{"id":"https://openalex.org/W2953650251","doi":"https://doi.org/10.1504/ijdmb.2019.10022332","title":"Hyperlink induced topic search-based method to predict essential proteins","display_name":"Hyperlink induced topic search-based method to predict essential proteins","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2953650251","doi":"https://doi.org/10.1504/ijdmb.2019.10022332","mag":"2953650251"},"language":"en","primary_location":{"id":"doi:10.1504/ijdmb.2019.10022332","is_oa":false,"landing_page_url":"https://doi.org/10.1504/ijdmb.2019.10022332","pdf_url":null,"source":{"id":"https://openalex.org/S35771696","display_name":"International Journal of Data Mining and Bioinformatics","issn_l":"1748-5673","issn":["1748-5673","1748-5681"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310317825","host_organization_name":"Inderscience Publishers","host_organization_lineage":["https://openalex.org/P4310317825"],"host_organization_lineage_names":["Inderscience Publishers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Data Mining and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100419458","display_name":"Zhihong Zhang","orcid":"https://orcid.org/0000-0002-0542-0640"},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhihong Zhang","raw_affiliation_strings":["School of Computer Engineering and Applied Mathematics, Changsha University, Changsha 410022, Hunan Sheng, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Engineering and Applied Mathematics, Changsha University, Changsha 410022, Hunan Sheng, China","institution_ids":["https://openalex.org/I198357462"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054410805","display_name":"Bihai Zhao","orcid":"https://orcid.org/0000-0003-0870-7468"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]},{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bihai Zhao","raw_affiliation_strings":["School of Computer Engineering and Applied Mathematics, Changsha University, Changsha 410022, Hunan Sheng, China; Hunan Provincial Key Laboratory of Nutrition and Quality Control of Aquatic Animals, School of Biological and Environmental Engineering, Changsha University, Changsha 410022, Hunan Sheng, China","Hunan Provincial Key Laboratory of Nutrition and Quality Control of Aquatic Animals, School of Biological and Environmental Engineering, Changsha University, Changsha 410022, Hunan Sheng, China","School of Computer Engineering and Applied Mathematics, Changsha University, Changsha 410022, Hunan Sheng, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Engineering and Applied Mathematics, Changsha University, Changsha 410022, Hunan Sheng, China; Hunan Provincial Key Laboratory of Nutrition and Quality Control of Aquatic Animals, School of Biological and Environmental Engineering, Changsha University, Changsha 410022, Hunan Sheng, China","institution_ids":["https://openalex.org/I16609230","https://openalex.org/I198357462"]},{"raw_affiliation_string":"Hunan Provincial Key Laboratory of Nutrition and Quality Control of Aquatic Animals, School of Biological and Environmental Engineering, Changsha University, Changsha 410022, Hunan Sheng, China","institution_ids":["https://openalex.org/I198357462"]},{"raw_affiliation_string":"School of Computer Engineering and Applied Mathematics, Changsha University, Changsha 410022, Hunan Sheng, China","institution_ids":["https://openalex.org/I198357462"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101056802","display_name":"XU Chang-mei","orcid":null},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Changmei Xu","raw_affiliation_strings":["School of Computer Engineering and Applied Mathematics, Changsha University, Changsha 410022, Hunan Sheng, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Engineering and Applied Mathematics, Changsha University, Changsha 410022, Hunan Sheng, China","institution_ids":["https://openalex.org/I198357462"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078015522","display_name":"Xiwei Tang","orcid":"https://orcid.org/0000-0002-7719-3213"},"institutions":[{"id":"https://openalex.org/I916048824","display_name":"Hunan First Normal University","ror":"https://ror.org/00s9d1a36","country_code":"CN","type":"education","lineage":["https://openalex.org/I916048824"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiwei Tang","raw_affiliation_strings":["School of Information Science and Engineering, Hunan First Normal University, Changsha 410205, Hunan Sheng, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Hunan First Normal University, Changsha 410205, Hunan Sheng, China","institution_ids":["https://openalex.org/I916048824"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075079013","display_name":"Sai Hu","orcid":"https://orcid.org/0000-0001-8911-3797"},"institutions":[{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Sai Hu","raw_affiliation_strings":["School of Computer Engineering and Applied Mathematics, Changsha University, Changsha 410022, Hunan Sheng, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Engineering and Applied Mathematics, Changsha University, Changsha 410022, Hunan Sheng, China","institution_ids":["https://openalex.org/I198357462"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0758,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.42001481,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":93},"biblio":{"volume":"22","issue":"3","first_page":"250","last_page":"250"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7028663158416748},{"id":"https://openalex.org/keywords/false-positive-paradox","display_name":"False positive paradox","score":0.6098411679267883},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.5529718399047852},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5295801162719727},{"id":"https://openalex.org/keywords/hyperlink","display_name":"Hyperlink","score":0.43518173694610596},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.40320032835006714}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7028663158416748},{"id":"https://openalex.org/C64869954","wikidata":"https://www.wikidata.org/wiki/Q1859747","display_name":"False positive paradox","level":2,"score":0.6098411679267883},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.5529718399047852},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5295801162719727},{"id":"https://openalex.org/C30088001","wikidata":"https://www.wikidata.org/wiki/Q102014","display_name":"Hyperlink","level":3,"score":0.43518173694610596},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.40320032835006714},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0},{"id":"https://openalex.org/C21959979","wikidata":"https://www.wikidata.org/wiki/Q36774","display_name":"Web page","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1504/ijdmb.2019.10022332","is_oa":false,"landing_page_url":"https://doi.org/10.1504/ijdmb.2019.10022332","pdf_url":null,"source":{"id":"https://openalex.org/S35771696","display_name":"International Journal of Data Mining and Bioinformatics","issn_l":"1748-5673","issn":["1748-5673","1748-5681"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310317825","host_organization_name":"Inderscience Publishers","host_organization_lineage":["https://openalex.org/P4310317825"],"host_organization_lineage_names":["Inderscience Publishers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Data Mining and Bioinformatics","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.5,"id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2384033143","https://openalex.org/W2366569016","https://openalex.org/W2169968158","https://openalex.org/W1999760390","https://openalex.org/W2215032786","https://openalex.org/W2086877241","https://openalex.org/W1989883077","https://openalex.org/W2086028161","https://openalex.org/W1974853862","https://openalex.org/W1560778146"],"abstract_inverted_index":{"Predicting":[0],"essential":[1,30,60,88,160,192],"proteins":[2,31,61,89,151,156,161,193],"helps":[3],"us":[4],"to":[5,28,43,74,143,163],"understand":[6],"the":[7,44,57,76,80,104,119,140,185],"minimum":[8],"requirements":[9],"for":[10],"cell":[11],"survival":[12],"and":[13,40,49,52,66,122,147,174],"development.":[14],"Benefiting":[15],"from":[16,32,170],"large-scale":[17],"Protein-Protein":[18],"interaction":[19],"(PPI)":[20],"data,":[21],"many":[22],"computation-based":[23],"methods":[24],"have":[25],"been":[26],"designed":[27],"identify":[29],"PPI":[33,36,64,120],"networks.":[34],"Unfortunately,":[35],"data":[37],"is":[38,71,92,115,137],"incomplete":[39],"faulty":[41],"due":[42],"limitations":[45],"of":[46,59,79,107,150],"experimental":[47,181],"conditions":[48],"techniques.":[50],"More":[51],"more":[53],"researchers":[54],"focus":[55],"on":[56,95,110,135,139],"prediction":[58,77,90,194],"by":[62,117],"integrating":[63,118],"networks":[65],"multiple":[67],"biological":[68],"data.":[69],"It":[70],"still":[72],"challenging":[73],"improve":[75],"accuracy":[78],"computational":[81],"methods.":[82,195],"In":[83],"this":[84],"work,":[85],"a":[86,112],"novel":[87],"method":[91,187],"proposed":[93,186],"based":[94,134],"Hyperlink":[96],"Induced":[97],"Topic":[98],"Search":[99],"(HITS)":[100],"algorithm.":[101],"To":[102],"reduce":[103],"negative":[105],"impact":[106],"false":[108],"positives":[109],"prediction,":[111],"weighted":[113,141],"network":[114,121,142],"constructed":[116],"gene":[123],"expression":[124],"profile,":[125],"firstly.":[126],"And":[127],"then,":[128],"an":[129],"improved":[130],"random":[131],"walk":[132],"algorithm":[133],"HITS":[136],"employed":[138],"calculate":[144],"authority":[145,172],"scores":[146,149,173,176],"hub":[148,175],"iteratively.":[152],"Finally,":[153],"top":[154],"K":[155],"are":[157,168],"selected":[158],"as":[159],"according":[162],"their":[164,171],"ranking":[165],"scores,":[166],"which":[167],"derived":[169],"in":[177],"steady":[178],"state.":[179],"The":[180],"results":[182],"show":[183],"that":[184],"obviously":[188],"outperforms":[189],"other":[190],"competing":[191]},"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
