{"id":"https://openalex.org/W2022630637","doi":"https://doi.org/10.1385/ni:2:3:327","title":"Semi-Automated Population of an Online Database of Neuronal Models (ModelDB) With Citation Information, Using PubMed for Validation","display_name":"Semi-Automated Population of an Online Database of Neuronal Models (ModelDB) With Citation Information, Using PubMed for Validation","publication_year":2004,"publication_date":"2004-01-01","ids":{"openalex":"https://openalex.org/W2022630637","doi":"https://doi.org/10.1385/ni:2:3:327","mag":"2022630637","pmid":"https://pubmed.ncbi.nlm.nih.gov/15365194"},"language":"en","primary_location":{"id":"doi:10.1385/ni:2:3:327","is_oa":false,"landing_page_url":"https://doi.org/10.1385/ni:2:3:327","pdf_url":null,"source":{"id":"https://openalex.org/S3444786","display_name":"Neuroinformatics","issn_l":"1539-2791","issn":["1539-2791","1559-0089"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103123296","display_name":"Andrew P. Davison","orcid":"https://orcid.org/0000-0002-4793-7541"},"institutions":[{"id":"https://openalex.org/I4210153407","display_name":"Laboratoire de Neurobiologie Cellulaire et Mol\u00e9culaire","ror":"https://ror.org/0452rtt80","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210114748","https://openalex.org/I4210139971","https://openalex.org/I4210153407"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Andrew P. Davison","raw_affiliation_strings":["Centre National de la Recherche Scientifique, 1 Avenue de la Terrasse (Bat. 33) 91198 Gif-sur-Yvette, France","Unit\u00e9 de neurosciences int\u00e9gratives et computationnelles","Institut de Neurobiologie Alfred Fessard"],"affiliations":[{"raw_affiliation_string":"Centre National de la Recherche Scientifique, 1 Avenue de la Terrasse (Bat. 33) 91198 Gif-sur-Yvette, France","institution_ids":[]},{"raw_affiliation_string":"Unit\u00e9 de neurosciences int\u00e9gratives et computationnelles","institution_ids":[]},{"raw_affiliation_string":"Institut de Neurobiologie Alfred Fessard","institution_ids":["https://openalex.org/I4210153407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088914228","display_name":"Thomas M. Morse","orcid":"https://orcid.org/0000-0002-2902-8272"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas M. Morse","raw_affiliation_strings":["Department of Neurobiology, Yale University School of Medicine, 333 Cedar Street, New Haven, CT","Department of Neurobiology, Computer Science"],"affiliations":[{"raw_affiliation_string":"Department of Neurobiology, Yale University School of Medicine, 333 Cedar Street, New Haven, CT","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"Department of Neurobiology, Computer Science","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084672179","display_name":"Michele Migliore","orcid":"https://orcid.org/0000-0002-7584-6292"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"funder","lineage":["https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]},{"id":"https://openalex.org/I197604219","display_name":"National Academies of Sciences, Engineering, and Medicine","ror":"https://ror.org/02eq2w707","country_code":"US","type":"government","lineage":["https://openalex.org/I197604219"]},{"id":"https://openalex.org/I4210089928","display_name":"Czech Academy of Sciences, Institute of Biophysics","ror":"https://ror.org/00angvn73","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210089928"]}],"countries":["CZ","IT","US"],"is_corresponding":false,"raw_author_name":"Michele Migliore","raw_affiliation_strings":["Department of Neurobiology, Yale University School of Medicine, 333 Cedar Street, New Haven, CT","Institute of Biophysics, National Research Council, Palermo, Italy","Institute of Biophysics, National Research Council","Department of Neurobiology, Computer Science"],"affiliations":[{"raw_affiliation_string":"Department of Neurobiology, Yale University School of Medicine, 333 Cedar Street, New Haven, CT","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"Institute of Biophysics, National Research Council, Palermo, Italy","institution_ids":["https://openalex.org/I4210155236"]},{"raw_affiliation_string":"Institute of Biophysics, National Research Council","institution_ids":["https://openalex.org/I4210089928","https://openalex.org/I197604219"]},{"raw_affiliation_string":"Department of Neurobiology, Computer Science","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052931874","display_name":"Gordon M. Shepherd","orcid":"https://orcid.org/0000-0002-1455-8262"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gordon M. Shepherd","raw_affiliation_strings":["Department of Neurobiology, Yale University School of Medicine, 333 Cedar Street, New Haven, CT","Department of Neurobiology, Computer Science"],"affiliations":[{"raw_affiliation_string":"Department of Neurobiology, Yale University School of Medicine, 333 Cedar Street, New Haven, CT","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"Department of Neurobiology, Computer Science","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027748067","display_name":"Michael L. Hines","orcid":"https://orcid.org/0000-0003-1830-7433"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael L. Hines","raw_affiliation_strings":["Department of Neurobiology, Yale University School of Medicine, 333 Cedar Street, New Haven, CT","Department of Neurobiology, Computer Science"],"affiliations":[{"raw_affiliation_string":"Department of Neurobiology, Yale University School of Medicine, 333 Cedar Street, New Haven, CT","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"Department of Neurobiology, Computer Science","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5103123296"],"corresponding_institution_ids":["https://openalex.org/I4210153407"],"apc_list":{"value":3190,"currency":"EUR","value_usd":4190},"apc_paid":null,"fwci":0.8398,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.69730898,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"2","issue":"3","first_page":"327","last_page":"332"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9883000254631042,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9603000283241272,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.9199137687683105},{"id":"https://openalex.org/keywords/citation","display_name":"Citation","score":0.796839714050293},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7925655245780945},{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.7920856475830078},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.7115874886512756},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6132659316062927},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.42219799757003784},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.37119919061660767},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3663909137248993},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.23211854696273804},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.20685335993766785},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.10629075765609741}],"concepts":[{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.9199137687683105},{"id":"https://openalex.org/C2778805511","wikidata":"https://www.wikidata.org/wiki/Q1713","display_name":"Citation","level":2,"score":0.796839714050293},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7925655245780945},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.7920856475830078},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.7115874886512756},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6132659316062927},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.42219799757003784},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.37119919061660767},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3663909137248993},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.23211854696273804},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.20685335993766785},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.10629075765609741},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008959","descriptor_name":"Models, Neurological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009862","descriptor_name":"Online Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009862","descriptor_name":"Online Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009862","descriptor_name":"Online Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D011643","descriptor_name":"Publishing","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D011643","descriptor_name":"Publishing","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D011643","descriptor_name":"Publishing","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D016206","descriptor_name":"Databases, Bibliographic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016206","descriptor_name":"Databases, Bibliographic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016206","descriptor_name":"Databases, Bibliographic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":"Q000600","qualifier_name":"supply & distribution","is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":"Q000600","qualifier_name":"supply & distribution","is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":"Q000600","qualifier_name":"supply & distribution","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1385/ni:2:3:327","is_oa":false,"landing_page_url":"https://doi.org/10.1385/ni:2:3:327","pdf_url":null,"source":{"id":"https://openalex.org/S3444786","display_name":"Neuroinformatics","issn_l":"1539-2791","issn":["1539-2791","1559-0089"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":"journal-article"},{"id":"pmid:15365194","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/15365194","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neuroinformatics","raw_type":null},{"id":"pmh:oai:HAL:hal-00299855v1","is_oa":false,"landing_page_url":"https://hal.science/hal-00299855","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Neuroinformatics, 2004, 2 (3), pp.327-32. &#x27E8;10.1385/NI:2:3:327&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:europepmc.org:2742872","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3752282","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.46000000834465027,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337346","display_name":"National Institute of Mental Health","ror":"https://ror.org/04xeg9z08"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337359","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W1363590","https://openalex.org/W171071382","https://openalex.org/W1840032143","https://openalex.org/W1988781412","https://openalex.org/W2034339901","https://openalex.org/W2064354742"],"related_works":["https://openalex.org/W2331989206","https://openalex.org/W3173828731","https://openalex.org/W45658120","https://openalex.org/W2008612003","https://openalex.org/W613088223","https://openalex.org/W4287121746","https://openalex.org/W2045950409","https://openalex.org/W4394260427","https://openalex.org/W2739025131","https://openalex.org/W4205178530"],"abstract_inverted_index":null,"counts_by_year":[{"year":2015,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
