{"id":"https://openalex.org/W2309296270","doi":"https://doi.org/10.1515/amcs-2016-0017","title":"Modelling DNA and RNA secondary structures using matrix insertion\u2013deletion systems","display_name":"Modelling DNA and RNA secondary structures using matrix insertion\u2013deletion systems","publication_year":2016,"publication_date":"2016-03-01","ids":{"openalex":"https://openalex.org/W2309296270","doi":"https://doi.org/10.1515/amcs-2016-0017","mag":"2309296270"},"language":"en","primary_location":{"id":"doi:10.1515/amcs-2016-0017","is_oa":true,"landing_page_url":"https://doi.org/10.1515/amcs-2016-0017","pdf_url":"https://content.sciendo.com/downloadpdf/journals/amcs/26/1/article-p245.pdf","source":{"id":"https://openalex.org/S117679522","display_name":"International Journal of Applied Mathematics and Computer Science","issn_l":"1641-876X","issn":["1641-876X","2083-8492"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320322","host_organization_name":"De Gruyter Open","host_organization_lineage":["https://openalex.org/P4310320322","https://openalex.org/P4310313990"],"host_organization_lineage_names":["De Gruyter Open","De Gruyter"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Applied Mathematics and Computer Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://content.sciendo.com/downloadpdf/journals/amcs/26/1/article-p245.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044078854","display_name":"Lakshmanan Kuppusamy","orcid":"https://orcid.org/0000-0003-2358-905X"},"institutions":[{"id":"https://openalex.org/I876193797","display_name":"Vellore Institute of Technology University","ror":"https://ror.org/00qzypv28","country_code":"IN","type":"education","lineage":["https://openalex.org/I876193797"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Lakshmanan Kuppusamy","raw_affiliation_strings":["School of Computing Science and Engineering, VIT University, Vellore 632014, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing Science and Engineering, VIT University, Vellore 632014, India","institution_ids":["https://openalex.org/I876193797"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047657976","display_name":"Anand Mahendran","orcid":"https://orcid.org/0000-0002-7629-9606"},"institutions":[{"id":"https://openalex.org/I91450128","display_name":"Jazan University","ror":"https://ror.org/02bjnq803","country_code":"SA","type":"education","lineage":["https://openalex.org/I91450128"]}],"countries":["SA"],"is_corresponding":true,"raw_author_name":"Anand Mahendran","raw_affiliation_strings":["Department of Computer Science, College of Computer Science and Information Systems, Jazan University, Jazan 45142, Kingdom of Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, College of Computer Science and Information Systems, Jazan University, Jazan 45142, Kingdom of Saudi Arabia","institution_ids":["https://openalex.org/I91450128"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5047657976"],"corresponding_institution_ids":["https://openalex.org/I91450128"],"apc_list":{"value":4080,"currency":"PLN","value_usd":1100},"apc_paid":{"value":4080,"currency":"PLN","value_usd":1100},"fwci":1.8795,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.85447283,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"26","issue":"1","first_page":"245","last_page":"258"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/formalism","display_name":"Formalism (music)","score":0.6777306795120239},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.6615922451019287},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.6122539639472961},{"id":"https://openalex.org/keywords/grammar","display_name":"Grammar","score":0.5288774967193604},{"id":"https://openalex.org/keywords/intramolecular-force","display_name":"Intramolecular force","score":0.5023283958435059},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.466239869594574},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4614701271057129},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4393860101699829},{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.4370570182800293},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.39228206872940063},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3789989948272705},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.33804255723953247},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2528446316719055},{"id":"https://openalex.org/keywords/stereochemistry","display_name":"Stereochemistry","score":0.14288631081581116},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.10617277026176453},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.07667553424835205}],"concepts":[{"id":"https://openalex.org/C73301696","wikidata":"https://www.wikidata.org/wiki/Q5469984","display_name":"Formalism (music)","level":3,"score":0.6777306795120239},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.6615922451019287},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.6122539639472961},{"id":"https://openalex.org/C26022165","wikidata":"https://www.wikidata.org/wiki/Q8091","display_name":"Grammar","level":2,"score":0.5288774967193604},{"id":"https://openalex.org/C75079739","wikidata":"https://www.wikidata.org/wiki/Q1571801","display_name":"Intramolecular force","level":2,"score":0.5023283958435059},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.466239869594574},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4614701271057129},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4393860101699829},{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.4370570182800293},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.39228206872940063},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3789989948272705},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.33804255723953247},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2528446316719055},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.14288631081581116},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.10617277026176453},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.07667553424835205},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C558565934","wikidata":"https://www.wikidata.org/wiki/Q2743","display_name":"Musical","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1515/amcs-2016-0017","is_oa":true,"landing_page_url":"https://doi.org/10.1515/amcs-2016-0017","pdf_url":"https://content.sciendo.com/downloadpdf/journals/amcs/26/1/article-p245.pdf","source":{"id":"https://openalex.org/S117679522","display_name":"International Journal of Applied Mathematics and Computer Science","issn_l":"1641-876X","issn":["1641-876X","2083-8492"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320322","host_organization_name":"De Gruyter Open","host_organization_lineage":["https://openalex.org/P4310320322","https://openalex.org/P4310313990"],"host_organization_lineage_names":["De Gruyter Open","De Gruyter"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Applied Mathematics and Computer Science","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:ada02e3277bd44949f6c4ffc457d42ed","is_oa":false,"landing_page_url":"https://doaj.org/article/ada02e3277bd44949f6c4ffc457d42ed","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"International Journal of Applied Mathematics and Computer Science, Vol 26, Iss 1, Pp 245-258 (2016)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1515/amcs-2016-0017","is_oa":true,"landing_page_url":"https://doi.org/10.1515/amcs-2016-0017","pdf_url":"https://content.sciendo.com/downloadpdf/journals/amcs/26/1/article-p245.pdf","source":{"id":"https://openalex.org/S117679522","display_name":"International Journal of Applied Mathematics and Computer Science","issn_l":"1641-876X","issn":["1641-876X","2083-8492"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320322","host_organization_name":"De Gruyter Open","host_organization_lineage":["https://openalex.org/P4310320322","https://openalex.org/P4310313990"],"host_organization_lineage_names":["De Gruyter Open","De Gruyter"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Applied Mathematics and Computer Science","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.800000011920929}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322838","display_name":"VIT University","ror":"https://ror.org/00qzypv28"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2309296270.pdf","grobid_xml":"https://content.openalex.org/works/W2309296270.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W36639476","https://openalex.org/W67377139","https://openalex.org/W1496687288","https://openalex.org/W1573676079","https://openalex.org/W1579216431","https://openalex.org/W1581073379","https://openalex.org/W1614696623","https://openalex.org/W1917700990","https://openalex.org/W1971988254","https://openalex.org/W1991864975","https://openalex.org/W2023206235","https://openalex.org/W2028574527","https://openalex.org/W2039775516","https://openalex.org/W2058302256","https://openalex.org/W2079969024","https://openalex.org/W2081947573","https://openalex.org/W2086509077","https://openalex.org/W2093205346","https://openalex.org/W2113997157","https://openalex.org/W2137480976","https://openalex.org/W2156244955","https://openalex.org/W2166480651","https://openalex.org/W2169105524","https://openalex.org/W2170748882","https://openalex.org/W2243176591","https://openalex.org/W2398951942","https://openalex.org/W2525509737","https://openalex.org/W2904250082","https://openalex.org/W2914627413","https://openalex.org/W3023540311","https://openalex.org/W3214380909","https://openalex.org/W4210461990","https://openalex.org/W4241604193","https://openalex.org/W4245668478","https://openalex.org/W4248165980","https://openalex.org/W4253729258","https://openalex.org/W4299796063"],"related_works":["https://openalex.org/W2060958215","https://openalex.org/W2417242754","https://openalex.org/W2276634778","https://openalex.org/W81960683","https://openalex.org/W1977413761","https://openalex.org/W2076804805","https://openalex.org/W2600828970","https://openalex.org/W1965617589","https://openalex.org/W854147109","https://openalex.org/W2036412199"],"abstract_inverted_index":{"Abstract":[0],"Insertion":[1],"and":[2,12,30,87,101],"deletion":[3],"are":[4],"operations":[5],"that":[6,39,43,64,95],"occur":[7,44,96],"commonly":[8],"in":[9,73],"DNA":[10],"processing":[11],"RNA":[13,102],"editing.":[14],"Since":[15],"biological":[16],"macromolecules":[17],"can":[18,25,32,48],"be":[19,26,33,49],"viewed":[20],"as":[21,28,35],"symbols,":[22],"gene":[23],"sequences":[24],"represented":[27],"strings":[29],"structures":[31,42,94],"interpreted":[34],"languages.":[36,54],"This":[37],"suggests":[38],"the":[40,56,83,98],"bio-molecular":[41,67,93],"at":[45,97],"different":[46],"levels":[47],"theoretically":[50],"studied":[51],"by":[52],"formal":[53],"In":[55],"literature,":[57],"there":[58],"is":[59],"no":[60],"unique":[61],"grammar":[62,80],"formalism":[63],"captures":[65],"various":[66],"structures.":[68],"To":[69],"overcome":[70],"this":[71,74],"deficiency,":[72],"paper,":[75],"we":[76,90],"introduce":[77],"a":[78],"simple":[79],"model":[81,91],"called":[82],"matrix":[84],"insertion\u2013deletion":[85],"system,":[86],"using":[88],"it":[89],"several":[92],"intramolecular,":[99],"intermolecular":[100],"secondary":[103],"levels.":[104]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":8}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2016-06-24T00:00:00"}
