{"id":"https://openalex.org/W2616682803","doi":"https://doi.org/10.1504/ijdmb.2017.10005210","title":"Implementing computational biology pipelines using VisFlow","display_name":"Implementing computational biology pipelines using VisFlow","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2616682803","doi":"https://doi.org/10.1504/ijdmb.2017.10005210","mag":"2616682803"},"language":"en","primary_location":{"id":"doi:10.1504/ijdmb.2017.10005210","is_oa":false,"landing_page_url":"https://doi.org/10.1504/ijdmb.2017.10005210","pdf_url":null,"source":{"id":"https://openalex.org/S35771696","display_name":"International Journal of Data Mining and Bioinformatics","issn_l":"1748-5673","issn":["1748-5673","1748-5681"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310317825","host_organization_name":"Inderscience Publishers","host_organization_lineage":["https://openalex.org/P4310317825"],"host_organization_lineage_names":["Inderscience Publishers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Data Mining and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078547980","display_name":"Robert Rinker","orcid":null},"institutions":[{"id":"https://openalex.org/I155093810","display_name":"University of Idaho","ror":"https://ror.org/03hbp5t65","country_code":"US","type":"education","lineage":["https://openalex.org/I155093810"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Robert Rinker","raw_affiliation_strings":["Department of Computer Science, University of Idaho, Moscow, ID 83844, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Idaho, Moscow, ID 83844, USA","institution_ids":["https://openalex.org/I155093810"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048789679","display_name":"Xin Mou","orcid":null},"institutions":[{"id":"https://openalex.org/I155093810","display_name":"University of Idaho","ror":"https://ror.org/03hbp5t65","country_code":"US","type":"education","lineage":["https://openalex.org/I155093810"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xin Mou","raw_affiliation_strings":["Department of Computer Science, University of Idaho, Moscow, ID 83844, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Idaho, Moscow, ID 83844, USA","institution_ids":["https://openalex.org/I155093810"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030091324","display_name":"Hasan M. Jamil","orcid":"https://orcid.org/0000-0002-3124-3780"},"institutions":[{"id":"https://openalex.org/I155093810","display_name":"University of Idaho","ror":"https://ror.org/03hbp5t65","country_code":"US","type":"education","lineage":["https://openalex.org/I155093810"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hasan M. Jamil","raw_affiliation_strings":["Department of Computer Science, University of Idaho, Moscow, ID 83844, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Idaho, Moscow, ID 83844, USA","institution_ids":["https://openalex.org/I155093810"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5078547980"],"corresponding_institution_ids":["https://openalex.org/I155093810"],"apc_list":null,"apc_paid":null,"fwci":0.6324,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.79920351,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"17","issue":"2","first_page":"115","last_page":"115"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9868999719619751,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10317","display_name":"Advanced Database Systems and Queries","score":0.9818000197410583,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8098816871643066},{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.669569730758667},{"id":"https://openalex.org/keywords/xquery","display_name":"XQuery","score":0.5510915517807007},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.5231051445007324},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4916890263557434},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4626300036907196},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.4581519663333893},{"id":"https://openalex.org/keywords/software-portability","display_name":"Software portability","score":0.44616666436195374},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.4413280487060547},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.4407612085342407},{"id":"https://openalex.org/keywords/sql","display_name":"SQL","score":0.41947031021118164},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.4111577272415161},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4067549705505371},{"id":"https://openalex.org/keywords/xml-database","display_name":"XML database","score":0.17440780997276306}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8098816871643066},{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.669569730758667},{"id":"https://openalex.org/C2780512708","wikidata":"https://www.wikidata.org/wiki/Q850661","display_name":"XQuery","level":4,"score":0.5510915517807007},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.5231051445007324},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4916890263557434},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4626300036907196},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.4581519663333893},{"id":"https://openalex.org/C63000827","wikidata":"https://www.wikidata.org/wiki/Q3080428","display_name":"Software portability","level":2,"score":0.44616666436195374},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.4413280487060547},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.4407612085342407},{"id":"https://openalex.org/C510870499","wikidata":"https://www.wikidata.org/wiki/Q47607","display_name":"SQL","level":2,"score":0.41947031021118164},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.4111577272415161},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4067549705505371},{"id":"https://openalex.org/C183068750","wikidata":"https://www.wikidata.org/wiki/Q357393","display_name":"XML database","level":3,"score":0.17440780997276306},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1504/ijdmb.2017.10005210","is_oa":false,"landing_page_url":"https://doi.org/10.1504/ijdmb.2017.10005210","pdf_url":null,"source":{"id":"https://openalex.org/S35771696","display_name":"International Journal of Data Mining and Bioinformatics","issn_l":"1748-5673","issn":["1748-5673","1748-5681"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310317825","host_organization_name":"Inderscience Publishers","host_organization_lineage":["https://openalex.org/P4310317825"],"host_organization_lineage_names":["Inderscience Publishers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Data Mining and Bioinformatics","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.46000000834465027,"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W188394097","https://openalex.org/W265464850","https://openalex.org/W1540874816","https://openalex.org/W1814568923","https://openalex.org/W1976258225","https://openalex.org/W1977736899","https://openalex.org/W1980446256","https://openalex.org/W1992930793","https://openalex.org/W2021694190","https://openalex.org/W2038733937","https://openalex.org/W2064873232","https://openalex.org/W2070588509","https://openalex.org/W2102239864","https://openalex.org/W2102784281","https://openalex.org/W2120590796","https://openalex.org/W2122805915","https://openalex.org/W2127216321","https://openalex.org/W2136714878","https://openalex.org/W2162832420","https://openalex.org/W2267520918","https://openalex.org/W2311936162","https://openalex.org/W2313707335","https://openalex.org/W2344993410","https://openalex.org/W2398079532","https://openalex.org/W2402379413","https://openalex.org/W2404685513","https://openalex.org/W2616760673","https://openalex.org/W2950497661"],"related_works":["https://openalex.org/W1903863661","https://openalex.org/W2393618892","https://openalex.org/W1990201719","https://openalex.org/W110460888","https://openalex.org/W2254547980","https://openalex.org/W1584537303","https://openalex.org/W2788136784","https://openalex.org/W1491583426","https://openalex.org/W1540665740","https://openalex.org/W2048507547"],"abstract_inverted_index":{"Data":[0],"integration":[1,151],"continues":[2],"to":[3,52,108],"baffle":[4],"researchers":[5],"even":[6],"though":[7,69],"substantial":[8],"progress":[9],"has":[10],"been":[11],"made.":[12],"Although":[13],"the":[14],"emergence":[15],"of":[16,97,147],"technologies":[17],"such":[18],"as":[19],"XML,":[20],"web":[21,24],"services,":[22],"semantic":[23],"and":[25,40,65,100,111,135],"cloud":[26],"computing":[27,48],"have":[28],"helped,":[29],"a":[30,47,58,66,88,95,118,127,136,145],"system":[31,68],"in":[32,105,144],"which":[33],"biologists":[34],"are":[35],"comfortable":[36],"articulating":[37],"new":[38],"applications":[39],"developing":[41],"them":[42],"without":[43,114],"technical":[44],"assistance":[45],"from":[46,117],"expert":[49],"is":[50,73],"yet":[51,71],"be":[53],"realised.":[54],"The":[55,81],"distance":[56],"between":[57],"friendly":[59],"graphical":[60],"interface":[61],"that":[62,83],"does":[63],"little,":[64],"'traditional'":[67],"clunky":[70],"powerful,":[72],"deemed":[74],"too":[75],"great":[76],"more":[77],"often":[78],"than":[79],"not.":[80],"question":[82],"remains":[84],"unanswered":[85],"is,":[86],"if":[87],"user":[89],"can":[90],"state":[91],"her":[92],"query":[93],"involving":[94],"set":[96],"complex,":[98],"heterogeneous":[99],"distributed":[101],"life":[102],"sciences":[103],"resources":[104],"an":[106],"easy":[107],"use":[109],"language":[110],"execute":[112],"it":[113],"further":[115],"help":[116],"computer":[119],"savvy":[120],"programmer.":[121],"In":[122],"this":[123],"paper,":[124],"we":[125],"present":[126],"declarative":[128],"meta-language,":[129],"called":[130],"VisFlow,":[131],"for":[132,138],"requirement":[133],"specification,":[134],"translator":[137],"mapping":[139],"requirements":[140],"into":[141],"executable":[142],"queries":[143],"variant":[146],"SQL":[148],"augmented":[149],"with":[150],"artefacts.":[152]},"counts_by_year":[{"year":2017,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
