{"id":"https://openalex.org/W2792074609","doi":"https://doi.org/10.1515/bams-2017-0026","title":"Missing data in open-data era \u2013 a barrier to multiomics integration","display_name":"Missing data in open-data era \u2013 a barrier to multiomics integration","publication_year":2018,"publication_date":"2018-02-21","ids":{"openalex":"https://openalex.org/W2792074609","doi":"https://doi.org/10.1515/bams-2017-0026","mag":"2792074609"},"language":"en","primary_location":{"id":"doi:10.1515/bams-2017-0026","is_oa":false,"landing_page_url":"https://doi.org/10.1515/bams-2017-0026","pdf_url":null,"source":{"id":"https://openalex.org/S2764861201","display_name":"Bio-Algorithms and Med-Systems","issn_l":"1895-9091","issn":["1895-9091","1896-530X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310313990","host_organization_name":"De Gruyter","host_organization_lineage":["https://openalex.org/P4310313990"],"host_organization_lineage_names":["De Gruyter"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bio-Algorithms and Med-Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://ruj.uj.edu.pl/xmlui/handle/item/103377","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054698572","display_name":"Monika Piwowar","orcid":"https://orcid.org/0000-0003-4645-8730"},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Monika Piwowar","raw_affiliation_strings":["Department of Bioinformatics and Telemedicine , Medical College , Jagiellonian University , Krakow , Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Telemedicine , Medical College , Jagiellonian University , Krakow , Poland","institution_ids":["https://openalex.org/I126596746"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036884183","display_name":"Wiktor Jurkowski","orcid":"https://orcid.org/0000-0002-7820-1991"},"institutions":[{"id":"https://openalex.org/I2799300731","display_name":"Norwich Research Park","ror":"https://ror.org/0062dz060","country_code":"GB","type":"archive","lineage":["https://openalex.org/I2799300731"]},{"id":"https://openalex.org/I4210100714","display_name":"Earlham Institute","ror":"https://ror.org/018cxtf62","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210100714"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Wiktor Jurkowski","raw_affiliation_strings":["Earlham Institute, Norwich Research Park , Norwich, NR4 7UZ , United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Earlham Institute, Norwich Research Park , Norwich, NR4 7UZ , United Kingdom","institution_ids":["https://openalex.org/I2799300731","https://openalex.org/I4210100714"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5054698572"],"corresponding_institution_ids":["https://openalex.org/I126596746"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.01740715,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"14","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6456559300422668},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.643061637878418},{"id":"https://openalex.org/keywords/pace","display_name":"Pace","score":0.5623039603233337},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.5442017912864685},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.5438398122787476},{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.5377064347267151},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.45142263174057007},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3414720594882965},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2790231704711914},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.23429986834526062},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22149255871772766},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.09063348174095154}],"concepts":[{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6456559300422668},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.643061637878418},{"id":"https://openalex.org/C2777526511","wikidata":"https://www.wikidata.org/wiki/Q691543","display_name":"Pace","level":2,"score":0.5623039603233337},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.5442017912864685},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5438398122787476},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.5377064347267151},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.45142263174057007},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3414720594882965},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2790231704711914},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.23429986834526062},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22149255871772766},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.09063348174095154},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1515/bams-2017-0026","is_oa":false,"landing_page_url":"https://doi.org/10.1515/bams-2017-0026","pdf_url":null,"source":{"id":"https://openalex.org/S2764861201","display_name":"Bio-Algorithms and Med-Systems","issn_l":"1895-9091","issn":["1895-9091","1896-530X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310313990","host_organization_name":"De Gruyter","host_organization_lineage":["https://openalex.org/P4310313990"],"host_organization_lineage_names":["De Gruyter"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bio-Algorithms and Med-Systems","raw_type":"journal-article"},{"id":"pmh:oai:ruj.uj.edu.pl:item/103377","is_oa":true,"landing_page_url":"https://ruj.uj.edu.pl/xmlui/handle/item/103377","pdf_url":null,"source":{"id":"https://openalex.org/S4306400316","display_name":"Homo Politicus (Academy of Humanities and Economics in Lodz)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"artyku\u0142 w czasopi\u015bmie"},{"id":"pmh:oai:ruj.uj.edu.pl:item/128678","is_oa":true,"landing_page_url":"https://ruj.uj.edu.pl/xmlui/handle/item/128678","pdf_url":null,"source":{"id":"https://openalex.org/S4306401249","display_name":"Jagiellonian University Repository (Jagiellonian University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I126596746","host_organization_name":"Jagiellonian University","host_organization_lineage":["https://openalex.org/I126596746"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:ruj.uj.edu.pl:item/143201","is_oa":true,"landing_page_url":"https://ruj.uj.edu.pl/xmlui/handle/item/143201","pdf_url":null,"source":{"id":"https://openalex.org/S4306401249","display_name":"Jagiellonian University Repository (Jagiellonian University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I126596746","host_organization_name":"Jagiellonian University","host_organization_lineage":["https://openalex.org/I126596746"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:ruj.uj.edu.pl:item/103377","is_oa":true,"landing_page_url":"https://ruj.uj.edu.pl/xmlui/handle/item/103377","pdf_url":null,"source":{"id":"https://openalex.org/S4306400316","display_name":"Homo Politicus (Academy of Humanities and Economics in Lodz)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"artyku\u0142 w czasopi\u015bmie"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W4148366","https://openalex.org/W109152968","https://openalex.org/W112811424","https://openalex.org/W1606613710","https://openalex.org/W1933312866","https://openalex.org/W2096918186","https://openalex.org/W2108645007","https://openalex.org/W2118723841","https://openalex.org/W2142856425","https://openalex.org/W2154400571","https://openalex.org/W2155158051","https://openalex.org/W2167262186","https://openalex.org/W2302501749","https://openalex.org/W2310259903","https://openalex.org/W2464656245","https://openalex.org/W2472634300","https://openalex.org/W2520903792","https://openalex.org/W2554842798","https://openalex.org/W2622731880","https://openalex.org/W2623802897","https://openalex.org/W2729230076","https://openalex.org/W2743686253","https://openalex.org/W2753385986","https://openalex.org/W2767186676","https://openalex.org/W2767864849","https://openalex.org/W4229805339"],"related_works":["https://openalex.org/W2307569040","https://openalex.org/W2366067673","https://openalex.org/W2060096282","https://openalex.org/W2131941936","https://openalex.org/W2541393756","https://openalex.org/W2385643360","https://openalex.org/W4375944314","https://openalex.org/W2167730203","https://openalex.org/W1906884313","https://openalex.org/W3120201329"],"abstract_inverted_index":{"Abstract":[0],"The":[1,34],"exploration":[2],"of":[3,11,26,36,47,56,64,67,94,123,132,141,149,164],"complex":[4],"interactions":[5],"in":[6,15,20,91],"biological":[7,115,142,162],"systems":[8],"is":[9,23,171],"one":[10,74],"the":[12,31,45,92,114,124,130,145,147,159],"main":[13],"aims":[14],"nature":[16],"science":[17],"nowadays.":[18],"Progress":[19],"this":[21],"area":[22],"possible":[24],"because":[25],"high-throughput":[27],"omics":[28,59,150],"technologies":[29],"and":[30,97,102,138],"computational":[32,169],"surge.":[33],"development":[35,46,131],"analytical":[37],"methods":[38,50,136],"\u201cis":[39],"trying":[40],"to":[41],"keep":[42],"pace\u201d":[43],"with":[44,167],"molecular":[48],"biology":[49],"that":[51,69],"provide":[52],"increasingly":[53],"large":[54],"amounts":[55],"data":[57,83,111,134,153],"\u2013":[58],"data.":[60],"Specialized":[61],"databases":[62,81],"consist":[63],"ever-larger":[65],"collections":[66],"experiments":[68],"are":[70,106],"usually":[71],"conducted":[72],"by":[73,84],"next-generation":[75],"sequencing":[76],"technique":[77],"(e.g.":[78,99],"RNA-seq).":[79],"Other":[80],"integrate":[82,158],"defining":[85],"qualitative":[86,161],"relationships":[87,163],"between":[88],"individual":[89,165],"objects":[90],"form":[93],"ontologies,":[95],"interactions,":[96],"pathways":[98],"GO,":[100],"KEGG,":[101],"String).":[103],"However,":[104],"there":[105],"no":[107],"open-source":[108],"complementary":[109,151],"quantitative":[110,152],"sets":[112],"for":[113],"processes":[116],"studied,":[117],"including":[118],"information":[119],"from":[120],"many":[121],"levels":[122],"organism":[125],"organization,":[126],"which":[127,155],"would":[128,156],"allow":[129],"multidimensional":[133],"analysis":[135],"(multiscale":[137],"insightful":[139],"overviews":[140],"processes).":[143],"In":[144],"paper,":[146],"lack":[148],"set,":[154],"help":[157],"defined":[160],"biomolecules":[166],"statistical,":[168],"methods,":[170],"discussed.":[172]},"counts_by_year":[],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
