{"id":"https://openalex.org/W2761483964","doi":"https://doi.org/10.1504/ijdmb.2017.10008274","title":"SSDPrimer: an SSD-based primer design method for a private sequence DB","display_name":"SSDPrimer: an SSD-based primer design method for a private sequence DB","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2761483964","doi":"https://doi.org/10.1504/ijdmb.2017.10008274","mag":"2761483964"},"language":"en","primary_location":{"id":"doi:10.1504/ijdmb.2017.10008274","is_oa":false,"landing_page_url":"https://doi.org/10.1504/ijdmb.2017.10008274","pdf_url":null,"source":{"id":"https://openalex.org/S35771696","display_name":"International Journal of Data Mining and Bioinformatics","issn_l":"1748-5673","issn":["1748-5673","1748-5681"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310317825","host_organization_name":"Inderscience Publishers","host_organization_lineage":["https://openalex.org/P4310317825"],"host_organization_lineage_names":["Inderscience Publishers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Data Mining and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5104068378","display_name":"Kang Wook Chon","orcid":null},"institutions":[{"id":"https://openalex.org/I193352282","display_name":"Daegu Gyeongbuk Institute of Science and Technology","ror":"https://ror.org/03frjya69","country_code":"KR","type":"education","lineage":["https://openalex.org/I193352282"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Kang Wook Chon","raw_affiliation_strings":["Department of Information and Communication Engineering, DGIST, Daegu, South Korea"],"affiliations":[{"raw_affiliation_string":"Department of Information and Communication Engineering, DGIST, Daegu, South Korea","institution_ids":["https://openalex.org/I193352282"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048833234","display_name":"Sang Hyun Hwang","orcid":"https://orcid.org/0000-0002-8130-6671"},"institutions":[{"id":"https://openalex.org/I193352282","display_name":"Daegu Gyeongbuk Institute of Science and Technology","ror":"https://ror.org/03frjya69","country_code":"KR","type":"education","lineage":["https://openalex.org/I193352282"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sang Hyun Hwang","raw_affiliation_strings":["Department of Information and Communication Engineering, DGIST, Daegu, South Korea"],"affiliations":[{"raw_affiliation_string":"Department of Information and Communication Engineering, DGIST, Daegu, South Korea","institution_ids":["https://openalex.org/I193352282"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109380882","display_name":"Min Soo Kim","orcid":null},"institutions":[{"id":"https://openalex.org/I193352282","display_name":"Daegu Gyeongbuk Institute of Science and Technology","ror":"https://ror.org/03frjya69","country_code":"KR","type":"education","lineage":["https://openalex.org/I193352282"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Min Soo Kim","raw_affiliation_strings":["Department of Information and Communication Engineering, DGIST, Daegu, South Korea"],"affiliations":[{"raw_affiliation_string":"Department of Information and Communication Engineering, DGIST, Daegu, South Korea","institution_ids":["https://openalex.org/I193352282"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045151473","display_name":"Kyuhyeon An","orcid":null},"institutions":[{"id":"https://openalex.org/I193352282","display_name":"Daegu Gyeongbuk Institute of Science and Technology","ror":"https://ror.org/03frjya69","country_code":"KR","type":"education","lineage":["https://openalex.org/I193352282"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Kyuhyeon An","raw_affiliation_strings":["Department of Information and Communication Engineering, DGIST, Daegu, South Korea"],"affiliations":[{"raw_affiliation_string":"Department of Information and Communication Engineering, DGIST, Daegu, South Korea","institution_ids":["https://openalex.org/I193352282"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5104068378"],"corresponding_institution_ids":["https://openalex.org/I193352282"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.11130434,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"18","issue":"3","first_page":"252","last_page":"252"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9700999855995178,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9660999774932861,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/primer","display_name":"Primer (cosmetics)","score":0.7246988415718079},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7188783288002014},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5564054846763611},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4728199243545532},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18146437406539917},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11420661211013794}],"concepts":[{"id":"https://openalex.org/C2777563447","wikidata":"https://www.wikidata.org/wiki/Q7243397","display_name":"Primer (cosmetics)","level":2,"score":0.7246988415718079},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7188783288002014},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5564054846763611},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4728199243545532},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18146437406539917},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11420661211013794},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1504/ijdmb.2017.10008274","is_oa":false,"landing_page_url":"https://doi.org/10.1504/ijdmb.2017.10008274","pdf_url":null,"source":{"id":"https://openalex.org/S35771696","display_name":"International Journal of Data Mining and Bioinformatics","issn_l":"1748-5673","issn":["1748-5673","1748-5681"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310317825","host_organization_name":"Inderscience Publishers","host_organization_lineage":["https://openalex.org/P4310317825"],"host_organization_lineage_names":["Inderscience Publishers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Data Mining and Bioinformatics","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.41999998688697815}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2375570161","https://openalex.org/W2371958667","https://openalex.org/W2390279801","https://openalex.org/W2333833013","https://openalex.org/W2358668433","https://openalex.org/W2360079597","https://openalex.org/W2376932109","https://openalex.org/W4223953284"],"abstract_inverted_index":{"Many":[0],"tools":[1,23,32,47],"and":[2,24,42,92],"websites":[3,25],"have":[4,48,59],"been":[5,49],"proposed":[6,50],"to":[7,10,33,51,75,108,144],"help":[8],"users":[9,74,143,161],"design":[11,52,76,118,145,164],"primers":[12,53,78,94,146,166],"for":[13,40,167],"quantitative":[14],"Polymerase":[15],"Chain":[16],"Reaction":[17],"(qPCR)":[18],"experiments.":[19],"Most":[20],"of":[21,69,87],"these":[22],"require":[26],"the":[27,55,110,134,155],"external":[28,56],"step":[29],"using":[30],"BLAST-like":[31],"perform":[34],"homology":[35],"tests":[36],"on":[37,66,79,95,124,147],"off-target":[38],"sequences":[39,169],"feasible":[41],"valid":[43],"primers.":[44],"Although":[45],"MRPrimer":[46,135],"without":[54],"step,":[57],"they":[58,62],"drawbacks":[60],"that":[61,122,160],"should":[63],"be":[64],"performed":[65],"a":[67,85,115,125,130],"cluster":[68,86],"machine,":[70,127],"or":[71],"only":[72],"allow":[73],"their":[77,96],"specific":[80],"sequence":[81,99,149],"DB.":[82],"However,":[83],"utilising":[84],"machine":[88],"is":[89,101],"usually":[90],"expensive,":[91],"designing":[93],"own":[97],"private":[98,148],"DB":[100],"indispensable":[102],"in":[103],"many":[104],"cases.":[105],"In":[106,151],"order":[107],"solve":[109],"above":[111],"problems,":[112],"we":[113],"propose":[114],"new":[116],"primer":[117],"method":[119,136],"called":[120],"SSDPrimer":[121,153],"runs":[123],"single":[126],"but":[128],"achieves":[129],"comparable":[131],"speed":[132],"with":[133],"by":[137,170],"exploiting":[138],"SSD":[139],"storage.":[140],"It":[141],"allows":[142],"DBs.":[150],"addition,":[152],"supports":[154],"web":[156],"browser":[157],"interface":[158],"such":[159],"can":[162],"easily":[163],"high-quality":[165],"target":[168],"querying.":[171]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
