{"id":"https://openalex.org/W2732189888","doi":"https://doi.org/10.1515/jib-2017-0007","title":"Application of Computational Methods in Planaria Research: A Current Update","display_name":"Application of Computational Methods in Planaria Research: A Current Update","publication_year":2017,"publication_date":"2017-07-06","ids":{"openalex":"https://openalex.org/W2732189888","doi":"https://doi.org/10.1515/jib-2017-0007","mag":"2732189888","pmid":"https://pubmed.ncbi.nlm.nih.gov/28682786"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2017-0007","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2017-0007","pdf_url":"http://www.degruyter.com/downloadpdf/j/jib.2017.14.issue-4/jib-2017-0007/jib-2017-0007.xml","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"http://www.degruyter.com/downloadpdf/j/jib.2017.14.issue-4/jib-2017-0007/jib-2017-0007.xml","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022813914","display_name":"Shyamasree Ghosh","orcid":"https://orcid.org/0000-0001-9601-1350"},"institutions":[{"id":"https://openalex.org/I163389970","display_name":"National Institute of Science Education and Research","ror":"https://ror.org/02r2k1c68","country_code":"IN","type":"education","lineage":["https://openalex.org/I163389970","https://openalex.org/I200207707"]},{"id":"https://openalex.org/I200207707","display_name":"Homi Bhabha National Institute","ror":"https://ror.org/02bv3zr67","country_code":"IN","type":"education","lineage":["https://openalex.org/I200207707"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Shyamasree Ghosh","raw_affiliation_strings":["School of Biological Sciences, National Institute of Science Education and Research (NISER), Bhubaneswar, Odisha 752050, India; and Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai 400094, India","Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai 400094, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biological Sciences, National Institute of Science Education and Research (NISER), Bhubaneswar, Odisha 752050, India; and Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai 400094, India","institution_ids":["https://openalex.org/I163389970","https://openalex.org/I200207707"]},{"raw_affiliation_string":"Homi Bhabha National Institute, Training School Complex, Anushakti Nagar, Mumbai 400094, India","institution_ids":["https://openalex.org/I200207707"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5022813914"],"corresponding_institution_ids":["https://openalex.org/I163389970","https://openalex.org/I200207707"],"apc_list":null,"apc_paid":null,"fwci":0.1122,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.50531537,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"14","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12789","display_name":"Planarian Biology and Electrostimulation","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12789","display_name":"Planarian Biology and Electrostimulation","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12213","display_name":"Marine Ecology and Invasive Species","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/2306","display_name":"Global and Planetary Change"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12813","display_name":"Plant and Biological Electrophysiology Studies","score":0.9810000061988831,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/planaria","display_name":"Planaria","score":0.9903812408447266},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6571139097213745},{"id":"https://openalex.org/keywords/flatworm","display_name":"Flatworm","score":0.6245203018188477},{"id":"https://openalex.org/keywords/planarian","display_name":"Planarian","score":0.5977342128753662},{"id":"https://openalex.org/keywords/regeneration","display_name":"Regeneration (biology)","score":0.5961964726448059},{"id":"https://openalex.org/keywords/model-organism","display_name":"Model organism","score":0.5003302097320557},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.429457426071167},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.23949262499809265},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.16018208861351013},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13706153631210327},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.124482661485672}],"concepts":[{"id":"https://openalex.org/C2777113906","wikidata":"https://www.wikidata.org/wiki/Q2855014","display_name":"Planaria","level":3,"score":0.9903812408447266},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6571139097213745},{"id":"https://openalex.org/C2781355164","wikidata":"https://www.wikidata.org/wiki/Q124900","display_name":"Flatworm","level":2,"score":0.6245203018188477},{"id":"https://openalex.org/C2775935104","wikidata":"https://www.wikidata.org/wiki/Q6502673","display_name":"Planarian","level":3,"score":0.5977342128753662},{"id":"https://openalex.org/C171056886","wikidata":"https://www.wikidata.org/wiki/Q193119","display_name":"Regeneration (biology)","level":2,"score":0.5961964726448059},{"id":"https://openalex.org/C19843653","wikidata":"https://www.wikidata.org/wiki/Q213907","display_name":"Model organism","level":3,"score":0.5003302097320557},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.429457426071167},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.23949262499809265},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.16018208861351013},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13706153631210327},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.124482661485672}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010932","descriptor_name":"Planarians","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010932","descriptor_name":"Planarians","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010932","descriptor_name":"Planarians","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1515/jib-2017-0007","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2017-0007","pdf_url":"http://www.degruyter.com/downloadpdf/j/jib.2017.14.issue-4/jib-2017-0007/jib-2017-0007.xml","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28682786","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28682786","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:24b4ac09788d4fab916ae90798a0c077","is_oa":false,"landing_page_url":"https://doaj.org/article/24b4ac09788d4fab916ae90798a0c077","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 14, Iss 4, Pp 1763-1777 (2017)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5327939","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6042806","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1515/jib-2017-0007","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2017-0007","pdf_url":"http://www.degruyter.com/downloadpdf/j/jib.2017.14.issue-4/jib-2017-0007/jib-2017-0007.xml","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320327905","display_name":"National Institute of Science Education and Research","ror":"https://ror.org/02r2k1c68"},{"id":"https://openalex.org/F4320329802","display_name":"Homi Bhabha National Institute","ror":"https://ror.org/02bv3zr67"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2732189888.pdf","grobid_xml":"https://content.openalex.org/works/W2732189888.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W607236675","https://openalex.org/W1973986070","https://openalex.org/W1977046333","https://openalex.org/W1992683617","https://openalex.org/W2033227337","https://openalex.org/W2036472089","https://openalex.org/W2060878901","https://openalex.org/W2077514957","https://openalex.org/W2082418604","https://openalex.org/W2083871097","https://openalex.org/W2089140785","https://openalex.org/W2093867414","https://openalex.org/W2111984642","https://openalex.org/W2125738657","https://openalex.org/W2142911915","https://openalex.org/W2161671321","https://openalex.org/W2168257801","https://openalex.org/W2262790410","https://openalex.org/W4239549628"],"related_works":["https://openalex.org/W4315707189","https://openalex.org/W2947157228","https://openalex.org/W2969806122","https://openalex.org/W2522196581","https://openalex.org/W4296330684","https://openalex.org/W4323645067","https://openalex.org/W2924337408","https://openalex.org/W2245081172","https://openalex.org/W2143638877","https://openalex.org/W2982113108"],"abstract_inverted_index":{"Planaria":[0,167,198],"is":[1,37,125,162,170],"a":[2,27,115,126,163],"member":[3],"of":[4,15,50,55,60,75,83,88,97,118,133,140,144,147,152,184,191],"the":[5,12,48,174,178,182],"Phylum":[6,84],"Platyhelminthes":[7],"including":[8],"flatworms.":[9],"Planarians":[10,79],"possess":[11],"unique":[13],"ability":[14],"regeneration":[16,31,51,160],"from":[17,52],"adult":[18],"stem":[19,70],"cells":[20],"or":[21],"neoblasts":[22],"and":[23,32,58,73,90,110,123,194],"finds":[24],"importance":[25],"as":[26],"model":[28],"organism":[29],"for":[30,138],"developmental":[33],"studies.":[34],"Although":[35],"research":[36,168],"being":[38],"actively":[39],"carried":[40],"out":[41],"globally":[42],"through":[43],"conventional":[44],"methods":[45],"to":[46,69,100,104],"understand":[47],"process":[49],"neoblasts,":[53],"biology":[54,96],"development,":[56],"neurobiology":[57],"immunology":[59],"Planaria,":[61],"there":[62],"are":[63,102],"many":[64],"thought":[65],"provoking":[66],"questions":[67],"related":[68],"cell":[71],"plasticity,":[72],"uniqueness":[74],"regenerative":[76],"potential":[77],"in":[78,107,149,166,176,189,197],"amongst":[80],"other":[81],"members":[82],"Platyhelminthes.":[85],"The":[86],"complexity":[87],"receptors":[89],"signalling":[91],"mechanisms,":[92],"immune":[93],"system":[94],"network,":[95],"repair,":[98],"responses":[99],"injury":[101],"yet":[103],"be":[105],"understood":[106],"Planaria.":[108],"Genomic":[109],"transcriptomic":[111,141],"studies":[112],"have":[113],"generated":[114],"vast":[116],"repository":[117],"data,":[119,142],"but":[120],"their":[121,195,200],"availability":[122],"analysis":[124,139],"challenging":[127],"task.":[128],"Data":[129],"mining,":[130],"computational":[131,192],"approaches":[132],"gene":[134],"curation,":[135],"bioinformatics":[136],"tools":[137,193],"designing":[143,190],"databases,":[145],"application":[146],"algorithms":[148],"deciphering":[150],"changes":[151],"morphology":[153],"by":[154],"RNA":[155],"interference":[156],"(RNAi)":[157],"approaches,":[158],"understanding":[159,177],"experiments":[161],"new":[164],"venture":[165],"that":[169],"helping":[171],"researchers":[172],"across":[173],"globe":[175],"biology.":[179,202],"We":[180],"highlight":[181],"applications":[183,196],"Hidden":[185],"Markov":[186],"models":[187],"(HMMs)":[188],"decoding":[199],"complex":[201]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
