{"id":"https://openalex.org/W4309494720","doi":"https://doi.org/10.1371/journal.pcbi.1010667","title":"Amino acid variants of SARS-CoV-2 papain-like protease have impact on drug binding","display_name":"Amino acid variants of SARS-CoV-2 papain-like protease have impact on drug binding","publication_year":2022,"publication_date":"2022-11-21","ids":{"openalex":"https://openalex.org/W4309494720","doi":"https://doi.org/10.1371/journal.pcbi.1010667","pmid":"https://pubmed.ncbi.nlm.nih.gov/36409737"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1010667","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010667","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010667&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010667&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029413674","display_name":"Agata P. Perlinska","orcid":"https://orcid.org/0000-0003-2806-1190"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Agata P. Perlinska","raw_affiliation_strings":["Centre of New Technologies, University of Warsaw, Warsaw, Poland"],"raw_orcid":"https://orcid.org/0000-0003-2806-1190","affiliations":[{"raw_affiliation_string":"Centre of New Technologies, University of Warsaw, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005357579","display_name":"Adam Stasiulewicz","orcid":"https://orcid.org/0000-0003-3346-5579"},"institutions":[{"id":"https://openalex.org/I268303160","display_name":"Medical University of Warsaw","ror":"https://ror.org/04p2y4s44","country_code":"PL","type":"education","lineage":["https://openalex.org/I268303160"]},{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Adam Stasiulewicz","raw_affiliation_strings":["Centre of New Technologies, University of Warsaw, Warsaw, Poland","Department of Drug Chemistry, Faculty of Pharmacy, Medical University of Warsaw, Warsaw, Poland"],"raw_orcid":"https://orcid.org/0000-0003-3346-5579","affiliations":[{"raw_affiliation_string":"Centre of New Technologies, University of Warsaw, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"Department of Drug Chemistry, Faculty of Pharmacy, Medical University of Warsaw, Warsaw, Poland","institution_ids":["https://openalex.org/I268303160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082661201","display_name":"Mai Lan Nguyen","orcid":"https://orcid.org/0000-0001-8117-0391"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Mai Lan Nguyen","raw_affiliation_strings":["Centre of New Technologies, University of Warsaw, Warsaw, Poland","Faculty of Mathematics, Informatics and Mechanics, University of Warsaw, Warsaw, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre of New Technologies, University of Warsaw, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"Faculty of Mathematics, Informatics and Mechanics, University of Warsaw, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045238134","display_name":"K. \u015awiderska","orcid":"https://orcid.org/0000-0002-1495-3019"},"institutions":[{"id":"https://openalex.org/I11923345","display_name":"Wroc\u0142aw University of Science and Technology","ror":"https://ror.org/008fyn775","country_code":"PL","type":"education","lineage":["https://openalex.org/I11923345"]},{"id":"https://openalex.org/I686019","display_name":"AGH University of Krakow","ror":"https://ror.org/00bas1c41","country_code":"PL","type":"education","lineage":["https://openalex.org/I686019"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Karolina Swiderska","raw_affiliation_strings":["Department of Chemical Biology and Bioimaging, Wroclaw University of Science and Technology, Wroclaw, Poland"],"raw_orcid":"https://orcid.org/0000-0002-1495-3019","affiliations":[{"raw_affiliation_string":"Department of Chemical Biology and Bioimaging, Wroclaw University of Science and Technology, Wroclaw, Poland","institution_ids":["https://openalex.org/I11923345","https://openalex.org/I686019"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015565222","display_name":"Miko\u0142aj \u017bmudzi\u0144ski","orcid":"https://orcid.org/0000-0002-9792-9160"},"institutions":[{"id":"https://openalex.org/I11923345","display_name":"Wroc\u0142aw University of Science and Technology","ror":"https://ror.org/008fyn775","country_code":"PL","type":"education","lineage":["https://openalex.org/I11923345"]},{"id":"https://openalex.org/I686019","display_name":"AGH University of Krakow","ror":"https://ror.org/00bas1c41","country_code":"PL","type":"education","lineage":["https://openalex.org/I686019"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Mikolaj Zmudzinski","raw_affiliation_strings":["Department of Chemical Biology and Bioimaging, Wroclaw University of Science and Technology, Wroclaw, Poland"],"raw_orcid":"https://orcid.org/0000-0002-9792-9160","affiliations":[{"raw_affiliation_string":"Department of Chemical Biology and Bioimaging, Wroclaw University of Science and Technology, Wroclaw, Poland","institution_ids":["https://openalex.org/I11923345","https://openalex.org/I686019"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001091728","display_name":"Alicja W. Maksymiuk","orcid":"https://orcid.org/0000-0001-6377-321X"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["GB","PL"],"is_corresponding":false,"raw_author_name":"Alicja W. Maksymiuk","raw_affiliation_strings":["Centre of New Technologies, University of Warsaw, Warsaw, Poland","Department of Genetics, University of Cambridge, Cambridge, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0001-6377-321X","affiliations":[{"raw_affiliation_string":"Centre of New Technologies, University of Warsaw, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"Department of Genetics, University of Cambridge, Cambridge, United Kingdom","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000997540","display_name":"Marcin Dr\u0105g","orcid":"https://orcid.org/0000-0001-8510-1967"},"institutions":[{"id":"https://openalex.org/I11923345","display_name":"Wroc\u0142aw University of Science and Technology","ror":"https://ror.org/008fyn775","country_code":"PL","type":"education","lineage":["https://openalex.org/I11923345"]},{"id":"https://openalex.org/I686019","display_name":"AGH University of Krakow","ror":"https://ror.org/00bas1c41","country_code":"PL","type":"education","lineage":["https://openalex.org/I686019"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Marcin Drag","raw_affiliation_strings":["Department of Chemical Biology and Bioimaging, Wroclaw University of Science and Technology, Wroclaw, Poland"],"raw_orcid":"https://orcid.org/0000-0001-8510-1967","affiliations":[{"raw_affiliation_string":"Department of Chemical Biology and Bioimaging, Wroclaw University of Science and Technology, Wroclaw, Poland","institution_ids":["https://openalex.org/I11923345","https://openalex.org/I686019"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013867366","display_name":"Joanna I. Su\u0142kowska","orcid":"https://orcid.org/0000-0003-2452-0724"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Joanna I. Sulkowska","raw_affiliation_strings":["Centre of New Technologies, University of Warsaw, Warsaw, Poland"],"raw_orcid":"https://orcid.org/0000-0003-2452-0724","affiliations":[{"raw_affiliation_string":"Centre of New Technologies, University of Warsaw, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5013867366"],"corresponding_institution_ids":["https://openalex.org/I4654613"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.2112,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.80473131,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"18","issue":"11","first_page":"e1010667","last_page":"e1010667"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11754","display_name":"SARS-CoV-2 detection and testing","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.980400025844574,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/papain","display_name":"Papain","score":0.7429531216621399},{"id":"https://openalex.org/keywords/protease","display_name":"Protease","score":0.7263627052307129},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.4886048436164856},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.48407259583473206},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.4815119206905365},{"id":"https://openalex.org/keywords/coronavirus","display_name":"Coronavirus","score":0.47193261981010437},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.4677318036556244},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.44206297397613525},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.44146984815597534},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.4358028173446655},{"id":"https://openalex.org/keywords/protease-inhibitor","display_name":"Protease inhibitor (pharmacology)","score":0.435148686170578},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome","display_name":"Severe acute respiratory syndrome","score":0.4315238296985626},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4112612009048462},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.40840673446655273},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.27816125750541687},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.26536887884140015},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2568514943122864},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.21643435955047607},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.17769798636436462},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.17033419013023376}],"concepts":[{"id":"https://openalex.org/C2779832904","wikidata":"https://www.wikidata.org/wiki/Q410420","display_name":"Papain","level":3,"score":0.7429531216621399},{"id":"https://openalex.org/C2776714187","wikidata":"https://www.wikidata.org/wiki/Q212410","display_name":"Protease","level":3,"score":0.7263627052307129},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.4886048436164856},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.48407259583473206},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.4815119206905365},{"id":"https://openalex.org/C2777648638","wikidata":"https://www.wikidata.org/wiki/Q57751738","display_name":"Coronavirus","level":5,"score":0.47193261981010437},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.4677318036556244},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.44206297397613525},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.44146984815597534},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.4358028173446655},{"id":"https://openalex.org/C2781143361","wikidata":"https://www.wikidata.org/wiki/Q55761529","display_name":"Protease inhibitor (pharmacology)","level":5,"score":0.435148686170578},{"id":"https://openalex.org/C2778859668","wikidata":"https://www.wikidata.org/wiki/Q103177","display_name":"Severe acute respiratory syndrome","level":5,"score":0.4315238296985626},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4112612009048462},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.40840673446655273},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.27816125750541687},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.26536887884140015},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2568514943122864},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.21643435955047607},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.17769798636436462},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.17033419013023376},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.0},{"id":"https://openalex.org/C142462285","wikidata":"https://www.wikidata.org/wiki/Q2528140","display_name":"Viral load","level":3,"score":0.0},{"id":"https://openalex.org/C2993143319","wikidata":"https://www.wikidata.org/wiki/Q583050","display_name":"Antiretroviral therapy","level":4,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086882","descriptor_name":"Coronavirus Papain-Like Proteases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086882","descriptor_name":"Coronavirus Papain-Like Proteases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086882","descriptor_name":"Coronavirus Papain-Like Proteases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000086882","descriptor_name":"Coronavirus Papain-Like Proteases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010206","descriptor_name":"Papain","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010206","descriptor_name":"Papain","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010206","descriptor_name":"Papain","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010206","descriptor_name":"Papain","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010206","descriptor_name":"Papain","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010206","descriptor_name":"Papain","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010206","descriptor_name":"Papain","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010206","descriptor_name":"Papain","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010447","descriptor_name":"Peptide Hydrolases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010447","descriptor_name":"Peptide Hydrolases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010447","descriptor_name":"Peptide Hydrolases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010447","descriptor_name":"Peptide Hydrolases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1371/journal.pcbi.1010667","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010667","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010667&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:36409737","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36409737","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:a93dbfcd30ab48748e464f2830d40c68","is_oa":true,"landing_page_url":"https://doaj.org/article/a93dbfcd30ab48748e464f2830d40c68","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 11, p e1010667 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9721480","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9721480","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:www.repository.cam.ac.uk:1810/344038","is_oa":true,"landing_page_url":"https://www.repository.cam.ac.uk/handle/1810/344038","pdf_url":null,"source":{"id":"https://openalex.org/S4306401777","display_name":"Apollo (University of Cambridge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I241749","host_organization_name":"University of Cambridge","host_organization_lineage":["https://openalex.org/I241749"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:www.repository.cam.ac.uk:1810/344727","is_oa":true,"landing_page_url":"https://www.repository.cam.ac.uk/handle/1810/344727","pdf_url":null,"source":{"id":"https://openalex.org/S4306401777","display_name":"Apollo (University of Cambridge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I241749","host_organization_name":"University of Cambridge","host_organization_lineage":["https://openalex.org/I241749"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"nlmid: 101238922","raw_type":"Article"},{"id":"doi:10.17863/cam.91462","is_oa":true,"landing_page_url":"https://doi.org/10.17863/cam.91462","pdf_url":null,"source":{"id":"https://openalex.org/S7407050737","display_name":"Apollo","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"},{"id":"doi:10.17863/cam.92149","is_oa":true,"landing_page_url":"https://doi.org/10.17863/cam.92149","pdf_url":null,"source":{"id":"https://openalex.org/S7407050737","display_name":"Apollo","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1010667","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010667","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010667&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.7599999904632568}],"awards":[{"id":"https://openalex.org/G1700056176","display_name":null,"funder_award_id":"2018/31/B/NZ1/04016","funder_id":"https://openalex.org/F4320322511","funder_display_name":"Narodowe Centrum Nauki"},{"id":"https://openalex.org/G4970178504","display_name":null,"funder_award_id":"2020/01/0/NZ1/00063","funder_id":"https://openalex.org/F4320322511","funder_display_name":"Narodowe Centrum Nauki"},{"id":"https://openalex.org/G6812818217","display_name":null,"funder_award_id":"2020/01/0/NZ7/00244","funder_id":"https://openalex.org/F4320322511","funder_display_name":"Narodowe Centrum Nauki"},{"id":"https://openalex.org/G7825628281","display_name":null,"funder_award_id":"TEAM/2017-4/32","funder_id":"https://openalex.org/F4320321042","funder_display_name":"Fundacja na rzecz Nauki Polskiej"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321042","display_name":"Fundacja na rzecz Nauki Polskiej","ror":"https://ror.org/048zd9m77"},{"id":"https://openalex.org/F4320322511","display_name":"Narodowe Centrum Nauki","ror":"https://ror.org/03ha2q922"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4309494720.pdf","grobid_xml":"https://content.openalex.org/works/W4309494720.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W311927316","https://openalex.org/W1967407510","https://openalex.org/W1968261613","https://openalex.org/W1970232220","https://openalex.org/W1973395347","https://openalex.org/W1997713382","https://openalex.org/W2010076108","https://openalex.org/W2056022472","https://openalex.org/W2605968187","https://openalex.org/W2886709672","https://openalex.org/W2920836828","https://openalex.org/W2963895440","https://openalex.org/W3002108456","https://openalex.org/W3020188044","https://openalex.org/W3022254624","https://openalex.org/W3024964904","https://openalex.org/W3035265089","https://openalex.org/W3038958209","https://openalex.org/W3040116040","https://openalex.org/W3042497846","https://openalex.org/W3046218096","https://openalex.org/W3080855264","https://openalex.org/W3088756662","https://openalex.org/W3092050068","https://openalex.org/W3092736134","https://openalex.org/W3108497759","https://openalex.org/W3116015992","https://openalex.org/W3116277326","https://openalex.org/W3119517955","https://openalex.org/W3125420835","https://openalex.org/W3126232912","https://openalex.org/W3127852352","https://openalex.org/W3128838276","https://openalex.org/W3130724183","https://openalex.org/W3133551348","https://openalex.org/W3144337241","https://openalex.org/W3154805970","https://openalex.org/W3156220327","https://openalex.org/W6787358332","https://openalex.org/W7019487612"],"related_works":["https://openalex.org/W2151056719","https://openalex.org/W2781122945","https://openalex.org/W4230319148","https://openalex.org/W2091035713","https://openalex.org/W2402288054","https://openalex.org/W2178059071","https://openalex.org/W2120338717","https://openalex.org/W2020436890","https://openalex.org/W1245749104","https://openalex.org/W3171689025"],"abstract_inverted_index":{"The":[0],"novel":[1],"severe":[2],"acute":[3],"respiratory":[4],"syndrome":[5],"coronavirus":[6],"2":[7],"(SARS-CoV-2)":[8],"has":[9,86],"caused":[10],"both":[11],"a":[12,53,80],"health":[13],"and":[14,119,136,145],"economic":[15],"crisis":[16],"around":[17],"the":[18,27,40,43,59,64,101,110,139],"world.":[19],"Its":[20],"papain-like":[21],"protease":[22],"(PLpro)":[23],"is":[24,67],"one":[25],"of":[26,56,61,63,104,112],"protein":[28,65],"targets":[29],"utilized":[30],"in":[31,39,97,138],"designing":[32],"new":[33],"drugs":[34],"that":[35,132],"would":[36],"aid":[37],"vaccines":[38],"fight":[41],"against":[42],"virus.":[44],"Although":[45],"there":[46],"are":[47],"already":[48],"several":[49],"potential":[50,103],"candidates":[51],"for":[52],"good":[54],"inhibitor":[55],"this":[57,105],"protein,":[58],"degree":[60],"variability":[62,85],"itself":[66],"not":[68,87],"taken":[69],"into":[70],"account.":[71],"As":[72],"an":[73],"RNA":[74],"virus,":[75],"SARS-CoV-2":[76],"can":[77],"mutate":[78],"to":[79,90],"high":[81],"degree,":[82],"but":[83],"PLpro":[84],"been":[88],"studied":[89],"date.":[91],"Based":[92],"on":[93,109,115],"sequence":[94],"data":[95],"available":[96],"databases,":[98],"we":[99],"analyzed":[100],"mutational":[102],"protein.":[106],"We":[107],"focused":[108],"effect":[111],"observed":[113],"mutations":[114,131],"inhibitors'":[116],"binding":[117],"mode":[118],"their":[120],"efficacy":[121],"as":[122,124],"well":[123],"protein's":[125],"activity.":[126],"Our":[127],"analysis":[128],"identifies":[129],"five":[130],"should":[133],"be":[134],"monitored":[135],"included":[137],"drug":[140],"design":[141],"process:":[142],"P247S,":[143],"E263D-Y264H":[144],"T265A-Y268C.":[146]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":2}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
