{"id":"https://openalex.org/W2615230386","doi":"https://doi.org/10.1515/jib-2017-0001","title":"Systematic Prediction of the Impacts of Mutations in MicroRNA Seed Sequences","display_name":"Systematic Prediction of the Impacts of Mutations in MicroRNA Seed Sequences","publication_year":2017,"publication_date":"2017-03-01","ids":{"openalex":"https://openalex.org/W2615230386","doi":"https://doi.org/10.1515/jib-2017-0001","mag":"2615230386","pmid":"https://pubmed.ncbi.nlm.nih.gov/28637929"},"language":"en","primary_location":{"id":"doi:10.1515/jib-2017-0001","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2017-0001","pdf_url":"http://www.degruyter.com/downloadpdf/j/jib.2017.14.issue-1/jib-2017-0001/jib-2017-0001.xml","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"http://www.degruyter.com/downloadpdf/j/jib.2017.14.issue-1/jib-2017-0001/jib-2017-0001.xml","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054710911","display_name":"Anindya Bhattacharya","orcid":"https://orcid.org/0000-0002-2853-8078"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Anindya Bhattacharya","raw_affiliation_strings":["Department of Computer Science and Engineering , University of California , San Diego , CA 92093 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering , University of California , San Diego , CA 92093 , USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027995560","display_name":"Yan Cui","orcid":"https://orcid.org/0000-0002-7577-6845"},"institutions":[{"id":"https://openalex.org/I160606119","display_name":"University of Tennessee Health Science Center","ror":"https://ror.org/0011qv509","country_code":"US","type":"education","lineage":["https://openalex.org/I160606119"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yan Cui","raw_affiliation_strings":["Center for Integrative and Translational Genomics , University of Tennessee Health Science Center , Memphis , TN 38163 , USA","Department of Microbiology , Immunology and Biochemistry , University of Tennessee Health Science Center , Memphis , TN 38163 , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Integrative and Translational Genomics , University of Tennessee Health Science Center , Memphis , TN 38163 , USA","institution_ids":["https://openalex.org/I160606119"]},{"raw_affiliation_string":"Department of Microbiology , Immunology and Biochemistry , University of Tennessee Health Science Center , Memphis , TN 38163 , USA","institution_ids":["https://openalex.org/I160606119"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5027995560","https://openalex.org/A5054710911"],"corresponding_institution_ids":["https://openalex.org/I160606119","https://openalex.org/I36258959"],"apc_list":null,"apc_paid":null,"fwci":0.4558,"has_fulltext":false,"cited_by_count":22,"citation_normalized_percentile":{"value":0.59923764,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"14","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.5950844883918762},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5279946327209473},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5216763019561768},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3403734266757965},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.29267504811286926},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1811249852180481}],"concepts":[{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.5950844883918762},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5279946327209473},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5216763019561768},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3403734266757965},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.29267504811286926},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1811249852180481}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017354","descriptor_name":"Point Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017354","descriptor_name":"Point Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017354","descriptor_name":"Point Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1515/jib-2017-0001","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2017-0001","pdf_url":"http://www.degruyter.com/downloadpdf/j/jib.2017.14.issue-1/jib-2017-0001/jib-2017-0001.xml","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},{"id":"pmid:28637929","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28637929","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of integrative bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:0a0ec9d6fdb6467180adfd5e38312144","is_oa":true,"landing_page_url":"https://doaj.org/article/0a0ec9d6fdb6467180adfd5e38312144","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Integrative Bioinformatics, Vol 14, Iss 1, Pp 323-32 (2017)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5327933","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6042800","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1515/jib-2017-0001","is_oa":true,"landing_page_url":"https://doi.org/10.1515/jib-2017-0001","pdf_url":"http://www.degruyter.com/downloadpdf/j/jib.2017.14.issue-1/jib-2017-0001/jib-2017-0001.xml","source":{"id":"https://openalex.org/S4393917359","display_name":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","issn_l":"1432-4385","issn":["1432-4385","1613-4516"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Integrative Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2615230386.pdf","grobid_xml":"https://content.openalex.org/works/W2615230386.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1595524810","https://openalex.org/W1917905880","https://openalex.org/W1966045532","https://openalex.org/W1979285004","https://openalex.org/W2022133540","https://openalex.org/W2049907435","https://openalex.org/W2065802121","https://openalex.org/W2075137678","https://openalex.org/W2077327925","https://openalex.org/W2088140119","https://openalex.org/W2091798624","https://openalex.org/W2100761975","https://openalex.org/W2103087022","https://openalex.org/W2105726151","https://openalex.org/W2115440941","https://openalex.org/W2120456037","https://openalex.org/W2121374778","https://openalex.org/W2122732537","https://openalex.org/W2123938528","https://openalex.org/W2128049108","https://openalex.org/W2134629862","https://openalex.org/W2137999492","https://openalex.org/W2150699891","https://openalex.org/W2160582045","https://openalex.org/W2187894234","https://openalex.org/W2222637300","https://openalex.org/W2223404005","https://openalex.org/W2224886296","https://openalex.org/W2524823205","https://openalex.org/W2530992098","https://openalex.org/W2556558158","https://openalex.org/W2918086501"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W2117258802"],"abstract_inverted_index":{"MicroRNAs":[0],"are":[1,9],"a":[2,31,68,93],"class":[3],"of":[4,19,30,34,50,78,100,103],"small":[5],"non-coding":[6],"RNAs":[7],"that":[8],"involved":[10],"in":[11,42,85,111],"many":[12,25],"important":[13],"biological":[14],"processes":[15],"and":[16,57,106],"the":[17,48,75,80,97,101],"dysfunction":[18],"microRNA":[20,32,43,87,112],"has":[21],"been":[22],"associated":[23],"with":[24],"diseases.":[26],"The":[27,90],"seed":[28,44,88,113],"region":[29],"is":[33],"crucial":[35],"importance":[36],"to":[37,52,61,72],"its":[38],"target":[39,55,63],"recognition.":[40],"Mutations":[41],"regions":[45],"may":[46],"disrupt":[47],"binding":[49],"microRNAs":[51],"their":[53],"original":[54],"genes":[56],"make":[58],"them":[59],"bind":[60],"new":[62],"genes.":[64],"Here":[65],"we":[66],"use":[67],"knowledge-based":[69],"computational":[70],"method":[71],"systematically":[73],"predict":[74],"functional":[76,98],"effects":[77],"all":[79],"possible":[81,104],"single":[82,108],"nucleotide":[83,109],"mutations":[84,110],"human":[86],"regions.":[89,114],"result":[91],"provides":[92],"comprehensive":[94],"reference":[95],"for":[96],"assessment":[99],"impacts":[102],"natural":[105],"artificial":[107]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":7},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
