{"id":"https://openalex.org/W2143745416","doi":"https://doi.org/10.1504/ijdmb.2013.054700","title":"A supervised approach to detect protein complex by combining biological and topological properties","display_name":"A supervised approach to detect protein complex by combining biological and topological properties","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2143745416","doi":"https://doi.org/10.1504/ijdmb.2013.054700","mag":"2143745416","pmid":"https://pubmed.ncbi.nlm.nih.gov/23865168"},"language":"en","primary_location":{"id":"doi:10.1504/ijdmb.2013.054700","is_oa":false,"landing_page_url":"https://doi.org/10.1504/ijdmb.2013.054700","pdf_url":null,"source":{"id":"https://openalex.org/S35771696","display_name":"International Journal of Data Mining and Bioinformatics","issn_l":"1748-5673","issn":["1748-5673","1748-5681"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310317825","host_organization_name":"Inderscience Publishers","host_organization_lineage":["https://openalex.org/P4310317825"],"host_organization_lineage_names":["Inderscience Publishers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Data Mining and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068021161","display_name":"Yang Yu","orcid":"https://orcid.org/0000-0003-4669-934X"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]},{"id":"https://openalex.org/I158809036","display_name":"Shenzhen Institute of Information Technology","ror":"https://ror.org/03wrf9427","country_code":"CN","type":"education","lineage":["https://openalex.org/I158809036"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yang Yu","raw_affiliation_strings":["Department of Computer Science and Technology, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen 518055, China. yuyang@insun.hit.edu.cn","Department of Computer Science and Technology, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen 518055, China#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen 518055, China. yuyang@insun.hit.edu.cn","institution_ids":["https://openalex.org/I158809036","https://openalex.org/I204983213"]},{"raw_affiliation_string":"Department of Computer Science and Technology, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen 518055, China#TAB#","institution_ids":["https://openalex.org/I158809036","https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100424254","display_name":"Xiaolong Wang","orcid":"https://orcid.org/0000-0001-9003-4252"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]},{"id":"https://openalex.org/I158809036","display_name":"Shenzhen Institute of Information Technology","ror":"https://ror.org/03wrf9427","country_code":"CN","type":"education","lineage":["https://openalex.org/I158809036"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaolong Wang","raw_affiliation_strings":["Department of Computer Science and Technology, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, 518055 China","School of Computer Science and Technology, Harbin Institute of Technology, Harbin, 150001 China Department of Computer Science and Technology, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, 518055 China","School of Computer Science and Technology, Harbin Institute of Technology, Harbin, 150001 China; Department of Computer Science and Technology, Harbin Institute of Technology Shenzhen Graduate Sch ...#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, 518055 China","institution_ids":["https://openalex.org/I158809036","https://openalex.org/I204983213"]},{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Harbin, 150001 China Department of Computer Science and Technology, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, 518055 China","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Harbin, 150001 China; Department of Computer Science and Technology, Harbin Institute of Technology Shenzhen Graduate Sch ...#TAB#","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048326379","display_name":"Lei Lin","orcid":"https://orcid.org/0000-0002-1161-8565"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Lin","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology, Harbin, 150001 China","School of Computer Science and Technology,Harbin Institute of Technology,Harbin 150001,China, )"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Harbin, 150001 China","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"School of Computer Science and Technology,Harbin Institute of Technology,Harbin 150001,China, )","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033705258","display_name":"Chengjie Sun","orcid":"https://orcid.org/0000-0001-9081-1410"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chengjie Sun","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology, Harbin, 150001 China","School of Computer Science and Technology,Harbin Institute of Technology,Harbin 150001,China, )"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Harbin, 150001 China","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"School of Computer Science and Technology,Harbin Institute of Technology,Harbin 150001,China, )","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100328995","display_name":"Xuan Wang","orcid":"https://orcid.org/0000-0002-3512-0649"},"institutions":[{"id":"https://openalex.org/I158809036","display_name":"Shenzhen Institute of Information Technology","ror":"https://ror.org/03wrf9427","country_code":"CN","type":"education","lineage":["https://openalex.org/I158809036"]},{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuan Wang","raw_affiliation_strings":["Department of Computer Science and Technology, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, 518055 China","School of Computer Science and Technology, Harbin Institute of Technology, Harbin, 150001 China Department of Computer Science and Technology, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, 518055 China","Department of Computer Science and Technology, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen 518055, China#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Technology, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, 518055 China","institution_ids":["https://openalex.org/I158809036","https://openalex.org/I204983213"]},{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Harbin, 150001 China Department of Computer Science and Technology, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, 518055 China","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"Department of Computer Science and Technology, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen 518055, China#TAB#","institution_ids":["https://openalex.org/I158809036","https://openalex.org/I204983213"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5068021161"],"corresponding_institution_ids":["https://openalex.org/I158809036","https://openalex.org/I204983213"],"apc_list":null,"apc_paid":null,"fwci":0.2924,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.62258928,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"8","issue":"1","first_page":"105","last_page":"105"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.5749544501304626},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5404077768325806},{"id":"https://openalex.org/keywords/block","display_name":"Block (permutation group theory)","score":0.49804067611694336},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.45231881737709045},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.4505057632923126},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.4287177622318268},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.40136146545410156},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.38638919591903687},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.374392569065094},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.32716867327690125},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2880120277404785},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.23830634355545044},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.22786998748779297}],"concepts":[{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.5749544501304626},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5404077768325806},{"id":"https://openalex.org/C2777210771","wikidata":"https://www.wikidata.org/wiki/Q4927124","display_name":"Block (permutation group theory)","level":2,"score":0.49804067611694336},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.45231881737709045},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.4505057632923126},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.4287177622318268},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.40136146545410156},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.38638919591903687},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.374392569065094},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.32716867327690125},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2880120277404785},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.23830634355545044},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.22786998748779297},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1504/ijdmb.2013.054700","is_oa":false,"landing_page_url":"https://doi.org/10.1504/ijdmb.2013.054700","pdf_url":null,"source":{"id":"https://openalex.org/S35771696","display_name":"International Journal of Data Mining and Bioinformatics","issn_l":"1748-5673","issn":["1748-5673","1748-5681"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310317825","host_organization_name":"Inderscience Publishers","host_organization_lineage":["https://openalex.org/P4310317825"],"host_organization_lineage_names":["Inderscience Publishers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Data Mining and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23865168","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23865168","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International journal of data mining and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W44922009","https://openalex.org/W1485582261","https://openalex.org/W1635771532","https://openalex.org/W1759780789","https://openalex.org/W1978086195","https://openalex.org/W1982267716","https://openalex.org/W1986214964","https://openalex.org/W1988496202","https://openalex.org/W2019488416","https://openalex.org/W2026353653","https://openalex.org/W2037036397","https://openalex.org/W2040411864","https://openalex.org/W2054335083","https://openalex.org/W2055887059","https://openalex.org/W2063749475","https://openalex.org/W2084619201","https://openalex.org/W2087240661","https://openalex.org/W2090422756","https://openalex.org/W2099982459","https://openalex.org/W2100371004","https://openalex.org/W2107067224","https://openalex.org/W2112090702","https://openalex.org/W2113654464","https://openalex.org/W2117502874","https://openalex.org/W2118446779","https://openalex.org/W2121470019","https://openalex.org/W2121564430","https://openalex.org/W2122964432","https://openalex.org/W2132582966","https://openalex.org/W2136850043","https://openalex.org/W2138003801","https://openalex.org/W2141537929","https://openalex.org/W2153635508","https://openalex.org/W2160556205","https://openalex.org/W2165533101","https://openalex.org/W2166574880"],"related_works":["https://openalex.org/W2193237397","https://openalex.org/W2090763504","https://openalex.org/W2084679820","https://openalex.org/W148178222","https://openalex.org/W2104657898","https://openalex.org/W2391644650","https://openalex.org/W1948992892","https://openalex.org/W2387003094","https://openalex.org/W1886884218","https://openalex.org/W1910826599"],"abstract_inverted_index":{"Protein":[0],"biochemical":[1],"functions":[2],"are":[3],"revealed":[4],"in":[5,36,39],"the":[6,12,57,65,70,87,96,103],"form":[7],"of":[8,56,89],"protein":[9,34,41,90],"complexes":[10,35],"from":[11],"Protein-Protein":[13],"Interaction":[14],"(PPI)":[15],"network.":[16],"In":[17,59],"this":[18],"paper,":[19],"we":[20],"propose":[21],"a":[22,53],"supervised":[23],"based":[24,98],"algorithm":[25],"by":[26],"combining":[27],"biological":[28,49],"and":[29,51,77,95],"topological":[30],"properties":[31,50],"to":[32],"detect":[33],"PPI":[37],"networks,":[38],"which":[40],"amino":[42,91],"acid":[43,92],"background":[44,93],"frequency":[45,94],"is":[46],"introduced":[47],"as":[48],"become":[52],"new":[54],"block":[55],"features.":[58],"comparison":[60],"with":[61],"other":[62],"established":[63],"methods,":[64],"evaluation":[66],"results":[67],"indicate":[68],"that":[69,86],"applied":[71],"method":[72,99],"can":[73,100],"achieve":[74],"comparable":[75],"performances":[76],"match":[78],"more":[79],"meaningful":[80],"real":[81],"complexes.":[82],"We":[83],"also":[84],"demonstrate":[85],"use":[88],"SVM":[97],"efficiently":[101],"improve":[102],"performance.":[104]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
