{"id":"https://openalex.org/W2742609479","doi":"https://doi.org/10.1504/ijbra.2017.10006972","title":"Docking and molecular dynamics studies for developing Microcin C7 as an alternative drug against diphtheria toxin","display_name":"Docking and molecular dynamics studies for developing Microcin C7 as an alternative drug against diphtheria toxin","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2742609479","doi":"https://doi.org/10.1504/ijbra.2017.10006972","mag":"2742609479"},"language":"en","primary_location":{"id":"doi:10.1504/ijbra.2017.10006972","is_oa":false,"landing_page_url":"https://doi.org/10.1504/ijbra.2017.10006972","pdf_url":null,"source":{"id":"https://openalex.org/S207086575","display_name":"International Journal of Bioinformatics Research and Applications","issn_l":"1744-5485","issn":["1744-5485","1744-5493"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310317825","host_organization_name":"Inderscience Publishers","host_organization_lineage":["https://openalex.org/P4310317825"],"host_organization_lineage_names":["Inderscience Publishers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Bioinformatics Research and Applications","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101861328","display_name":"Subir Kundu","orcid":"https://orcid.org/0000-0002-3516-5505"},"institutions":[{"id":"https://openalex.org/I91357014","display_name":"Banaras Hindu University","ror":"https://ror.org/04cdn2797","country_code":"IN","type":"education","lineage":["https://openalex.org/I91357014"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Subir Kundu","raw_affiliation_strings":["School of Biochemical Engineering, Indian Institute of Technology (Banaras Hindu University), Varanasi, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biochemical Engineering, Indian Institute of Technology (Banaras Hindu University), Varanasi, India","institution_ids":["https://openalex.org/I91357014"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112390374","display_name":"Sumedha Ojha","orcid":null},"institutions":[{"id":"https://openalex.org/I91357014","display_name":"Banaras Hindu University","ror":"https://ror.org/04cdn2797","country_code":"IN","type":"education","lineage":["https://openalex.org/I91357014"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Sumedha Ojha","raw_affiliation_strings":["School of Biochemical Engineering, Indian Institute of Technology (Banaras Hindu University), Varanasi, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biochemical Engineering, Indian Institute of Technology (Banaras Hindu University), Varanasi, India","institution_ids":["https://openalex.org/I91357014"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I91357014"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.10803771,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"13","issue":"3","first_page":"292","last_page":"292"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13539","display_name":"thermodynamics and calorimetric analyses","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13539","display_name":"thermodynamics and calorimetric analyses","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9861000180244446,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9693999886512756,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/antimicrobial","display_name":"Antimicrobial","score":0.7607803344726562},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.5950049757957458},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.5240193605422974},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4835050404071808},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.4511033594608307},{"id":"https://openalex.org/keywords/diphtheria-toxin","display_name":"Diphtheria toxin","score":0.44798073172569275},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.37775832414627075},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36474066972732544},{"id":"https://openalex.org/keywords/toxin","display_name":"Toxin","score":0.36150258779525757},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.3337898850440979},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.32603147625923157},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1870325803756714},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.17726343870162964},{"id":"https://openalex.org/keywords/veterinary-medicine","display_name":"Veterinary medicine","score":0.08582037687301636}],"concepts":[{"id":"https://openalex.org/C4937899","wikidata":"https://www.wikidata.org/wiki/Q68541106","display_name":"Antimicrobial","level":2,"score":0.7607803344726562},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.5950049757957458},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.5240193605422974},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4835050404071808},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.4511033594608307},{"id":"https://openalex.org/C33057221","wikidata":"https://www.wikidata.org/wiki/Q421580","display_name":"Diphtheria toxin","level":3,"score":0.44798073172569275},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.37775832414627075},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36474066972732544},{"id":"https://openalex.org/C2777367657","wikidata":"https://www.wikidata.org/wiki/Q184651","display_name":"Toxin","level":2,"score":0.36150258779525757},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.3337898850440979},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.32603147625923157},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1870325803756714},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.17726343870162964},{"id":"https://openalex.org/C42972112","wikidata":"https://www.wikidata.org/wiki/Q170201","display_name":"Veterinary medicine","level":1,"score":0.08582037687301636}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1504/ijbra.2017.10006972","is_oa":false,"landing_page_url":"https://doi.org/10.1504/ijbra.2017.10006972","pdf_url":null,"source":{"id":"https://openalex.org/S207086575","display_name":"International Journal of Bioinformatics Research and Applications","issn_l":"1744-5485","issn":["1744-5485","1744-5493"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310317825","host_organization_name":"Inderscience Publishers","host_organization_lineage":["https://openalex.org/P4310317825"],"host_organization_lineage_names":["Inderscience Publishers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Bioinformatics Research and Applications","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.7099999785423279,"display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W1598729839","https://openalex.org/W2220912654","https://openalex.org/W1959132742","https://openalex.org/W1990076587","https://openalex.org/W1815074918","https://openalex.org/W1539759156","https://openalex.org/W1577623049","https://openalex.org/W2058877818","https://openalex.org/W120782368","https://openalex.org/W2014261048"],"abstract_inverted_index":{"Some":[0],"conventional":[1],"drugs":[2,38,63],"are":[3,64],"becoming":[4],"ineffective":[5],"these":[6],"days":[7],"for":[8,30],"the":[9,20,31,41,45,65,69,72,78,84,105,112,115],"treatment":[10],"of":[11,22,33,87,114],"diseases.":[12],"This":[13],"problem":[14],"arises":[15],"due":[16],"to":[17,51,58,110,147],"increase":[18],"in":[19],"incidences":[21],"drug-resistant":[23],"pathogens.":[24],"Thus,":[25],"there":[26],"is":[27],"a":[28],"need":[29],"development":[32],"alternative":[34,37,62,152],"drugs.":[35],"These":[36],"should":[39],"have":[40],"properties":[42],"against":[43,154],"which":[44],"microorganisms":[46],"will":[47],"not":[48],"be":[49,59,140],"able":[50],"develop":[52,148],"resistance.":[53],"The":[54,118],"most":[55],"promising":[56],"candidates":[57],"developed":[60],"as":[61,150],"antimicrobial":[66,79,143],"peptides.":[67],"In":[68],"present":[70],"study,":[71],"docking":[73],"studies":[74,107],"were":[75,108,129],"performed":[76],"between":[77],"peptide":[80,144],"Microcin":[81,102,145],"C7":[82,146],"and":[83,96,123,131],"catalytic":[85],"domain":[86],"diphtheria":[88,155],"toxin.":[89,156],"His21,":[90],"Gly22,":[91],"Thr42,":[92],"Tyr46,":[93],"Ala62,":[94],"Tyr65":[95],"Asn69":[97],"formed":[98],"non-bond":[99],"interactions":[100],"with":[101],"C7.":[103],"Furthermore,":[104],"simulation":[106],"done":[109,141],"find":[111],"stability":[113],"docked":[116],"complex.":[117],"root":[119,124],"mean":[120,125],"square":[121,126],"deviation":[122],"fluctuation":[127],"results":[128],"significant":[130],"hence":[132],"it":[133,149],"was":[134],"predicted":[135],"that":[136],"further":[137],"work":[138],"can":[139],"on":[142],"an":[151],"drug":[153]},"counts_by_year":[],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
