{"id":"https://openalex.org/W4297265059","doi":"https://doi.org/10.1371/journal.pcbi.1010563","title":"Design of immunogens for eliciting antibody responses that may protect against SARS-CoV-2 variants","display_name":"Design of immunogens for eliciting antibody responses that may protect against SARS-CoV-2 variants","publication_year":2022,"publication_date":"2022-09-26","ids":{"openalex":"https://openalex.org/W4297265059","doi":"https://doi.org/10.1371/journal.pcbi.1010563","pmid":"https://pubmed.ncbi.nlm.nih.gov/36156540"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1010563","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010563","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010563&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010563&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069698996","display_name":"Eric Wang","orcid":"https://orcid.org/0000-0003-0330-0597"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric Wang","raw_affiliation_strings":["Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-0330-0597","affiliations":[{"raw_affiliation_string":"Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America","institution_ids":["https://openalex.org/I63966007"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061654582","display_name":"Arup K. Chakraborty","orcid":"https://orcid.org/0000-0003-1268-9602"},"institutions":[{"id":"https://openalex.org/I2802422659","display_name":"Ragon Institute of MGH, MIT and Harvard","ror":"https://ror.org/053r20n13","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I136199984","https://openalex.org/I2802422659","https://openalex.org/I4210087915","https://openalex.org/I48633490","https://openalex.org/I63966007"]},{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Arup K. Chakraborty","raw_affiliation_strings":["Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America","Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America","Department of Physics, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America","Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America","Ragon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology, and Harvard University, Cambridge, Massachusetts, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-1268-9602","affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"Department of Physics, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"Institute for Medical Engineering & Science, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"Ragon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology, and Harvard University, Cambridge, Massachusetts, United States of America","institution_ids":["https://openalex.org/I2802422659"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5061654582"],"corresponding_institution_ids":["https://openalex.org/I2802422659","https://openalex.org/I63966007"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.8075,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.72859111,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"18","issue":"9","first_page":"e1010563","last_page":"e1010563"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10976","display_name":"Viral gastroenteritis research and epidemiology","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11754","display_name":"SARS-CoV-2 detection and testing","score":0.9878000020980835,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.7248818874359131},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.7009648084640503},{"id":"https://openalex.org/keywords/2019-20-coronavirus-outbreak","display_name":"2019-20 coronavirus outbreak","score":0.6266200542449951},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.6056478023529053},{"id":"https://openalex.org/keywords/sars-virus","display_name":"Sars virus","score":0.5640332698822021},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5274874567985535},{"id":"https://openalex.org/keywords/antibody","display_name":"Antibody","score":0.47081905603408813},{"id":"https://openalex.org/keywords/betacoronavirus","display_name":"Betacoronavirus","score":0.4292382597923279},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4145689904689789},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2672094404697418},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2193959653377533},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.11183258891105652}],"concepts":[{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.7248818874359131},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.7009648084640503},{"id":"https://openalex.org/C3006700255","wikidata":"https://www.wikidata.org/wiki/Q81068910","display_name":"2019-20 coronavirus outbreak","level":3,"score":0.6266200542449951},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.6056478023529053},{"id":"https://openalex.org/C3020799909","wikidata":"https://www.wikidata.org/wiki/Q85438966","display_name":"Sars virus","level":5,"score":0.5640332698822021},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5274874567985535},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.47081905603408813},{"id":"https://openalex.org/C2778137277","wikidata":"https://www.wikidata.org/wiki/Q16532287","display_name":"Betacoronavirus","level":5,"score":0.4292382597923279},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4145689904689789},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2672094404697418},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2193959653377533},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.11183258891105652},{"id":"https://openalex.org/C116675565","wikidata":"https://www.wikidata.org/wiki/Q3241045","display_name":"Outbreak","level":2,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000085962","descriptor_name":"Angiotensin-Converting Enzyme 2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000085962","descriptor_name":"Angiotensin-Converting Enzyme 2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000085962","descriptor_name":"Angiotensin-Converting Enzyme 2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000085962","descriptor_name":"Angiotensin-Converting Enzyme 2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000517","qualifier_name":"prevention & control","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086663","descriptor_name":"COVID-19 Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086663","descriptor_name":"COVID-19 Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086663","descriptor_name":"COVID-19 Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086663","descriptor_name":"COVID-19 Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000914","descriptor_name":"Antibodies, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000914","descriptor_name":"Antibodies, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000914","descriptor_name":"Antibodies, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000914","descriptor_name":"Antibodies, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000917","descriptor_name":"Antibody Formation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000917","descriptor_name":"Antibody Formation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000917","descriptor_name":"Antibody Formation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000917","descriptor_name":"Antibody Formation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057134","descriptor_name":"Antibodies, Neutralizing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064370","descriptor_name":"Spike Glycoprotein, Coronavirus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1371/journal.pcbi.1010563","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010563","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010563&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:36156540","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36156540","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:9dc9960b45b5423692cadd769ab44757","is_oa":true,"landing_page_url":"https://doaj.org/article/9dc9960b45b5423692cadd769ab44757","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 9, p e1010563 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9536555","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9536555","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1010563","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1010563","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1010563&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.7200000286102295,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G3260834274","display_name":null,"funder_award_id":"1-R61-AI161805-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6804949641","display_name":null,"funder_award_id":"1745302","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320313818","display_name":"Ragon Institute of MGH, MIT and Harvard","ror":"https://ror.org/053r20n13"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4297265059.pdf","grobid_xml":"https://content.openalex.org/works/W4297265059.grobid-xml"},"referenced_works_count":92,"referenced_works":["https://openalex.org/W1549990382","https://openalex.org/W1562938704","https://openalex.org/W1816587284","https://openalex.org/W1919561613","https://openalex.org/W1954069242","https://openalex.org/W1976609017","https://openalex.org/W1981197474","https://openalex.org/W2006840424","https://openalex.org/W2013557916","https://openalex.org/W2035503835","https://openalex.org/W2049788122","https://openalex.org/W2054069391","https://openalex.org/W2056583190","https://openalex.org/W2063195211","https://openalex.org/W2066211664","https://openalex.org/W2095521702","https://openalex.org/W2101058639","https://openalex.org/W2108020478","https://openalex.org/W2130670576","https://openalex.org/W2131463032","https://openalex.org/W2134250657","https://openalex.org/W2143528254","https://openalex.org/W2160775938","https://openalex.org/W2271840356","https://openalex.org/W2277351499","https://openalex.org/W2515956381","https://openalex.org/W2520562417","https://openalex.org/W2536780048","https://openalex.org/W2753238197","https://openalex.org/W2803694530","https://openalex.org/W2903641700","https://openalex.org/W2924905929","https://openalex.org/W2937011111","https://openalex.org/W2955123934","https://openalex.org/W2995806710","https://openalex.org/W3003257820","https://openalex.org/W3009912996","https://openalex.org/W3012919899","https://openalex.org/W3021283406","https://openalex.org/W3034425436","https://openalex.org/W3035459690","https://openalex.org/W3036386821","https://openalex.org/W3042323010","https://openalex.org/W3047376062","https://openalex.org/W3048714202","https://openalex.org/W3091938242","https://openalex.org/W3092403777","https://openalex.org/W3092608325","https://openalex.org/W3096867322","https://openalex.org/W3101816903","https://openalex.org/W3103021984","https://openalex.org/W3103145119","https://openalex.org/W3104722250","https://openalex.org/W3105688876","https://openalex.org/W3111038302","https://openalex.org/W3126729284","https://openalex.org/W3131995220","https://openalex.org/W3133980772","https://openalex.org/W3136996287","https://openalex.org/W3139161083","https://openalex.org/W3146780841","https://openalex.org/W3149428818","https://openalex.org/W3151076337","https://openalex.org/W3155405767","https://openalex.org/W3157162195","https://openalex.org/W3157646192","https://openalex.org/W3157716983","https://openalex.org/W3160811128","https://openalex.org/W3161487657","https://openalex.org/W3167555428","https://openalex.org/W3172858351","https://openalex.org/W3173204116","https://openalex.org/W3175969873","https://openalex.org/W3179071715","https://openalex.org/W3179259355","https://openalex.org/W3182094313","https://openalex.org/W3182882252","https://openalex.org/W3192545069","https://openalex.org/W3196026921","https://openalex.org/W3198731203","https://openalex.org/W3199394546","https://openalex.org/W3201385894","https://openalex.org/W4205145778","https://openalex.org/W4205412981","https://openalex.org/W4210849337","https://openalex.org/W4210893818","https://openalex.org/W4212883147","https://openalex.org/W4221072241","https://openalex.org/W4225758905","https://openalex.org/W4226076101","https://openalex.org/W4226248580","https://openalex.org/W4246504300"],"related_works":["https://openalex.org/W4205544939","https://openalex.org/W4200000620","https://openalex.org/W3214333824","https://openalex.org/W3095730491","https://openalex.org/W4290085574","https://openalex.org/W3013867929","https://openalex.org/W4285396257","https://openalex.org/W3182721222","https://openalex.org/W3096264172","https://openalex.org/W3133889443"],"abstract_inverted_index":{"The":[0,115],"rise":[1],"of":[2,8,31,36,97,111,123,131,134,152],"SARS-CoV-2":[3,47,138],"variants":[4,139],"and":[5,34,67,82,163],"the":[6,16,51,103,112,124,145,159],"history":[7],"outbreaks":[9],"caused":[10],"by":[11],"zoonotic":[12],"coronaviruses":[13,154],"point":[14],"to":[15,45,63,75,84,101,106,128],"need":[17],"for":[18],"next-generation":[19],"vaccines":[20],"that":[21,55,77,118,136],"confer":[22],"protection":[23],"against":[24],"variant":[25,48],"strains.":[26],"Here,":[27],"we":[28],"combined":[29],"analyses":[30],"diverse":[32],"sequences":[33],"structures":[35],"coronavirus":[37],"spikes":[38],"with":[39,108,120,144],"data":[40],"from":[41,70,155],"deep":[42],"mutational":[43],"scanning":[44],"design":[46],"antigens":[49,79,125],"containing":[50],"most":[52],"significant":[53],"mutations":[54],"may":[56],"emerge.":[57],"We":[58,91],"trained":[59],"a":[60,94,121],"neural":[61],"network":[62],"predict":[64],"RBD":[65],"expression":[66],"ACE2":[68],"binding":[69],"sequence,":[71],"which":[72],"allowed":[73],"us":[74],"determine":[76],"these":[78],"are":[80],"stable":[81],"bind":[83],"ACE2.":[85],"Thus,":[86],"they":[87],"represent":[88],"viable":[89],"variants.":[90],"then":[92],"used":[93],"computational":[95],"model":[96],"affinity":[98],"maturation":[99],"(AM)":[100],"study":[102],"antibody":[104],"response":[105],"immunization":[107,119,141],"different":[109,156],"combinations":[110],"designed":[113],"antigens.":[114],"results":[116],"suggest":[117],"cocktail":[122],"is":[126],"likely":[127],"promote":[129],"evolution":[130],"higher":[132],"titers":[133],"antibodies":[135],"target":[137],"than":[140],"or":[142],"infection":[143],"wildtype":[146],"virus":[147],"alone.":[148],"Finally,":[149],"our":[150],"analysis":[151],"12":[153],"genera":[157],"identified":[158],"S2'":[160],"cleavage":[161],"site":[162],"fusion":[164],"peptide":[165],"as":[166],"potential":[167],"pan-coronavirus":[168],"vaccine":[169],"targets.":[170]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
