":[108],"Version":[110],"1":[111,164],"Level":[114],"3":[115],"Core.":[116],"defines":[119],"data":[121],"structures":[122],"prescribed":[123],"by":[124],"SBML,":[125],"their":[126],"encoding":[127],"XML":[129],"(the":[130],"eXtensible":[131],"Language),":[133],"validation":[134],"rules":[135],"determine":[137],"validity":[139],"document,":[143],"examples":[145],"form.":[150],"No":[151],"design":[152],"changes":[153,168],"have":[154],"been":[155],"made":[156],"description":[159],"between":[162],"2;":[167],"are":[169,189],"restricted":[170],"annotations,":[175],"correction":[177],"errata":[179],"addition":[182],"clarifications.":[184],"Other":[185],"materials":[186],"available":[190],"from":[191],"project":[194],"website":[195],"at":[196],"http://sbml.org/":[197],".":[198]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
