{"id":"https://openalex.org/W314046337","doi":"https://doi.org/10.1515/bams-2012-0026","title":"Computations of Protein Hydrophobicity Profile as Virtual Experiment in Gridspace Virtual Laboratory","display_name":"Computations of Protein Hydrophobicity Profile as Virtual Experiment in Gridspace Virtual Laboratory","publication_year":2012,"publication_date":"2012-12-01","ids":{"openalex":"https://openalex.org/W314046337","doi":"https://doi.org/10.1515/bams-2012-0026","mag":"314046337"},"language":"en","primary_location":{"id":"doi:10.1515/bams-2012-0026","is_oa":false,"landing_page_url":"https://doi.org/10.1515/bams-2012-0026","pdf_url":null,"source":{"id":"https://openalex.org/S2764861201","display_name":"Bio-Algorithms and Med-Systems","issn_l":"1895-9091","issn":["1895-9091","1896-530X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310313990","host_organization_name":"De Gruyter","host_organization_lineage":["https://openalex.org/P4310313990"],"host_organization_lineage_names":["De Gruyter"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"bams","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057039763","display_name":"Eryk Ciepiela","orcid":null},"institutions":[{"id":"https://openalex.org/I4391012572","display_name":"Akademickie Centrum Komputerowe Cyfronet AGH","ror":"https://ror.org/0575jwx13","country_code":"PL","type":"education","lineage":["https://openalex.org/I4391012572"]},{"id":"https://openalex.org/I686019","display_name":"AGH University of Krakow","ror":"https://ror.org/00bas1c41","country_code":"PL","type":"education","lineage":["https://openalex.org/I686019"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Eryk Ciepiela","raw_affiliation_strings":["Academic Computer Centre CYFRONET AGH, Nawojki 11, 30-950 Krak\u00f3w, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academic Computer Centre CYFRONET AGH, Nawojki 11, 30-950 Krak\u00f3w, Poland","institution_ids":["https://openalex.org/I686019","https://openalex.org/I4391012572"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045987075","display_name":"Tomasz Jadczyk","orcid":"https://orcid.org/0000-0002-7955-9100"},"institutions":[{"id":"https://openalex.org/I4391012572","display_name":"Akademickie Centrum Komputerowe Cyfronet AGH","ror":"https://ror.org/0575jwx13","country_code":"PL","type":"education","lineage":["https://openalex.org/I4391012572"]},{"id":"https://openalex.org/I686019","display_name":"AGH University of Krakow","ror":"https://ror.org/00bas1c41","country_code":"PL","type":"education","lineage":["https://openalex.org/I686019"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Tomasz Jadczyk","raw_affiliation_strings":["Academic Computer Centre CYFRONET AGH, Nawojki 11, 30-950 Krak\u00f3w, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academic Computer Centre CYFRONET AGH, Nawojki 11, 30-950 Krak\u00f3w, Poland","institution_ids":["https://openalex.org/I686019","https://openalex.org/I4391012572"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083882805","display_name":"Daniel Har\u0119\u017clak","orcid":null},"institutions":[{"id":"https://openalex.org/I686019","display_name":"AGH University of Krakow","ror":"https://ror.org/00bas1c41","country_code":"PL","type":"education","lineage":["https://openalex.org/I686019"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Daniel Har\u0119\u017clak","raw_affiliation_strings":["Computer Centre CYFRONET AGH, Nawojki 11, 30-950 Krak\u00f3w, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Centre CYFRONET AGH, Nawojki 11, 30-950 Krak\u00f3w, Poland","institution_ids":["https://openalex.org/I686019"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088995997","display_name":"Marek Kasztelnik","orcid":"https://orcid.org/0000-0002-8473-5236"},"institutions":[{"id":"https://openalex.org/I4391012572","display_name":"Akademickie Centrum Komputerowe Cyfronet AGH","ror":"https://ror.org/0575jwx13","country_code":"PL","type":"education","lineage":["https://openalex.org/I4391012572"]},{"id":"https://openalex.org/I686019","display_name":"AGH University of Krakow","ror":"https://ror.org/00bas1c41","country_code":"PL","type":"education","lineage":["https://openalex.org/I686019"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Marek Kasztelnik","raw_affiliation_strings":["Academic Computer Centre CYFRONET AGH, Nawojki 11, 30-950 Krak\u00f3w, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academic Computer Centre CYFRONET AGH, Nawojki 11, 30-950 Krak\u00f3w, Poland","institution_ids":["https://openalex.org/I686019","https://openalex.org/I4391012572"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103107541","display_name":"Piotr Nowakowski","orcid":"https://orcid.org/0000-0002-2369-3685"},"institutions":[{"id":"https://openalex.org/I4391012572","display_name":"Akademickie Centrum Komputerowe Cyfronet AGH","ror":"https://ror.org/0575jwx13","country_code":"PL","type":"education","lineage":["https://openalex.org/I4391012572"]},{"id":"https://openalex.org/I686019","display_name":"AGH University of Krakow","ror":"https://ror.org/00bas1c41","country_code":"PL","type":"education","lineage":["https://openalex.org/I686019"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Piotr Nowakowski","raw_affiliation_strings":["Academic Computer Centre CYFRONET AGH, Nawojki 11, 30-950 Krak\u00f3w, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academic Computer Centre CYFRONET AGH, Nawojki 11, 30-950 Krak\u00f3w, Poland","institution_ids":["https://openalex.org/I686019","https://openalex.org/I4391012572"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019809110","display_name":"Grzegorz Dyk","orcid":null},"institutions":[{"id":"https://openalex.org/I4391012572","display_name":"Akademickie Centrum Komputerowe Cyfronet AGH","ror":"https://ror.org/0575jwx13","country_code":"PL","type":"education","lineage":["https://openalex.org/I4391012572"]},{"id":"https://openalex.org/I686019","display_name":"AGH University of Krakow","ror":"https://ror.org/00bas1c41","country_code":"PL","type":"education","lineage":["https://openalex.org/I686019"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Grzegorz Dyk","raw_affiliation_strings":["Academic Computer Centre CYFRONET AGH, Nawojki 11, 30-950 Krak\u00f3w, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academic Computer Centre CYFRONET AGH, Nawojki 11, 30-950 Krak\u00f3w, Poland","institution_ids":["https://openalex.org/I686019","https://openalex.org/I4391012572"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107194750","display_name":"M. Malawski","orcid":"https://orcid.org/0000-0001-6005-0243"},"institutions":[{"id":"https://openalex.org/I686019","display_name":"AGH University of Krakow","ror":"https://ror.org/00bas1c41","country_code":"PL","type":"education","lineage":["https://openalex.org/I686019"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Maciej Malawski","raw_affiliation_strings":["AGH University of Science and Technology, Department of Computer Science, al. Mickiewicza 30, 30-059 Krak\u00f3w, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AGH University of Science and Technology, Department of Computer Science, al. Mickiewicza 30, 30-059 Krak\u00f3w, Poland","institution_ids":["https://openalex.org/I686019"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004326594","display_name":"Marian Bubak","orcid":"https://orcid.org/0000-0001-6083-0549"},"institutions":[{"id":"https://openalex.org/I4391012572","display_name":"Akademickie Centrum Komputerowe Cyfronet AGH","ror":"https://ror.org/0575jwx13","country_code":"PL","type":"education","lineage":["https://openalex.org/I4391012572"]},{"id":"https://openalex.org/I686019","display_name":"AGH University of Krakow","ror":"https://ror.org/00bas1c41","country_code":"PL","type":"education","lineage":["https://openalex.org/I686019"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Marian Bubak","raw_affiliation_strings":["Academic Computer Centre CYFRONET AGH, Nawojki 11, 30-950 Krak\u00f3w, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academic Computer Centre CYFRONET AGH, Nawojki 11, 30-950 Krak\u00f3w, Poland","institution_ids":["https://openalex.org/I686019","https://openalex.org/I4391012572"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087239926","display_name":"Irena Roterman","orcid":"https://orcid.org/0000-0003-3652-9099"},"institutions":[{"id":"https://openalex.org/I126596746","display_name":"Jagiellonian University","ror":"https://ror.org/03bqmcz70","country_code":"PL","type":"education","lineage":["https://openalex.org/I126596746"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Irena Roterman","raw_affiliation_strings":["Jagiellonian University, Medical College, Department of Bioinformatics and Telemedicine, Jagiellonian University, \u0141azarza 16, 31-530 Krak\u00f3w, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jagiellonian University, Medical College, Department of Bioinformatics and Telemedicine, Jagiellonian University, \u0141azarza 16, 31-530 Krak\u00f3w, Poland","institution_ids":["https://openalex.org/I126596746"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5057039763"],"corresponding_institution_ids":["https://openalex.org/I4391012572","https://openalex.org/I686019"],"apc_list":null,"apc_paid":null,"fwci":0.3726,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.60609259,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"8","issue":"4","first_page":"361","last_page":"372"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9352999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.5655642151832581},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5483999848365784},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.5461763143539429},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.4859668016433716},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4469505846500397},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4426790773868561},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.35983413457870483},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3577914237976074},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1728469431400299},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.15285593271255493},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14793667197227478},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1319461166858673},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.10949704051017761}],"concepts":[{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.5655642151832581},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5483999848365784},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.5461763143539429},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.4859668016433716},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4469505846500397},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4426790773868561},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.35983413457870483},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3577914237976074},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1728469431400299},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.15285593271255493},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14793667197227478},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1319461166858673},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.10949704051017761},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1515/bams-2012-0026","is_oa":false,"landing_page_url":"https://doi.org/10.1515/bams-2012-0026","pdf_url":null,"source":{"id":"https://openalex.org/S2764861201","display_name":"Bio-Algorithms and Med-Systems","issn_l":"1895-9091","issn":["1895-9091","1896-530X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310313990","host_organization_name":"De Gruyter","host_organization_lineage":["https://openalex.org/P4310313990"],"host_organization_lineage_names":["De Gruyter"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"bams","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6299999952316284,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W216878207","https://openalex.org/W1558326120","https://openalex.org/W2101743409","https://openalex.org/W2112806232","https://openalex.org/W2114441129","https://openalex.org/W2156954132"],"related_works":["https://openalex.org/W2392155297","https://openalex.org/W4309223525","https://openalex.org/W1501473830","https://openalex.org/W1691051400","https://openalex.org/W2736583656","https://openalex.org/W1969582418","https://openalex.org/W104982047","https://openalex.org/W1429949169","https://openalex.org/W2074513997","https://openalex.org/W2387742153"],"abstract_inverted_index":{"ABSTRACT":[0],"The":[1,87,123,146,226,238,254],"terms":[2],"like":[3],"e-science,":[4],"e-poster":[5],"or":[6],"e-health":[7],"are":[8,22],"nowadays":[9],"commonly":[10,23],"used.":[11],"Special":[12],"disciplines":[13],"allowing":[14],"fast":[15],"development":[16],"in":[17,51,84,92,137,140,162,206],"these":[18,229],"fields":[19],"of":[20,54,73,77,142,148,166,190,208,214,228,249,256],"science":[21],"available.":[24],"This":[25,49,105,192],"paper":[26],"presents":[27],"e-paper":[28],"[1]":[29],"powered":[30],"by":[31,42],"the":[32,43,59,71,74,81,99,126,134,149,155,163,167,175,180,195,212,242,246,257],"Collage":[33],"Authoring":[34],"Environment":[35],"[2]":[36],"e-publication":[37,50,239],"system":[38],"which":[39],"is":[40,193,204,260],"backed":[41],"GridSpace2":[44,90],"[3]":[45],"distributed":[46],"computing":[47,103],"platform.":[48],"a":[52],"form":[53,141,189,207],"WWW":[55],"page,":[56],"apart":[57],"from":[58],"traditional":[60],"textual":[61],"and":[62,121,170,200,235],"graphical":[63],"content,":[64],"embeds":[65],"an":[66],"on-line":[67],"software":[68],"tool":[69,88,124,243],"for":[70,262],"analysis":[72],"3-D":[75,143],"structure":[76,152],"protein":[78,85,147,168,181,251],"based":[79],"on":[80,98],"hydrophobicity":[82,135,150,202,218,224],"distribution":[83,136,203,227],"body.":[86],"uses":[89],"platform":[91],"order":[93],"to":[94,232,244],"carry":[95],"out":[96],"computations":[97],"PL-Grid":[100],"[4]":[101],"high-performance":[102],"infrastructure.":[104],"work":[106],"shows":[107],"how":[108],"this":[109],"specific":[110,234,261],"epublication":[111],"was":[112],"accomplished":[113],"utilizing":[114],"above":[115],"mentioned":[116],"already":[117],"existing":[118],"information":[119],"technologies":[120],"e-infrastructure":[122],"employs":[125],"model":[127,156],"called":[128],"\u201cfuzzy":[129],"oil":[130],"drop\u201d":[131],"that":[132],"assumes":[133],"proteins":[138],"being":[139],"Gauss":[144],"function.":[145],"core":[151],"accordant":[153],"with":[154,157],"all":[158],"hydrophobic":[159],"residues":[160,172,215],"buried":[161],"central":[164],"part":[165],"body":[169],"hydrophilic":[171],"exposed":[173],"toward":[174],"water":[176],"environment":[177],"could":[178],"be":[179,233],"very":[182],"well":[183,221],"soluble":[184],"although":[185],"representing":[186,216],"no":[187],"any":[188,250],"activity.":[191],"why":[194],"observed":[196,201],"discrepancies":[197,230],"between":[198],"idealized":[199],"presented":[205],"\u0394H\u0303&lt;sub&gt;i&lt;/sub&gt;":[209,247],"profile":[210,248],"revealing":[211],"localization":[213],"local":[217,223],"excess":[219],"as":[220,222],"deficiency.":[225],"appeared":[231],"function":[236],"related.":[237],"makes":[240],"available":[241],"calculate":[245],"under":[252],"consideration.":[253],"interpretation":[255],"final":[258],"results":[259],"particular":[263],"protein.":[264]},"counts_by_year":[{"year":2014,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
