{"id":"https://openalex.org/W3041053470","doi":"https://doi.org/10.14529/jsfi200102","title":"Development of Computational Pipeline Software for Genome/Exome Analysis on the K Computer","display_name":"Development of Computational Pipeline Software for Genome/Exome Analysis on the K Computer","publication_year":2020,"publication_date":"2020-03-01","ids":{"openalex":"https://openalex.org/W3041053470","doi":"https://doi.org/10.14529/jsfi200102","mag":"3041053470"},"language":"en","primary_location":{"id":"doi:10.14529/jsfi200102","is_oa":true,"landing_page_url":"https://doi.org/10.14529/jsfi200102","pdf_url":"https://superfri.org/superfri/article/download/294/342","source":{"id":"https://openalex.org/S4210177204","display_name":"Supercomputing Frontiers and Innovations","issn_l":"2313-8734","issn":["2313-8734","2409-6008"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310312680","host_organization_name":"Publishing center of the South Ural State University","host_organization_lineage":["https://openalex.org/P4310312680"],"host_organization_lineage_names":["Publishing center of the South Ural State University"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Supercomputing Frontiers and Innovations","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://superfri.org/superfri/article/download/294/342","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091700996","display_name":"Kento Aoyama","orcid":null},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]},{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]},{"id":"https://openalex.org/I74640424","display_name":"Advanced Institute of Industrial Technology","ror":"https://ror.org/04f9apy08","country_code":"JP","type":"education","lineage":["https://openalex.org/I74640424"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kento Aoyama","raw_affiliation_strings":["Tokyo Institute of Technology; National Institute of Advanced Industrial Science and Technology","National Institute of Advanced Industrial Science and Technology","Tokyo Institute of Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tokyo Institute of Technology; National Institute of Advanced Industrial Science and Technology","institution_ids":["https://openalex.org/I73613424","https://openalex.org/I74640424"]},{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology","institution_ids":["https://openalex.org/I73613424"]},{"raw_affiliation_string":"Tokyo Institute of Technology","institution_ids":["https://openalex.org/I114531698"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069175945","display_name":"Masanori Kakuta","orcid":"https://orcid.org/0000-0003-4978-2827"},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masanori Kakuta","raw_affiliation_strings":["Tokyo Institute of Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tokyo Institute of Technology","institution_ids":["https://openalex.org/I114531698"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101498880","display_name":"Yuri Matsuzaki","orcid":"https://orcid.org/0000-0002-6129-6883"},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yuri Matsuzaki","raw_affiliation_strings":["Tokyo Institute of Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tokyo Institute of Technology","institution_ids":["https://openalex.org/I114531698"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004756730","display_name":"Takashi Ishida","orcid":"https://orcid.org/0000-0002-9478-3223"},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takashi Ishida","raw_affiliation_strings":["Tokyo Institute of Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tokyo Institute of Technology","institution_ids":["https://openalex.org/I114531698"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061510293","display_name":"Masahito Ohue","orcid":"https://orcid.org/0000-0002-0120-1643"},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masahito Ohue","raw_affiliation_strings":["Tokyo Institute of Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tokyo Institute of Technology","institution_ids":["https://openalex.org/I114531698"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067025136","display_name":"Yutaka Akiyama","orcid":"https://orcid.org/0000-0003-2863-8703"},"institutions":[{"id":"https://openalex.org/I114531698","display_name":"Tokyo Institute of Technology","ror":"https://ror.org/0112mx960","country_code":"JP","type":"education","lineage":["https://openalex.org/I114531698"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yutaka Akiyama","raw_affiliation_strings":["Tokyo Institute of Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tokyo Institute of Technology","institution_ids":["https://openalex.org/I114531698"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.11543293,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"7","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9793999791145325,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9793999791145325,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9772999882698059,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9671000242233276,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8158220052719116},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.8000773191452026},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5923562049865723},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5843508243560791},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5636444091796875},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.43820804357528687},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3990877866744995},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36329254508018494},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3447449803352356},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.21598458290100098},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.14673671126365662},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08841755986213684}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8158220052719116},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.8000773191452026},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5923562049865723},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5843508243560791},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5636444091796875},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.43820804357528687},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3990877866744995},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36329254508018494},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3447449803352356},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.21598458290100098},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.14673671126365662},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08841755986213684},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.14529/jsfi200102","is_oa":true,"landing_page_url":"https://doi.org/10.14529/jsfi200102","pdf_url":"https://superfri.org/superfri/article/download/294/342","source":{"id":"https://openalex.org/S4210177204","display_name":"Supercomputing Frontiers and Innovations","issn_l":"2313-8734","issn":["2313-8734","2409-6008"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310312680","host_organization_name":"Publishing center of the South Ural State University","host_organization_lineage":["https://openalex.org/P4310312680"],"host_organization_lineage_names":["Publishing center of the South Ural State University"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Supercomputing Frontiers and Innovations","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.14529/jsfi200102","is_oa":true,"landing_page_url":"https://doi.org/10.14529/jsfi200102","pdf_url":"https://superfri.org/superfri/article/download/294/342","source":{"id":"https://openalex.org/S4210177204","display_name":"Supercomputing Frontiers and Innovations","issn_l":"2313-8734","issn":["2313-8734","2409-6008"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310312680","host_organization_name":"Publishing center of the South Ural State University","host_organization_lineage":["https://openalex.org/P4310312680"],"host_organization_lineage_names":["Publishing center of the South Ural State University"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Supercomputing Frontiers and Innovations","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W188202134","https://openalex.org/W2029380707","https://openalex.org/W2397952901","https://openalex.org/W2465382974","https://openalex.org/W4382045703","https://openalex.org/W3181407718"],"abstract_inverted_index":{"Pipeline":[0],"software":[1,38,62,88,99],"that":[2,100,124],"comprise":[3],"tool":[4],"and":[5,74,83],"application":[6],"chains":[7],"for":[8,39],"specific":[9],"data":[10,21,52],"processing":[11],"have":[12],"found":[13],"extensive":[14],"utilization":[15,41],"in":[16,26,31,63],"the":[17,129,138,147,185],"analysis":[18,33,97],"of":[19,36,42,49,60,80,87,113,132,137,180],"several":[20,174],"types,":[22],"such":[23],"as":[24,193],"genome,":[25],"bioinformatics":[27,64],"research.":[28],"Recent":[29],"trends":[30],"genome":[32],"require":[34],"use":[35,59],"pipeline":[37,61,98,119,149,182,191,198],"optimum":[40],"computational":[43],"resources,":[44],"thereby":[45],"facilitating":[46],"efficient":[47],"handling":[48],"large-scale":[50],"biological":[51],"accumulated":[53],"on":[54,109],"a":[55,84,93,110,167,181,194],"daily":[56],"basis.":[57],"However,":[58],"tends":[65],"to":[66,70,146,176,189],"be":[67,107],"problematic":[68],"owing":[69],"their":[71],"large":[72,111],"memory":[73],"storage":[75],"capacity":[76],"requirements,":[77],"increasing":[78],"number":[79,112],"job":[81],"submissions,":[82],"wide":[85],"range":[86],"dependencies.":[89],"This":[90],"paper":[91],"presents":[92],"massive":[94],"parallel":[95],"genome/exome":[96],"addresses":[101],"these":[102],"difficulties.":[103],"Additionally,":[104,170],"it":[105],"can":[106],"executed":[108],"K":[114],"computer":[115],"nodes.":[116,169],"The":[117],"proposed":[118],"incorporates":[120],"workflow":[121],"management":[122],"functionality":[123],"performs":[125],"effectively":[126],"when":[127,164],"considering":[128,184],"task-dependency":[130],"graph":[131],"internal":[133,190],"executions":[134,192],"via":[135,152],"extension":[136],"dynamic":[139],"task":[140],"distribution":[141],"framework.":[142],"Performance":[143],"results":[144],"pertaining":[145,188],"core":[148],"functionality,":[150],"obtained":[151],"evaluation":[153],"experiments":[154],"performed":[155],"using":[156,165],"an":[157],"actual":[158],"exome":[159],"dataset,":[160],"demonstrate":[161],"good":[162],"scalability":[163],"over":[166],"thousand":[168],"this":[171],"study":[172],"proposes":[173],"approaches":[175],"resolve":[177],"performance":[178],"bottlenecks":[179],"by":[183],"domain":[186],"knowledge":[187],"major":[195],"challenge":[196],"facing":[197],"parallelization.":[199]},"counts_by_year":[],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2020-07-16T00:00:00"}
