{"id":"https://openalex.org/W2798197662","doi":"https://doi.org/10.1515/jib-2017-0072","title":"BIOPYDB: A Dynamic Human Cell Specific Biochemical Pathway Database with Advanced Computational Analyses Platform","display_name":"BIOPYDB: A Dynamic Human Cell Specific Biochemical Pathway Database with Advanced Computational Analyses Platform","publication_year":2018,"publication_date":"2018-03-16","ids":{"openalex":"https://openalex.org/W2798197662","doi":"https://doi.org/10.1515/jib-2017-0072","mag":"2798197662","pmid":"https://pubmed.ncbi.nlm.nih.gov/29547394"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2017-0072","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2017-0072","pdf_url":"http://www.degruyter.com/downloadpdf/j/jib.2018.15.issue-3/jib-2017-0072/jib-2017-0072.xml","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"http://www.degruyter.com/downloadpdf/j/jib.2018.15.issue-3/jib-2017-0072/jib-2017-0072.xml","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023247552","display_name":"Saikat Chowdhury","orcid":"https://orcid.org/0000-0002-0783-3959"},"institutions":[{"id":"https://openalex.org/I3125981224","display_name":"National Chemical Laboratory","ror":"https://ror.org/057mn3690","country_code":"IN","type":"facility","lineage":["https://openalex.org/I2799351866","https://openalex.org/I3125981224","https://openalex.org/I4210134808","https://openalex.org/I66760702"]},{"id":"https://openalex.org/I99364266","display_name":"Academy of Scientific and Innovative Research","ror":"https://ror.org/053rcsq61","country_code":"IN","type":"education","lineage":["https://openalex.org/I99364266"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Saikat Chowdhury","raw_affiliation_strings":["Academy of Scientific and Innovative Research (AcSIR) , CSIR-NCL Campus , Pune, Maharashtra 411008 , India","CSIR- National Chemical Laboratory , Chemical Engineering and Process Development Division , Pune, Maharashtra 411008 , India"],"raw_orcid":"https://orcid.org/0000-0002-0783-3959","affiliations":[{"raw_affiliation_string":"Academy of Scientific and Innovative Research (AcSIR) , CSIR-NCL Campus , Pune, Maharashtra 411008 , India","institution_ids":["https://openalex.org/I99364266"]},{"raw_affiliation_string":"CSIR- National Chemical Laboratory , Chemical Engineering and Process Development Division , Pune, Maharashtra 411008 , India","institution_ids":["https://openalex.org/I3125981224"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027373269","display_name":"Noopur Sinha","orcid":"https://orcid.org/0000-0002-7494-8174"},"institutions":[{"id":"https://openalex.org/I3125981224","display_name":"National Chemical Laboratory","ror":"https://ror.org/057mn3690","country_code":"IN","type":"facility","lineage":["https://openalex.org/I2799351866","https://openalex.org/I3125981224","https://openalex.org/I4210134808","https://openalex.org/I66760702"]},{"id":"https://openalex.org/I99364266","display_name":"Academy of Scientific and Innovative Research","ror":"https://ror.org/053rcsq61","country_code":"IN","type":"education","lineage":["https://openalex.org/I99364266"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Noopur Sinha","raw_affiliation_strings":["Academy of Scientific and Innovative Research (AcSIR) , CSIR-NCL Campus , Pune, Maharashtra 411008 , India","CSIR- National Chemical Laboratory , Chemical Engineering and Process Development Division , Pune, Maharashtra 411008 , India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academy of Scientific and Innovative Research (AcSIR) , CSIR-NCL Campus , Pune, Maharashtra 411008 , India","institution_ids":["https://openalex.org/I99364266"]},{"raw_affiliation_string":"CSIR- National Chemical Laboratory , Chemical Engineering and Process Development Division , Pune, Maharashtra 411008 , India","institution_ids":["https://openalex.org/I3125981224"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009843580","display_name":"Piyali Ganguli","orcid":"https://orcid.org/0000-0002-9670-3928"},"institutions":[{"id":"https://openalex.org/I3125981224","display_name":"National Chemical Laboratory","ror":"https://ror.org/057mn3690","country_code":"IN","type":"facility","lineage":["https://openalex.org/I2799351866","https://openalex.org/I3125981224","https://openalex.org/I4210134808","https://openalex.org/I66760702"]},{"id":"https://openalex.org/I99364266","display_name":"Academy of Scientific and Innovative Research","ror":"https://ror.org/053rcsq61","country_code":"IN","type":"education","lineage":["https://openalex.org/I99364266"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Piyali Ganguli","raw_affiliation_strings":["Academy of Scientific and Innovative Research (AcSIR) , CSIR-NCL Campus , Pune, Maharashtra 411008 , India","CSIR- National Chemical Laboratory , Chemical Engineering and Process Development Division , Pune, Maharashtra 411008 , India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academy of Scientific and Innovative Research (AcSIR) , CSIR-NCL Campus , Pune, Maharashtra 411008 , India","institution_ids":["https://openalex.org/I99364266"]},{"raw_affiliation_string":"CSIR- National Chemical Laboratory , Chemical Engineering and Process Development Division , Pune, Maharashtra 411008 , India","institution_ids":["https://openalex.org/I3125981224"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064068780","display_name":"Rupa Bhowmick","orcid":"https://orcid.org/0000-0001-5812-0513"},"institutions":[{"id":"https://openalex.org/I3125981224","display_name":"National Chemical Laboratory","ror":"https://ror.org/057mn3690","country_code":"IN","type":"facility","lineage":["https://openalex.org/I2799351866","https://openalex.org/I3125981224","https://openalex.org/I4210134808","https://openalex.org/I66760702"]},{"id":"https://openalex.org/I99364266","display_name":"Academy of Scientific and Innovative Research","ror":"https://ror.org/053rcsq61","country_code":"IN","type":"education","lineage":["https://openalex.org/I99364266"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Rupa Bhowmick","raw_affiliation_strings":["Academy of Scientific and Innovative Research (AcSIR) , CSIR-NCL Campus , Pune, Maharashtra 411008 , India","CSIR- National Chemical Laboratory , Chemical Engineering and Process Development Division , Pune, Maharashtra 411008 , India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academy of Scientific and Innovative Research (AcSIR) , CSIR-NCL Campus , Pune, Maharashtra 411008 , India","institution_ids":["https://openalex.org/I99364266"]},{"raw_affiliation_string":"CSIR- National Chemical Laboratory , Chemical Engineering and Process Development Division , Pune, Maharashtra 411008 , India","institution_ids":["https://openalex.org/I3125981224"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102303021","display_name":"Vidhi Singh","orcid":null},"institutions":[{"id":"https://openalex.org/I3125981224","display_name":"National Chemical Laboratory","ror":"https://ror.org/057mn3690","country_code":"IN","type":"facility","lineage":["https://openalex.org/I2799351866","https://openalex.org/I3125981224","https://openalex.org/I4210134808","https://openalex.org/I66760702"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Vidhi Singh","raw_affiliation_strings":["CSIR- National Chemical Laboratory , Chemical Engineering and Process Development Division , Pune, Maharashtra 411008 , India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CSIR- National Chemical Laboratory , Chemical Engineering and Process Development Division , Pune, Maharashtra 411008 , India","institution_ids":["https://openalex.org/I3125981224"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061459353","display_name":"Sutanu Nandi","orcid":"https://orcid.org/0000-0003-2778-2666"},"institutions":[{"id":"https://openalex.org/I3125981224","display_name":"National Chemical Laboratory","ror":"https://ror.org/057mn3690","country_code":"IN","type":"facility","lineage":["https://openalex.org/I2799351866","https://openalex.org/I3125981224","https://openalex.org/I4210134808","https://openalex.org/I66760702"]},{"id":"https://openalex.org/I99364266","display_name":"Academy of Scientific and Innovative Research","ror":"https://ror.org/053rcsq61","country_code":"IN","type":"education","lineage":["https://openalex.org/I99364266"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Sutanu Nandi","raw_affiliation_strings":["Academy of Scientific and Innovative Research (AcSIR) , CSIR-NCL Campus , Pune, Maharashtra 411008 , India","CSIR- National Chemical Laboratory , Chemical Engineering and Process Development Division , Pune, Maharashtra 411008 , India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academy of Scientific and Innovative Research (AcSIR) , CSIR-NCL Campus , Pune, Maharashtra 411008 , India","institution_ids":["https://openalex.org/I99364266"]},{"raw_affiliation_string":"CSIR- National Chemical Laboratory , Chemical Engineering and Process Development Division , Pune, Maharashtra 411008 , India","institution_ids":["https://openalex.org/I3125981224"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091792722","display_name":"Ram Rup Sarkar","orcid":"https://orcid.org/0000-0001-7115-163X"},"institutions":[{"id":"https://openalex.org/I3125981224","display_name":"National Chemical Laboratory","ror":"https://ror.org/057mn3690","country_code":"IN","type":"facility","lineage":["https://openalex.org/I2799351866","https://openalex.org/I3125981224","https://openalex.org/I4210134808","https://openalex.org/I66760702"]},{"id":"https://openalex.org/I99364266","display_name":"Academy of Scientific and Innovative Research","ror":"https://ror.org/053rcsq61","country_code":"IN","type":"education","lineage":["https://openalex.org/I99364266"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Ram Rup Sarkar","raw_affiliation_strings":["Academy of Scientific and Innovative Research (AcSIR) , CSIR-NCL Campus , Pune, Maharashtra 411008 , India","CSIR- National Chemical Laboratory , Chemical Engineering and Process Development Division , Pune, Maharashtra 411008 , India"],"raw_orcid":"https://orcid.org/0000-0001-7115-163X","affiliations":[{"raw_affiliation_string":"Academy of Scientific and Innovative Research (AcSIR) , CSIR-NCL Campus , Pune, Maharashtra 411008 , India","institution_ids":["https://openalex.org/I99364266"]},{"raw_affiliation_string":"CSIR- National Chemical Laboratory , Chemical Engineering and Process Development Division , Pune, Maharashtra 411008 , India","institution_ids":["https://openalex.org/I3125981224"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5091792722"],"corresponding_institution_ids":["https://openalex.org/I3125981224","https://openalex.org/I99364266"],"apc_list":null,"apc_paid":null,"fwci":0.2783,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.56487624,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"15","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7361230254173279},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.624759316444397},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3429167866706848},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14511606097221375}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7361230254173279},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.624759316444397},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3429167866706848},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14511606097221375}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1515/jib-2017-0072","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2017-0072","pdf_url":"http://www.degruyter.com/downloadpdf/j/jib.2018.15.issue-3/jib-2017-0072/jib-2017-0072.xml","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmid:29547394","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29547394","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:7f102a2ec5af45c59834ef9b111f5970","is_oa":false,"landing_page_url":"https://doaj.org/article/7f102a2ec5af45c59834ef9b111f5970","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 15, Iss 3, Pp 1662-4 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5328686","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6340122","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"doi:10.25504/fairsharing.anr6qz","is_oa":true,"landing_page_url":"https://doi.org/10.25504/fairsharing.anr6qz","pdf_url":null,"source":{"id":"https://openalex.org/S7407053452","display_name":"FAIRsharing.org","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"}],"best_oa_location":{"id":"doi:10.1515/jib-2017-0072","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2017-0072","pdf_url":"http://www.degruyter.com/downloadpdf/j/jib.2018.15.issue-3/jib-2017-0072/jib-2017-0072.xml","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.47999998927116394,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G3343572980","display_name":null,"funder_award_id":"EMR/2016/000516 Dated 19-12-2016","funder_id":"https://openalex.org/F4320334771","funder_display_name":"Science and Engineering Research Board"},{"id":"https://openalex.org/G6817199982","display_name":null,"funder_award_id":"BSC0121 and BSC0114","funder_id":"https://openalex.org/F4320320721","funder_display_name":"Council of Scientific and Industrial Research, India"}],"funders":[{"id":"https://openalex.org/F4320320721","display_name":"Council of Scientific and Industrial Research, India","ror":"https://ror.org/021wm7p51"},{"id":"https://openalex.org/F4320334771","display_name":"Science and Engineering Research Board","ror":"https://ror.org/03ffdsr55"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":61,"referenced_works":["https://openalex.org/W229097380","https://openalex.org/W1509926796","https://openalex.org/W1562318351","https://openalex.org/W1842847600","https://openalex.org/W1969709265","https://openalex.org/W1972172786","https://openalex.org/W1977198605","https://openalex.org/W1978486653","https://openalex.org/W2008007187","https://openalex.org/W2008195525","https://openalex.org/W2010502047","https://openalex.org/W2026595489","https://openalex.org/W2031218556","https://openalex.org/W2034150699","https://openalex.org/W2035809306","https://openalex.org/W2061751549","https://openalex.org/W2082948758","https://openalex.org/W2084034229","https://openalex.org/W2090342688","https://openalex.org/W2092755129","https://openalex.org/W2095521407","https://openalex.org/W2096766502","https://openalex.org/W2100980426","https://openalex.org/W2103450164","https://openalex.org/W2103454055","https://openalex.org/W2115416706","https://openalex.org/W2117513900","https://openalex.org/W2118258530","https://openalex.org/W2119387367","https://openalex.org/W2120714068","https://openalex.org/W2122863289","https://openalex.org/W2128601422","https://openalex.org/W2133465414","https://openalex.org/W2134771103","https://openalex.org/W2140000393","https://openalex.org/W2142302575","https://openalex.org/W2143750395","https://openalex.org/W2147714160","https://openalex.org/W2148866288","https://openalex.org/W2150908245","https://openalex.org/W2151852639","https://openalex.org/W2153921000","https://openalex.org/W2155653061","https://openalex.org/W2159482845","https://openalex.org/W2161378694","https://openalex.org/W2163480486","https://openalex.org/W2163485494","https://openalex.org/W2165253681","https://openalex.org/W2171567979","https://openalex.org/W2171599819","https://openalex.org/W2239090104","https://openalex.org/W2312381546","https://openalex.org/W2474747771","https://openalex.org/W2496492870","https://openalex.org/W2537623931","https://openalex.org/W2558586574","https://openalex.org/W2605068739","https://openalex.org/W2798197662","https://openalex.org/W4232430026","https://openalex.org/W4237293127","https://openalex.org/W4300831640"],"related_works":["https://openalex.org/W2065180665","https://openalex.org/W2391990482","https://openalex.org/W1501344239","https://openalex.org/W2356233976","https://openalex.org/W2374348909","https://openalex.org/W2369009739","https://openalex.org/W2357769479","https://openalex.org/W3004832935","https://openalex.org/W3017281951","https://openalex.org/W2361224859"],"abstract_inverted_index":{"BIOPYDB:":[0],"BIOchemical":[1],"PathwaY":[2],"DataBase":[3],"is":[4,161],"developed":[5],"as":[6],"a":[7,88],"manually":[8],"curated,":[9],"readily":[10],"updatable,":[11],"dynamic":[12],"resource":[13],"of":[14,33,44,64,91,103,153],"human":[15],"cell":[16],"specific":[17],"pathway":[18,28,48,59,66,98,104,127,154],"information":[19,119],"along":[20],"with":[21,47,108],"integrated":[22,124],"computational":[23,69,84],"platform":[24,125],"to":[25,86,117,143,150,165],"perform":[26],"various":[27],"analyses.":[29],"Presently,":[30],"it":[31,145],"comprises":[32],"46":[34],"pathways,":[35],"3189":[36],"molecules,":[37],"5742":[38],"reactions":[39],"and":[40,56,68,75,83,106,111,130,136,148,169],"6897":[41],"different":[42],"types":[43],"diseases":[45],"linked":[46],"proteins,":[49],"which":[50],"are":[51,133],"referred":[52],"by":[53],"520":[54],"literatures":[55],"17":[57],"other":[58,109,121],"databases.":[60],"With":[61],"its":[62],"repertoire":[63],"biochemical":[65],"data,":[67],"tools":[70],"for":[71,126,171],"performing":[72],"Topological,":[73],"Logical":[74],"Dynamic":[76],"analyses,":[77],"BIOPYDB":[78],"offers":[79],"both":[80],"the":[81,95,134,151,166],"experimental":[82],"biologists":[85],"acquire":[87],"comprehensive":[89],"understanding":[90],"signaling":[92],"cascades":[93],"in":[94,140],"cells.":[96],"Automated":[97],"image":[99],"reconstruction,":[100],"cross":[101],"referencing":[102],"molecules":[105],"interactions":[107],"databases":[110],"literature":[112],"sources,":[113],"complex":[114],"search":[115],"operations":[116],"extract":[118],"from":[120],"similar":[122],"resources,":[123],"data":[128],"sharing":[129],"computation,":[131],"etc.":[132],"novel":[135],"useful":[137],"features":[138],"included":[139],"this":[141,173],"database":[142,174],"make":[144],"more":[146,175],"acceptable":[147],"attractive":[149],"users":[152,168],"research":[155],"communities.":[156],"The":[157],"RESTful":[158],"API":[159],"service":[160],"also":[162],"made":[163],"available":[164],"advanced":[167],"developers":[170],"accessing":[172],"conveniently":[176],"through":[177],"their":[178],"own":[179],"computer":[180],"programmes.":[181]},"counts_by_year":[{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2026-05-20T08:49:12.498775","created_date":"2018-04-24T00:00:00"}
