{"id":"https://openalex.org/W4237403061","doi":"https://doi.org/10.1504/ijbidm.2016.10002434","title":"BNEMiner: Mining Biomedical Literature for Extraction of Biological Target, Disease and Chemical Entities","display_name":"BNEMiner: Mining Biomedical Literature for Extraction of Biological Target, Disease and Chemical Entities","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W4237403061","doi":"https://doi.org/10.1504/ijbidm.2016.10002434"},"language":"en","primary_location":{"id":"doi:10.1504/ijbidm.2016.10002434","is_oa":false,"landing_page_url":"https://doi.org/10.1504/ijbidm.2016.10002434","pdf_url":null,"source":{"id":"https://openalex.org/S47982532","display_name":"International Journal of Business Intelligence and Data Mining","issn_l":"1743-8187","issn":["1743-8187","1743-8195"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310317825","host_organization_name":"Inderscience Publishers","host_organization_lineage":["https://openalex.org/P4310317825"],"host_organization_lineage_names":["Inderscience Publishers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Business Intelligence and Data Mining","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071743747","display_name":"Sindhuja Gopalan","orcid":null},"institutions":[{"id":"https://openalex.org/I33585257","display_name":"Anna University, Chennai","ror":"https://ror.org/01qhf1r47","country_code":"IN","type":"education","lineage":["https://openalex.org/I33585257"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Sindhuja Gopalan","raw_affiliation_strings":["AU-KBC Research Centre, MIT Campus, Anna University, Chennai, India"],"affiliations":[{"raw_affiliation_string":"AU-KBC Research Centre, MIT Campus, Anna University, Chennai, India","institution_ids":["https://openalex.org/I33585257"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103857051","display_name":"Sobha Lalitha Devi","orcid":null},"institutions":[{"id":"https://openalex.org/I33585257","display_name":"Anna University, Chennai","ror":"https://ror.org/01qhf1r47","country_code":"IN","type":"education","lineage":["https://openalex.org/I33585257"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Sobha Lalitha Devi","raw_affiliation_strings":["AU-KBC Research Centre, MIT Campus, Anna University, Chennai, India"],"affiliations":[{"raw_affiliation_string":"AU-KBC Research Centre, MIT Campus, Anna University, Chennai, India","institution_ids":["https://openalex.org/I33585257"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5071743747"],"corresponding_institution_ids":["https://openalex.org/I33585257"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.20939266,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"11","issue":"2","first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9818999767303467,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9592000246047974,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8975424766540527},{"id":"https://openalex.org/keywords/software-portability","display_name":"Software portability","score":0.7257566452026367},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.6664460897445679},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.6517194509506226},{"id":"https://openalex.org/keywords/crfs","display_name":"CRFS","score":0.5392524003982544},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.517410397529602},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.48440414667129517},{"id":"https://openalex.org/keywords/knowledge-extraction","display_name":"Knowledge extraction","score":0.4687967896461487},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.44122880697250366},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4279826283454895},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.42107588052749634},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.4172510802745819},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.41209664940834045},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.380791574716568},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3776785135269165},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3519290089607239},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.22838446497917175},{"id":"https://openalex.org/keywords/conditional-random-field","display_name":"Conditional random field","score":0.15721088647842407}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8975424766540527},{"id":"https://openalex.org/C63000827","wikidata":"https://www.wikidata.org/wiki/Q3080428","display_name":"Software portability","level":2,"score":0.7257566452026367},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.6664460897445679},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.6517194509506226},{"id":"https://openalex.org/C2775953691","wikidata":"https://www.wikidata.org/wiki/Q5013874","display_name":"CRFS","level":3,"score":0.5392524003982544},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.517410397529602},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.48440414667129517},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.4687967896461487},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.44122880697250366},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4279826283454895},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.42107588052749634},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.4172510802745819},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.41209664940834045},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.380791574716568},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3776785135269165},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3519290089607239},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.22838446497917175},{"id":"https://openalex.org/C152565575","wikidata":"https://www.wikidata.org/wiki/Q1124538","display_name":"Conditional random field","level":2,"score":0.15721088647842407},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1504/ijbidm.2016.10002434","is_oa":false,"landing_page_url":"https://doi.org/10.1504/ijbidm.2016.10002434","pdf_url":null,"source":{"id":"https://openalex.org/S47982532","display_name":"International Journal of Business Intelligence and Data Mining","issn_l":"1743-8187","issn":["1743-8187","1743-8195"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310317825","host_organization_name":"Inderscience Publishers","host_organization_lineage":["https://openalex.org/P4310317825"],"host_organization_lineage_names":["Inderscience Publishers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Business Intelligence and Data Mining","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.7799999713897705,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W1964783010","https://openalex.org/W2061834489","https://openalex.org/W2399696375","https://openalex.org/W45206245","https://openalex.org/W2548624545","https://openalex.org/W189110383","https://openalex.org/W2067424770","https://openalex.org/W4250494529","https://openalex.org/W2027233318","https://openalex.org/W4379379356"],"abstract_inverted_index":{"The":[0,21,127,136],"paper":[1],"presents":[2],"a":[3,73,103],"novel":[4,117],"application":[5],"to":[6],"extract":[7],"biomedical":[8,19,86],"entities":[9,62,84],"automatically":[10],"using":[11,92],"machine":[12,95],"learning":[13,96],"techniques":[14],"from":[15,45,63,85],"large":[16,24,46],"volumes":[17],"of":[18,35,42,56,78,105,144],"text.":[20],"data":[22,57],"in":[23],"quantities":[25],"are":[26],"accumulating":[27],"day":[28,30],"by":[29],"and":[31,82,112,118,124,141],"requires":[32],"automatic":[33],"extraction":[34,77],"information.":[36],"Data":[37],"mining":[38,58],"is":[39,53],"the":[40,54,90,98,139,142,145],"science":[41],"extracting":[43],"information":[44],"data.":[47],"Biomedical":[48],"Named":[49],"entity":[50],"recognition":[51],"(BioNER)":[52],"task":[55],"that":[59],"extracts":[60],"named":[61],"biological":[64,79],"texts.":[65,87],"In":[66],"this":[67],"paper,":[68],"we":[69],"focus":[70],"on":[71],"developing":[72],"BioNER":[74],"system":[75,91,128],"for":[76],"target,":[80],"disease":[81],"chemical":[83],"We":[88,100],"developed":[89],"graphical":[93],"based":[94],"technique":[97],"CRFs.":[99],"have":[101],"applied":[102],"set":[104],"diverse":[106],"features":[107,114],"containing":[108],"standard":[109],"lexical,":[110],"syntactic":[111],"orthographic":[113],"combined":[115],"with":[116,131],"biologically":[119],"inspired":[120],"features,":[121],"action":[122],"terms":[123],"process":[125],"verbs.":[126],"was":[129],"evaluated":[130],"three":[132],"widely":[133],"recognised":[134],"datasets.":[135],"results":[137],"demonstrated":[138],"portability":[140],"potency":[143],"system.":[146]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
