{"id":"https://openalex.org/W1994520578","doi":"https://doi.org/10.1515/bams-2013-0020","title":"Structural role of exon-coded fragments in proteins","display_name":"Structural role of exon-coded fragments in proteins","publication_year":2013,"publication_date":"2013-09-01","ids":{"openalex":"https://openalex.org/W1994520578","doi":"https://doi.org/10.1515/bams-2013-0020","mag":"1994520578"},"language":"en","primary_location":{"id":"doi:10.1515/bams-2013-0020","is_oa":false,"landing_page_url":"https://doi.org/10.1515/bams-2013-0020","pdf_url":null,"source":{"id":"https://openalex.org/S2764861201","display_name":"Bio-Algorithms and Med-Systems","issn_l":"1895-9091","issn":["1895-9091","1896-530X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310313990","host_organization_name":"De Gruyter","host_organization_lineage":["https://openalex.org/P4310313990"],"host_organization_lineage_names":["De Gruyter"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"bams","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://ruj.uj.edu.pl/xmlui/handle/item/108571","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054698572","display_name":"Monika Piwowar","orcid":"https://orcid.org/0000-0003-4645-8730"},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Monika Piwowar","raw_affiliation_strings":["Department of Bioinformatics and Telemedicine, Medical College, Jagiellonian University, Krak\u00f3w, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Telemedicine, Medical College, Jagiellonian University, Krak\u00f3w, Poland","institution_ids":["https://openalex.org/I126596746"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068559370","display_name":"Mateusz Banach","orcid":"https://orcid.org/0000-0003-1806-9877"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mateusz Banach","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027144155","display_name":"Leszek Konieczny","orcid":null},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Leszek Konieczny","raw_affiliation_strings":["Chair of Medical Biochemistry, Medical College, Jagiellonian University, Krak\u00f3w, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chair of Medical Biochemistry, Medical College, Jagiellonian University, Krak\u00f3w, Poland","institution_ids":["https://openalex.org/I126596746"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087239926","display_name":"Irena Roterman","orcid":"https://orcid.org/0000-0003-3652-9099"},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Irena Roterman","raw_affiliation_strings":["Department of Bioinformatics and Telemedicine, Medical College, Jagiellonian University, Krak\u00f3w, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics and Telemedicine, Medical College, Jagiellonian University, Krak\u00f3w, Poland","institution_ids":["https://openalex.org/I126596746"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5087239926"],"corresponding_institution_ids":["https://openalex.org/I126596746"],"apc_list":null,"apc_paid":null,"fwci":0.2991,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.61130374,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"9","issue":"3","first_page":"103","last_page":"114"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/exon","display_name":"Exon","score":0.9332985877990723},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5949054956436157},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.5298433303833008},{"id":"https://openalex.org/keywords/alternative-splicing","display_name":"Alternative splicing","score":0.48749685287475586},{"id":"https://openalex.org/keywords/splice","display_name":"splice","score":0.4717591404914856},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.38850679993629456},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.35089975595474243},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3308485746383667},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3090548813343048},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.0957975685596466}],"concepts":[{"id":"https://openalex.org/C36823959","wikidata":"https://www.wikidata.org/wiki/Q373027","display_name":"Exon","level":3,"score":0.9332985877990723},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5949054956436157},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.5298433303833008},{"id":"https://openalex.org/C194583182","wikidata":"https://www.wikidata.org/wiki/Q21114084","display_name":"Alternative splicing","level":4,"score":0.48749685287475586},{"id":"https://openalex.org/C2780989783","wikidata":"https://www.wikidata.org/wiki/Q7578557","display_name":"splice","level":3,"score":0.4717591404914856},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.38850679993629456},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.35089975595474243},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3308485746383667},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3090548813343048},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.0957975685596466}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1515/bams-2013-0020","is_oa":false,"landing_page_url":"https://doi.org/10.1515/bams-2013-0020","pdf_url":null,"source":{"id":"https://openalex.org/S2764861201","display_name":"Bio-Algorithms and Med-Systems","issn_l":"1895-9091","issn":["1895-9091","1896-530X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310313990","host_organization_name":"De Gruyter","host_organization_lineage":["https://openalex.org/P4310313990"],"host_organization_lineage_names":["De Gruyter"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"bams","raw_type":"journal-article"},{"id":"pmh:oai:ruj.uj.edu.pl:item/108571","is_oa":true,"landing_page_url":"https://ruj.uj.edu.pl/xmlui/handle/item/108571","pdf_url":null,"source":{"id":"https://openalex.org/S4306400316","display_name":"Homo Politicus (Academy of Humanities and Economics in Lodz)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"artyku\u0142 w czasopi\u015bmie"},{"id":"pmh:oai:ruj.uj.edu.pl:item/118960","is_oa":true,"landing_page_url":"https://ruj.uj.edu.pl/xmlui/handle/item/118960","pdf_url":null,"source":{"id":"https://openalex.org/S4306401249","display_name":"Jagiellonian University Repository (Jagiellonian University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I126596746","host_organization_name":"Jagiellonian University","host_organization_lineage":["https://openalex.org/I126596746"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:ruj.uj.edu.pl:item/131766","is_oa":true,"landing_page_url":"https://ruj.uj.edu.pl/xmlui/handle/item/131766","pdf_url":null,"source":{"id":"https://openalex.org/S4306401249","display_name":"Jagiellonian University Repository (Jagiellonian University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I126596746","host_organization_name":"Jagiellonian University","host_organization_lineage":["https://openalex.org/I126596746"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:ruj.uj.edu.pl:item/94965","is_oa":true,"landing_page_url":"https://ruj.uj.edu.pl/xmlui/handle/item/94965","pdf_url":null,"source":{"id":"https://openalex.org/S4306400316","display_name":"Homo Politicus (Academy of Humanities and Economics in Lodz)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"artyku\u0142 w czasopi\u015bmie"}],"best_oa_location":{"id":"pmh:oai:ruj.uj.edu.pl:item/108571","is_oa":true,"landing_page_url":"https://ruj.uj.edu.pl/xmlui/handle/item/108571","pdf_url":null,"source":{"id":"https://openalex.org/S4306400316","display_name":"Homo Politicus (Academy of Humanities and Economics in Lodz)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"artyku\u0142 w czasopi\u015bmie"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W112624457","https://openalex.org/W113763381","https://openalex.org/W157808733","https://openalex.org/W1964107227","https://openalex.org/W1965555277","https://openalex.org/W1967450389","https://openalex.org/W1971301499","https://openalex.org/W1974727119","https://openalex.org/W1975304761","https://openalex.org/W1975745222","https://openalex.org/W1982166691","https://openalex.org/W1984547849","https://openalex.org/W1985094434","https://openalex.org/W1997870466","https://openalex.org/W2000207110","https://openalex.org/W2001014276","https://openalex.org/W2010228913","https://openalex.org/W2011383566","https://openalex.org/W2011920499","https://openalex.org/W2016785081","https://openalex.org/W2017422947","https://openalex.org/W2023178859","https://openalex.org/W2023400093","https://openalex.org/W2034846063","https://openalex.org/W2042112205","https://openalex.org/W2044223477","https://openalex.org/W2045227999","https://openalex.org/W2052936139","https://openalex.org/W2084232810","https://openalex.org/W2096736704","https://openalex.org/W2109936378","https://openalex.org/W2114441129","https://openalex.org/W2141272708","https://openalex.org/W2156954132","https://openalex.org/W2160286182","https://openalex.org/W2178996695"],"related_works":["https://openalex.org/W2068174058","https://openalex.org/W2130439870","https://openalex.org/W2800537687","https://openalex.org/W178291922","https://openalex.org/W2147652847","https://openalex.org/W2000278701","https://openalex.org/W1976843764","https://openalex.org/W3215633333","https://openalex.org/W2001319824","https://openalex.org/W2151954452"],"abstract_inverted_index":{"Abstract":[0],"This":[1,94],"article":[2],"describes":[3],"the":[4,16,20,23,58,67,76,83,109],"role":[5,86],"of":[6,15,22,61,66,69,87,104],"protein":[7],"fragments":[8,36],"encoded":[9,37,90],"by":[10,38,91],"individual":[11,92],"exons.":[12,93],"Structural":[13],"analysis":[14],"hydrophobic":[17],"core":[18],"on":[19],"basis":[21],"\u201cfuzzy":[24],"oil":[25],"drop\u201d":[26],"model":[27,77],"\u2013":[28,41],"in":[29,35,44,72,81,107],"whole":[30],"molecules":[31],"as":[32,34,97],"well":[33],"specific":[39],"exons":[40,71],"indicates":[42],"that,":[43],"each":[45],"protein,":[46],"at":[47],"least":[48],"one":[49],"exon":[50],"encodes":[51],"a":[52,98],"fragment,":[53],"which":[54],"is":[55,95],"consistent":[56],"with":[57],"theoretical":[59],"distribution":[60],"hydrophobicity":[62],"density.":[63],"Quantitative":[64],"assessment":[65],"properties":[68],"such":[70],"selected":[73],"proteins":[74],"enables":[75],"to":[78],"be":[79],"applied":[80],"identifying":[82],"structural":[84],"(stabilizing)":[85],"polypeptide":[88],"chains":[89],"viewed":[96],"preliminary":[99],"step":[100],"toward":[101],"future":[102],"exploitation":[103],"this":[105],"technique":[106],"studying":[108],"alternative":[110],"splicing":[111],"phenomenon.":[112]},"counts_by_year":[{"year":2013,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
