{"id":"https://openalex.org/W2626450606","doi":"https://doi.org/10.1515/jib-2017-0016","title":"Using Docker Compose for the Simple Deployment of an Integrated Drug Target Screening Platform","display_name":"Using Docker Compose for the Simple Deployment of an Integrated Drug Target Screening Platform","publication_year":2017,"publication_date":"2017-06-10","ids":{"openalex":"https://openalex.org/W2626450606","doi":"https://doi.org/10.1515/jib-2017-0016","mag":"2626450606","pmid":"https://pubmed.ncbi.nlm.nih.gov/28600904"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2017-0016","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2017-0016","pdf_url":"http://www.degruyter.com/downloadpdf/j/jib.2017.14.issue-2/jib-2017-0016/jib-2017-0016.xml","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"http://www.degruyter.com/downloadpdf/j/jib.2017.14.issue-2/jib-2017-0016/jib-2017-0016.xml","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035928806","display_name":"Markus List","orcid":null},"institutions":[{"id":"https://openalex.org/I4210109712","display_name":"Max Planck Institute for Informatics","ror":"https://ror.org/01w19ak89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210109712"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Markus List","raw_affiliation_strings":["Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarland Informatics Campus, 66123 Saarbr\u00fccken, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarland Informatics Campus, 66123 Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I4210109712"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5035928806"],"corresponding_institution_ids":["https://openalex.org/I4210109712"],"apc_list":null,"apc_paid":null,"fwci":2.7799,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.92841935,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"14","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9749000072479248,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9742000102996826,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7666036486625671},{"id":"https://openalex.org/keywords/container","display_name":"Container (type theory)","score":0.7617351412773132},{"id":"https://openalex.org/keywords/software-deployment","display_name":"Software deployment","score":0.7152752876281738},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6442561149597168},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6264286041259766},{"id":"https://openalex.org/keywords/virtualization","display_name":"Virtualization","score":0.6108910441398621},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.475445955991745},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4668232798576355},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.4464977979660034},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.22526779770851135},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10466018319129944},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.10449057817459106}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7666036486625671},{"id":"https://openalex.org/C2781018962","wikidata":"https://www.wikidata.org/wiki/Q5164884","display_name":"Container (type theory)","level":2,"score":0.7617351412773132},{"id":"https://openalex.org/C105339364","wikidata":"https://www.wikidata.org/wiki/Q2297740","display_name":"Software deployment","level":2,"score":0.7152752876281738},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6442561149597168},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6264286041259766},{"id":"https://openalex.org/C513985346","wikidata":"https://www.wikidata.org/wiki/Q270471","display_name":"Virtualization","level":3,"score":0.6108910441398621},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.475445955991745},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4668232798576355},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.4464977979660034},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.22526779770851135},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10466018319129944},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.10449057817459106},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004353","descriptor_name":"Drug Evaluation, Preclinical","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057166","descriptor_name":"High-Throughput Screening Assays","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1515/jib-2017-0016","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2017-0016","pdf_url":"http://www.degruyter.com/downloadpdf/j/jib.2017.14.issue-2/jib-2017-0016/jib-2017-0016.xml","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28600904","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28600904","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:670961252bda462eaf4210bd06f1f75c","is_oa":true,"landing_page_url":"https://doaj.org/article/670961252bda462eaf4210bd06f1f75c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 14, Iss 2, Pp 643-7 (2017)","raw_type":"article"},{"id":"pmh:oai:escidoc.org:escidoc:2475417","is_oa":true,"landing_page_url":"http://hdl.handle.net/11858/00-001M-0000-002D-DDE3-6","pdf_url":null,"source":{"id":"https://openalex.org/S7407052962","display_name":"Max Planck Digital Library","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:5327964","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6042832","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1515/jib-2017-0016","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2017-0016","pdf_url":"http://www.degruyter.com/downloadpdf/j/jib.2017.14.issue-2/jib-2017-0016/jib-2017-0016.xml","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5899999737739563,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320323799","display_name":"Syddansk Universitet","ror":"https://ror.org/03yrrjy16"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2626450606.pdf","grobid_xml":"https://content.openalex.org/works/W2626450606.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1578795360","https://openalex.org/W1921615383","https://openalex.org/W1959107924","https://openalex.org/W2013434113","https://openalex.org/W2019439169","https://openalex.org/W2095761757","https://openalex.org/W2099305058","https://openalex.org/W2183646828","https://openalex.org/W2200964112","https://openalex.org/W2214694321","https://openalex.org/W2300136894","https://openalex.org/W2314821163","https://openalex.org/W2345657688","https://openalex.org/W2346143774","https://openalex.org/W2469374272","https://openalex.org/W2474227261","https://openalex.org/W2518297337","https://openalex.org/W2531396307","https://openalex.org/W2567153465"],"related_works":["https://openalex.org/W4224016441","https://openalex.org/W4312092272","https://openalex.org/W3177403549","https://openalex.org/W3203508616","https://openalex.org/W2401070491","https://openalex.org/W2593917729","https://openalex.org/W3165056771","https://openalex.org/W2784930977","https://openalex.org/W2028085523","https://openalex.org/W2182393594"],"abstract_inverted_index":{"Docker":[0,21,46,81,105,139],"virtualization":[1],"allows":[2],"for":[3,142],"software":[4,40,55,71,93],"tools":[5,72,123],"to":[6,16,58,68,84,103,110],"be":[7,85,108],"executed":[8],"in":[9,124,158],"an":[10,101,125],"isolated":[11],"and":[12,41,87,154],"controlled":[13],"environment":[14],"referred":[15],"as":[17,27],"a":[18,116,138,143],"container.":[19],"In":[20],"containers,":[22],"dependencies":[23],"are":[24],"provided":[25],"exactly":[26],"intended":[28],"by":[29,114,135],"the":[30,36,92,130],"developer":[31],"and,":[32],"consequently,":[33],"they":[34],"simplify":[35],"distribution":[37],"of":[38,132,137,149,162],"scientific":[39],"foster":[42],"reproducible":[43],"research.":[44],"The":[45],"paradigm":[47],"is":[48,65],"that":[49,120],"each":[50],"container":[51],"encapsulates":[52],"one":[53],"particular":[54],"tool.":[56],"However,":[57],"analyze":[59],"complex":[60],"biomedical":[61],"data":[62],"sets,":[63],"it":[64],"often":[66],"necessary":[67],"combine":[69],"several":[70,80,122],"into":[73],"elaborate":[74],"workflows.":[75],"To":[76],"address":[77],"this":[78,133],"challenge,":[79],"containers":[82],"need":[83],"instantiated":[86],"properly":[88],"integrated,":[89],"which":[90],"complicates":[91],"deployment":[94],"process":[95],"unnecessarily.":[96],"Here,":[97],"we":[98],"demonstrate":[99,129],"how":[100],"extension":[102],"Docker,":[104],"compose,":[106],"can":[107],"used":[109],"mitigate":[111],"these":[112],"problems":[113],"providing":[115],"unified":[117],"setup":[118,141],"routine":[119],"deploys":[121],"integrated":[126,151],"fashion.":[127],"We":[128],"power":[131],"approach":[134],"example":[136],"compose":[140],"drug":[144],"target":[145],"screening":[146],"platform":[147],"consisting":[148],"five":[150],"web":[152],"applications":[153],"shared":[155],"infrastructure,":[156],"deployable":[157],"just":[159],"two":[160],"lines":[161],"codes.":[163]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
