{"id":"https://openalex.org/W2070579511","doi":"https://doi.org/10.1504/ijdmb.2013.054698","title":"The significance of molecular mechanics property to protein evolution","display_name":"The significance of molecular mechanics property to protein evolution","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2070579511","doi":"https://doi.org/10.1504/ijdmb.2013.054698","mag":"2070579511","pmid":"https://pubmed.ncbi.nlm.nih.gov/23865166"},"language":"en","primary_location":{"id":"doi:10.1504/ijdmb.2013.054698","is_oa":true,"landing_page_url":"https://doi.org/10.1504/ijdmb.2013.054698","pdf_url":"https://www.inderscienceonline.com/doi/epdf/10.1504/IJDMB.2013.054698","source":{"id":"https://openalex.org/S35771696","display_name":"International Journal of Data Mining and Bioinformatics","issn_l":"1748-5673","issn":["1748-5673","1748-5681"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310317825","host_organization_name":"Inderscience Publishers","host_organization_lineage":["https://openalex.org/P4310317825"],"host_organization_lineage_names":["Inderscience Publishers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Data Mining and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://www.inderscienceonline.com/doi/epdf/10.1504/IJDMB.2013.054698","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100415160","display_name":"Limei Zhang","orcid":"https://orcid.org/0000-0002-5414-7396"},"institutions":[{"id":"https://openalex.org/I21193070","display_name":"Beijing Jiaotong University","ror":"https://ror.org/01yj56c84","country_code":"CN","type":"education","lineage":["https://openalex.org/I21193070"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Li Mei Zhang","raw_affiliation_strings":["School of Science, Beijing Jiaotong University, Beijing 100044, China","School of Science, Beijing Jiaotong University, Beijing 100044, China)"],"affiliations":[{"raw_affiliation_string":"School of Science, Beijing Jiaotong University, Beijing 100044, China","institution_ids":["https://openalex.org/I21193070"]},{"raw_affiliation_string":"School of Science, Beijing Jiaotong University, Beijing 100044, China)","institution_ids":["https://openalex.org/I21193070"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100352243","display_name":"Xin Liu","orcid":"https://orcid.org/0000-0002-5646-423X"},"institutions":[{"id":"https://openalex.org/I4210157653","display_name":"Institute of Mechanics","ror":"https://ror.org/057jnjd73","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210157653"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xin Liu","raw_affiliation_strings":["The State Key laboratory of Nonlinear Mechanics, Institute of Mechanics, Chinese Academy of Sciences, No. 15 Beisihuanxi Road, Beijing 100190, China","The State Key laboratory of Nonlinear Mechanics, Institute of Mechanics, Chinese Academy of Sciences, No. 15 Beisihuanxi Road, Beijing 100190, China#TAB#"],"affiliations":[{"raw_affiliation_string":"The State Key laboratory of Nonlinear Mechanics, Institute of Mechanics, Chinese Academy of Sciences, No. 15 Beisihuanxi Road, Beijing 100190, China","institution_ids":["https://openalex.org/I4210157653","https://openalex.org/I19820366"]},{"raw_affiliation_string":"The State Key laboratory of Nonlinear Mechanics, Institute of Mechanics, Chinese Academy of Sciences, No. 15 Beisihuanxi Road, Beijing 100190, China#TAB#","institution_ids":["https://openalex.org/I4210157653","https://openalex.org/I19820366"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100415160"],"corresponding_institution_ids":["https://openalex.org/I21193070"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.08618213,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"8","issue":"1","first_page":"83","last_page":"83"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/property","display_name":"Property (philosophy)","score":0.6145970821380615},{"id":"https://openalex.org/keywords/homology","display_name":"Homology (biology)","score":0.5771023035049438},{"id":"https://openalex.org/keywords/molecular-mechanics","display_name":"Molecular mechanics","score":0.511492133140564},{"id":"https://openalex.org/keywords/physical-property","display_name":"Physical property","score":0.4577227532863617},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4300304651260376},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4173041880130768},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3534872531890869},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.34948718547821045},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.32905834913253784},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.30809956789016724},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3052481710910797},{"id":"https://openalex.org/keywords/molecular-dynamics","display_name":"Molecular dynamics","score":0.1873856484889984},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.18619272112846375},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.18603339791297913},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.172578364610672},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.12655788660049438},{"id":"https://openalex.org/keywords/quantum-mechanics","display_name":"Quantum mechanics","score":0.08755293488502502}],"concepts":[{"id":"https://openalex.org/C189950617","wikidata":"https://www.wikidata.org/wiki/Q937228","display_name":"Property (philosophy)","level":2,"score":0.6145970821380615},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.5771023035049438},{"id":"https://openalex.org/C25057246","wikidata":"https://www.wikidata.org/wiki/Q1344441","display_name":"Molecular mechanics","level":3,"score":0.511492133140564},{"id":"https://openalex.org/C19149912","wikidata":"https://www.wikidata.org/wiki/Q4373292","display_name":"Physical property","level":2,"score":0.4577227532863617},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4300304651260376},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4173041880130768},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3534872531890869},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.34948718547821045},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.32905834913253784},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.30809956789016724},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3052481710910797},{"id":"https://openalex.org/C59593255","wikidata":"https://www.wikidata.org/wiki/Q901663","display_name":"Molecular dynamics","level":2,"score":0.1873856484889984},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.18619272112846375},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.18603339791297913},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.172578364610672},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.12655788660049438},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.08755293488502502}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1504/ijdmb.2013.054698","is_oa":true,"landing_page_url":"https://doi.org/10.1504/ijdmb.2013.054698","pdf_url":"https://www.inderscienceonline.com/doi/epdf/10.1504/IJDMB.2013.054698","source":{"id":"https://openalex.org/S35771696","display_name":"International Journal of Data Mining and Bioinformatics","issn_l":"1748-5673","issn":["1748-5673","1748-5681"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310317825","host_organization_name":"Inderscience Publishers","host_organization_lineage":["https://openalex.org/P4310317825"],"host_organization_lineage_names":["Inderscience Publishers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Data Mining and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23865166","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23865166","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International journal of data mining and bioinformatics","raw_type":null},{"id":"pmh:oai:dspace.imech.ac.cn:311007/47409","is_oa":false,"landing_page_url":"http://dspace.imech.ac.cn/handle/311007/47409","pdf_url":null,"source":{"id":"https://openalex.org/S4306400463","display_name":"\u4e2d\u56fd\u79d1\u5b66\u9662\u529b\u5b66\u7814\u7a76\u6240","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"\u671f\u520a\u8bba\u6587"}],"best_oa_location":{"id":"doi:10.1504/ijdmb.2013.054698","is_oa":true,"landing_page_url":"https://doi.org/10.1504/ijdmb.2013.054698","pdf_url":"https://www.inderscienceonline.com/doi/epdf/10.1504/IJDMB.2013.054698","source":{"id":"https://openalex.org/S35771696","display_name":"International Journal of Data Mining and Bioinformatics","issn_l":"1748-5673","issn":["1748-5673","1748-5681"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310317825","host_organization_name":"Inderscience Publishers","host_organization_lineage":["https://openalex.org/P4310317825"],"host_organization_lineage_names":["Inderscience Publishers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Data Mining and Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.6600000262260437}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2070579511.pdf","grobid_xml":"https://content.openalex.org/works/W2070579511.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1595347157","https://openalex.org/W1973369081","https://openalex.org/W1979754565","https://openalex.org/W1982496832","https://openalex.org/W1992579032","https://openalex.org/W1998675181","https://openalex.org/W2028841335","https://openalex.org/W2031772330","https://openalex.org/W2049888624","https://openalex.org/W2054086562","https://openalex.org/W2067693464","https://openalex.org/W2070783701","https://openalex.org/W2093946436","https://openalex.org/W2101362041","https://openalex.org/W2108708392","https://openalex.org/W2143210482","https://openalex.org/W2155201844","https://openalex.org/W2158714788","https://openalex.org/W2159259066","https://openalex.org/W2168851213","https://openalex.org/W2800227190","https://openalex.org/W3104156022","https://openalex.org/W3104383190","https://openalex.org/W6648819661","https://openalex.org/W6658413339","https://openalex.org/W6663221425","https://openalex.org/W6668198232","https://openalex.org/W6682784479"],"related_works":["https://openalex.org/W2414729539","https://openalex.org/W4298439279","https://openalex.org/W4213259494","https://openalex.org/W2049376260","https://openalex.org/W3171459531","https://openalex.org/W4297071397","https://openalex.org/W119187432","https://openalex.org/W2364766909","https://openalex.org/W2010546407","https://openalex.org/W2739868130"],"abstract_inverted_index":{"In":[0,71],"the":[1,20,31,35,40,45,62,79,91,108],"study":[2],"of":[3,22,30,42,56,64,74,81,93],"protein":[4,99,113],"homology,":[5],"multiple":[6],"physical":[7,51,66,83],"systems":[8],"that":[9,19,37],"correspond":[10],"to":[11,53,87,90,106],"different":[12,65,82],"proteins":[13],"must":[14],"be":[15,25,107],"jointly":[16],"considered,":[17],"such":[18],"similarity":[21],"homologs":[23],"can":[24],"explained":[26],"in":[27,98],"an":[28,72],"aspect":[29,73],"physics.":[32],"Compared":[33],"with":[34],"investigations":[36],"focus":[38],"on":[39],"character":[41],"certain":[43],"protein,":[44],"research":[46],"object":[47],"changes":[48],"from":[49],"one":[50],"system":[52],"a":[54],"set":[55],"systems.":[57],"For":[58],"this":[59],"enlarged":[60],"object,":[61],"importance":[63],"quantities":[67,84],"is":[68,104],"still":[69],"unclear.":[70],"hydrophobic":[75],"interaction,":[76],"we":[77],"rank":[78],"significance":[80],"here,":[85],"according":[86],"their":[88],"contribution":[89],"conservation":[92],"family":[94],"representative":[95],"biological":[96],"properties":[97],"evolution.":[100],"Molecular":[101],"mechanics":[102],"property":[103],"suggested":[105],"governing":[109],"factor":[110],"responsible":[111],"for":[112],"homology.":[114]},"counts_by_year":[],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
