{"id":"https://openalex.org/W2607532876","doi":"https://doi.org/10.1515/bams-2017-0004","title":"The variability of protein structure with respect to the hydrophobic core","display_name":"The variability of protein structure with respect to the hydrophobic core","publication_year":2017,"publication_date":"2017-04-27","ids":{"openalex":"https://openalex.org/W2607532876","doi":"https://doi.org/10.1515/bams-2017-0004","mag":"2607532876"},"language":"en","primary_location":{"id":"doi:10.1515/bams-2017-0004","is_oa":false,"landing_page_url":"https://doi.org/10.1515/bams-2017-0004","pdf_url":null,"source":{"id":"https://openalex.org/S2764861201","display_name":"Bio-Algorithms and Med-Systems","issn_l":"1895-9091","issn":["1895-9091","1896-530X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310313990","host_organization_name":"De Gruyter","host_organization_lineage":["https://openalex.org/P4310313990"],"host_organization_lineage_names":["De Gruyter"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bio-Algorithms and Med-Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://ruj.uj.edu.pl/xmlui/handle/item/101548","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068559370","display_name":"Mateusz Banach","orcid":"https://orcid.org/0000-0003-1806-9877"},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Mateusz Banach","raw_affiliation_strings":["Department of Bioinformatics and Telemedicine , Jagiellonian University-Medical College , 31-530 Krakow , \u0141azarza 16 , Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Telemedicine , Jagiellonian University-Medical College , 31-530 Krakow , \u0141azarza 16 , Poland","institution_ids":["https://openalex.org/I126596746"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062765045","display_name":"Zdzis\u0142aw Wi\u015bniowski","orcid":"https://orcid.org/0000-0002-7278-6888"},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Zdzis\u0142aw Wi\u015bniowski","raw_affiliation_strings":["Department of Bioinformatics and Telemedicine , Jagiellonian University-Medical College , 31-530 Krakow , \u0141azarza 16 , Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Telemedicine , Jagiellonian University-Medical College , 31-530 Krakow , \u0141azarza 16 , Poland","institution_ids":["https://openalex.org/I126596746"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007069015","display_name":"Barbara Kalinowska","orcid":null},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Barbara Kalinowska","raw_affiliation_strings":["Faculty of Physics, Astronomy and Applied Computer Science , Jagiellonian University \u2013 \u0141ojasiewicza , Krakow , Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Physics, Astronomy and Applied Computer Science , Jagiellonian University \u2013 \u0141ojasiewicza , Krakow , Poland","institution_ids":["https://openalex.org/I126596746"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027144155","display_name":"Leszek Konieczny","orcid":null},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Leszek Konieczny","raw_affiliation_strings":["Chair of Medical Biochemistry , Jagiellonian University \u2013 Medical College , 31-034 Krakow , Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chair of Medical Biochemistry , Jagiellonian University \u2013 Medical College , 31-034 Krakow , Poland","institution_ids":["https://openalex.org/I126596746"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087239926","display_name":"Irena Roterman","orcid":"https://orcid.org/0000-0003-3652-9099"},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Irena Roterman","raw_affiliation_strings":["Department of Bioinformatics and Telemedicine , Jagiellonian University-Medical College , 31-530 Krakow , Lazarza 16 , Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Telemedicine , Jagiellonian University-Medical College , 31-530 Krakow , Lazarza 16 , Poland","institution_ids":["https://openalex.org/I126596746"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5087239926"],"corresponding_institution_ids":["https://openalex.org/I126596746"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.03316929,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"13","issue":"2","first_page":"63","last_page":"67"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11844","display_name":"Lipid metabolism and biosynthesis","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1303","display_name":"Biochemistry"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9797999858856201,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/core","display_name":"Core (optical fiber)","score":0.5193844437599182},{"id":"https://openalex.org/keywords/lattice-protein","display_name":"Lattice protein","score":0.518205463886261},{"id":"https://openalex.org/keywords/hydrophobic-effect","display_name":"Hydrophobic effect","score":0.46857213973999023},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.46209943294525146},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.4608364701271057},{"id":"https://openalex.org/keywords/drop","display_name":"Drop (telecommunication)","score":0.41653844714164734},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4157693684101105},{"id":"https://openalex.org/keywords/chemical-physics","display_name":"Chemical physics","score":0.36761343479156494},{"id":"https://openalex.org/keywords/crystallography","display_name":"Crystallography","score":0.3524039387702942},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.34749969840049744},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.27324286103248596},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24271729588508606},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.20736080408096313}],"concepts":[{"id":"https://openalex.org/C2164484","wikidata":"https://www.wikidata.org/wiki/Q5170150","display_name":"Core (optical fiber)","level":2,"score":0.5193844437599182},{"id":"https://openalex.org/C32598905","wikidata":"https://www.wikidata.org/wiki/Q6497130","display_name":"Lattice protein","level":3,"score":0.518205463886261},{"id":"https://openalex.org/C90260826","wikidata":"https://www.wikidata.org/wiki/Q899157","display_name":"Hydrophobic effect","level":2,"score":0.46857213973999023},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.46209943294525146},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.4608364701271057},{"id":"https://openalex.org/C2781345722","wikidata":"https://www.wikidata.org/wiki/Q5308388","display_name":"Drop (telecommunication)","level":2,"score":0.41653844714164734},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4157693684101105},{"id":"https://openalex.org/C159467904","wikidata":"https://www.wikidata.org/wiki/Q2001702","display_name":"Chemical physics","level":1,"score":0.36761343479156494},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.3524039387702942},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.34749969840049744},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.27324286103248596},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24271729588508606},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.20736080408096313},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1515/bams-2017-0004","is_oa":false,"landing_page_url":"https://doi.org/10.1515/bams-2017-0004","pdf_url":null,"source":{"id":"https://openalex.org/S2764861201","display_name":"Bio-Algorithms and Med-Systems","issn_l":"1895-9091","issn":["1895-9091","1896-530X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310313990","host_organization_name":"De Gruyter","host_organization_lineage":["https://openalex.org/P4310313990"],"host_organization_lineage_names":["De Gruyter"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bio-Algorithms and Med-Systems","raw_type":"journal-article"},{"id":"pmh:oai:ruj.uj.edu.pl:item/101548","is_oa":true,"landing_page_url":"https://ruj.uj.edu.pl/xmlui/handle/item/101548","pdf_url":null,"source":{"id":"https://openalex.org/S4306400316","display_name":"Homo Politicus (Academy of Humanities and Economics in Lodz)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"artyku\u0142 w czasopi\u015bmie"},{"id":"pmh:oai:ruj.uj.edu.pl:item/140971","is_oa":true,"landing_page_url":"https://ruj.uj.edu.pl/xmlui/handle/item/140971","pdf_url":null,"source":{"id":"https://openalex.org/S4306400316","display_name":"Homo Politicus (Academy of Humanities and Economics in Lodz)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"artyku\u0142 w czasopi\u015bmie"},{"id":"pmh:oai:ruj.uj.edu.pl:item/127988","is_oa":true,"landing_page_url":"https://ruj.uj.edu.pl/xmlui/handle/item/127988","pdf_url":null,"source":{"id":"https://openalex.org/S4306401249","display_name":"Jagiellonian University Repository (Jagiellonian University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I126596746","host_organization_name":"Jagiellonian University","host_organization_lineage":["https://openalex.org/I126596746"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:ruj.uj.edu.pl:item/101548","is_oa":true,"landing_page_url":"https://ruj.uj.edu.pl/xmlui/handle/item/101548","pdf_url":null,"source":{"id":"https://openalex.org/S4306400316","display_name":"Homo Politicus (Academy of Humanities and Economics in Lodz)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"artyku\u0142 w czasopi\u015bmie"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W140486678","https://openalex.org/W175377976","https://openalex.org/W1965555277","https://openalex.org/W1975798725","https://openalex.org/W1998490996","https://openalex.org/W2015796466","https://openalex.org/W2029476353","https://openalex.org/W2061762615","https://openalex.org/W2098464924","https://openalex.org/W2109801072","https://openalex.org/W2114441129","https://openalex.org/W2114981306","https://openalex.org/W2154479185","https://openalex.org/W2156954132","https://openalex.org/W2282801158","https://openalex.org/W2413132705","https://openalex.org/W4240895940"],"related_works":["https://openalex.org/W2087357042","https://openalex.org/W2059249958","https://openalex.org/W1582257194","https://openalex.org/W2033686357","https://openalex.org/W2283902998","https://openalex.org/W2068502989","https://openalex.org/W1797316357","https://openalex.org/W1978659039","https://openalex.org/W4254206667","https://openalex.org/W2152888459"],"abstract_inverted_index":{"Abstract":[0],"The":[1,20,83],"application":[2],"of":[3,12,22,58,68,72,74,77,85,99],"the":[4,10,47,69,78,86],"fuzzy":[5],"oil":[6],"drop":[7],"model":[8],"to":[9,28,46,65,96],"analysis":[11],"protein":[13],"structure":[14],"is":[15,26,92],"shown":[16],"using":[17],"two":[18,24,62],"proteins.":[19,82],"selection":[21],"these":[23],"examples":[25,67],"due":[27],"their":[29],"opposite":[30],"character.":[31],"Two":[32],"proteins":[33,53,100],"were":[34],"selected":[35],"representing":[36],"very":[37,41],"high":[38,42,59],"order":[39],"and":[40],"disorder":[43],"with":[44,94],"respect":[45,95],"organized":[48],"uni-central":[49],"hydrophobic":[50,79],"core":[51,80],"in":[52,81,89,102],"(one":[54],"centrally":[55],"localized":[56],"concentration":[57],"hydrophobicity).":[60],"These":[61],"cases":[63],"are":[64],"show":[66],"large":[70,97],"spectrum":[71],"variability":[73],"local":[75],"organization":[76],"importance":[84],"observation":[87],"presented":[88],"this":[90],"paper":[91],"significant":[93],"sets":[98],"discussed":[101],"separate":[103],"publications.":[104]},"counts_by_year":[],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
