{"id":"https://openalex.org/W4207075896","doi":"https://doi.org/10.1371/journal.pcbi.1009777","title":"McComedy: A user-friendly tool for next-generation individual-based modeling of microbial consumer-resource systems","display_name":"McComedy: A user-friendly tool for next-generation individual-based modeling of microbial consumer-resource systems","publication_year":2022,"publication_date":"2022-01-24","ids":{"openalex":"https://openalex.org/W4207075896","doi":"https://doi.org/10.1371/journal.pcbi.1009777","pmid":"https://pubmed.ncbi.nlm.nih.gov/35073313"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1009777","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009777","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009777&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009777&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036345692","display_name":"Andr\u00e9 Bogdanowski","orcid":"https://orcid.org/0000-0002-9634-7054"},"institutions":[{"id":"https://openalex.org/I137479271","display_name":"Helmholtz Centre for Environmental Research","ror":"https://ror.org/000h6jb29","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I137479271"]},{"id":"https://openalex.org/I170658231","display_name":"Osnabr\u00fcck University","ror":"https://ror.org/04qmmjx98","country_code":"DE","type":"education","lineage":["https://openalex.org/I170658231"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andr\u00e9 Bogdanowski","raw_affiliation_strings":["Helmholtz-Centre for Environmental Research - UFZ, Department of Ecological Modelling, Leipzig, Germany","Osnabr\u00fcck University, Department of Ecology, School of Biology/Chemistry, Osnabr\u00fcck, Germany","Helmholtz-Centre for Environmental Research \u2013 UFZ, Department of Ecological Modelling, Leipzig, Germany"],"raw_orcid":"https://orcid.org/0000-0002-9634-7054","affiliations":[{"raw_affiliation_string":"Helmholtz-Centre for Environmental Research - UFZ, Department of Ecological Modelling, Leipzig, Germany","institution_ids":["https://openalex.org/I137479271"]},{"raw_affiliation_string":"Osnabr\u00fcck University, Department of Ecology, School of Biology/Chemistry, Osnabr\u00fcck, Germany","institution_ids":["https://openalex.org/I170658231"]},{"raw_affiliation_string":"Helmholtz-Centre for Environmental Research \u2013 UFZ, Department of Ecological Modelling, Leipzig, Germany","institution_ids":["https://openalex.org/I137479271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023902697","display_name":"Thomas Banitz","orcid":"https://orcid.org/0000-0001-8541-789X"},"institutions":[{"id":"https://openalex.org/I137479271","display_name":"Helmholtz Centre for Environmental Research","ror":"https://ror.org/000h6jb29","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I137479271"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thomas Banitz","raw_affiliation_strings":["Helmholtz-Centre for Environmental Research - UFZ, Department of Ecological Modelling, Leipzig, Germany","Helmholtz-Centre for Environmental Research \u2013 UFZ, Department of Ecological Modelling, Leipzig, Germany"],"raw_orcid":"https://orcid.org/0000-0001-8541-789X","affiliations":[{"raw_affiliation_string":"Helmholtz-Centre for Environmental Research - UFZ, Department of Ecological Modelling, Leipzig, Germany","institution_ids":["https://openalex.org/I137479271"]},{"raw_affiliation_string":"Helmholtz-Centre for Environmental Research \u2013 UFZ, Department of Ecological Modelling, Leipzig, Germany","institution_ids":["https://openalex.org/I137479271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031866261","display_name":"Linea Katharina Muhsal","orcid":"https://orcid.org/0000-0001-8269-260X"},"institutions":[{"id":"https://openalex.org/I170658231","display_name":"Osnabr\u00fcck University","ror":"https://ror.org/04qmmjx98","country_code":"DE","type":"education","lineage":["https://openalex.org/I170658231"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Linea Katharina Muhsal","raw_affiliation_strings":["Osnabr\u00fcck University, Department of Ecology, School of Biology/Chemistry, Osnabr\u00fcck, Germany"],"raw_orcid":"https://orcid.org/0000-0001-8269-260X","affiliations":[{"raw_affiliation_string":"Osnabr\u00fcck University, Department of Ecology, School of Biology/Chemistry, Osnabr\u00fcck, Germany","institution_ids":["https://openalex.org/I170658231"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003139722","display_name":"Christian Kost","orcid":"https://orcid.org/0000-0002-7870-7343"},"institutions":[{"id":"https://openalex.org/I170658231","display_name":"Osnabr\u00fcck University","ror":"https://ror.org/04qmmjx98","country_code":"DE","type":"education","lineage":["https://openalex.org/I170658231"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christian Kost","raw_affiliation_strings":["Osnabr\u00fcck University, Department of Ecology, School of Biology/Chemistry, Osnabr\u00fcck, Germany"],"raw_orcid":"https://orcid.org/0000-0002-7870-7343","affiliations":[{"raw_affiliation_string":"Osnabr\u00fcck University, Department of Ecology, School of Biology/Chemistry, Osnabr\u00fcck, Germany","institution_ids":["https://openalex.org/I170658231"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020090734","display_name":"Karin Frank","orcid":"https://orcid.org/0000-0002-2769-0692"},"institutions":[{"id":"https://openalex.org/I137479271","display_name":"Helmholtz Centre for Environmental Research","ror":"https://ror.org/000h6jb29","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I137479271"]},{"id":"https://openalex.org/I170658231","display_name":"Osnabr\u00fcck University","ror":"https://ror.org/04qmmjx98","country_code":"DE","type":"education","lineage":["https://openalex.org/I170658231"]},{"id":"https://openalex.org/I2801030728","display_name":"German Centre for Integrative Biodiversity Research","ror":"https://ror.org/01jty7g66","country_code":"DE","type":"facility","lineage":["https://openalex.org/I2801030728"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Karin Frank","raw_affiliation_strings":["Helmholtz-Centre for Environmental Research - UFZ, Department of Ecological Modelling, Leipzig, Germany","Osnabr\u00fcck University, Institute for Environmental Systems Research, Osnabr\u00fcck, Germany","iDiv - German Centre for Integrative Biodiversity Research, Halle-Jena-Leipzig, Germany","Helmholtz-Centre for Environmental Research \u2013 UFZ, Department of Ecological Modelling, Leipzig, Germany","iDiv \u2013 German Centre for Integrative Biodiversity Research, Halle-Jena-Leipzig, Germany"],"raw_orcid":"https://orcid.org/0000-0002-2769-0692","affiliations":[{"raw_affiliation_string":"Helmholtz-Centre for Environmental Research - UFZ, Department of Ecological Modelling, Leipzig, Germany","institution_ids":["https://openalex.org/I137479271"]},{"raw_affiliation_string":"Osnabr\u00fcck University, Institute for Environmental Systems Research, Osnabr\u00fcck, Germany","institution_ids":["https://openalex.org/I170658231"]},{"raw_affiliation_string":"iDiv - German Centre for Integrative Biodiversity Research, Halle-Jena-Leipzig, Germany","institution_ids":["https://openalex.org/I2801030728"]},{"raw_affiliation_string":"Helmholtz-Centre for Environmental Research \u2013 UFZ, Department of Ecological Modelling, Leipzig, Germany","institution_ids":["https://openalex.org/I137479271"]},{"raw_affiliation_string":"iDiv \u2013 German Centre for Integrative Biodiversity Research, Halle-Jena-Leipzig, Germany","institution_ids":["https://openalex.org/I2801030728"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5020090734"],"corresponding_institution_ids":["https://openalex.org/I137479271","https://openalex.org/I170658231","https://openalex.org/I2801030728"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2459,"currency":"EUR","value_usd":2652},"fwci":0.5208,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.6021837,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"18","issue":"1","first_page":"e1009777","last_page":"e1009777"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.982699990272522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.982699990272522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11252","display_name":"Evolutionary Game Theory and Cooperation","score":0.9663000106811523,"subfield":{"id":"https://openalex.org/subfields/3312","display_name":"Sociology and Political Science"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9484999775886536,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7193689942359924},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.6007710695266724},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4817047715187073},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4787139892578125},{"id":"https://openalex.org/keywords/system-dynamics","display_name":"System dynamics","score":0.46119973063468933},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.46020764112472534},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4562462866306305},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.3842594027519226},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.368524432182312},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.35123327374458313},{"id":"https://openalex.org/keywords/management-science","display_name":"Management science","score":0.3206592798233032},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.14602455496788025},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09778252243995667}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7193689942359924},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.6007710695266724},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4817047715187073},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4787139892578125},{"id":"https://openalex.org/C77405623","wikidata":"https://www.wikidata.org/wiki/Q598451","display_name":"System dynamics","level":2,"score":0.46119973063468933},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.46020764112472534},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4562462866306305},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.3842594027519226},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.368524432182312},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.35123327374458313},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.3206592798233032},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.14602455496788025},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09778252243995667},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1371/journal.pcbi.1009777","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009777","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009777&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:35073313","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35073313","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:915fceea3e2b4646a803b4f76a10291d","is_oa":true,"landing_page_url":"https://doaj.org/article/915fceea3e2b4646a803b4f76a10291d","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 18, Iss 1, p e1009777 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8830788","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8830788","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1009777","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1009777","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1009777&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1475275961","display_name":null,"funder_award_id":"KO 3909/4-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6961197848","display_name":null,"funder_award_id":"SFB 944, P19","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G7411993665","display_name":null,"funder_award_id":"SFB 944","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8205879462","display_name":null,"funder_award_id":"KO 3909/2-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8785008935","display_name":null,"funder_award_id":"SFB 944, P19, KO 3909/2-1, KO 3909/4-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4207075896.pdf","grobid_xml":"https://content.openalex.org/works/W4207075896.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W560246346","https://openalex.org/W1486087545","https://openalex.org/W1921951426","https://openalex.org/W1966532532","https://openalex.org/W1984320817","https://openalex.org/W2006012747","https://openalex.org/W2018672567","https://openalex.org/W2026572668","https://openalex.org/W2040539560","https://openalex.org/W2077801381","https://openalex.org/W2083717261","https://openalex.org/W2092512759","https://openalex.org/W2098919112","https://openalex.org/W2110740943","https://openalex.org/W2113787438","https://openalex.org/W2117899937","https://openalex.org/W2122093325","https://openalex.org/W2136004458","https://openalex.org/W2144683622","https://openalex.org/W2145408484","https://openalex.org/W2146969372","https://openalex.org/W2160135160","https://openalex.org/W2162204164","https://openalex.org/W2164683004","https://openalex.org/W2235421838","https://openalex.org/W2267159845","https://openalex.org/W2295190630","https://openalex.org/W2330334813","https://openalex.org/W2434315415","https://openalex.org/W2551807317","https://openalex.org/W2611923886","https://openalex.org/W2614283331","https://openalex.org/W2617261748","https://openalex.org/W2804100011","https://openalex.org/W2903216094","https://openalex.org/W2938825033","https://openalex.org/W2949644321","https://openalex.org/W2951033555","https://openalex.org/W2952982270","https://openalex.org/W2996352770","https://openalex.org/W3014128467","https://openalex.org/W3021904993","https://openalex.org/W3104770657","https://openalex.org/W3155064590","https://openalex.org/W4254687493"],"related_works":["https://openalex.org/W2013387899","https://openalex.org/W2100279467","https://openalex.org/W2765396887","https://openalex.org/W4313418547","https://openalex.org/W2169202491","https://openalex.org/W2128187209","https://openalex.org/W2739511251","https://openalex.org/W4377982295","https://openalex.org/W2275027362","https://openalex.org/W2061544835"],"abstract_inverted_index":{"Individual-based":[0],"modeling":[1,109],"is":[2,82,151],"widely":[3],"applied":[4],"to":[5,35,62,112,142,158],"investigate":[6],"the":[7,17,24,42,46,58,114,144,159,166],"ecological":[8,75],"mechanisms":[9],"driving":[10],"microbial":[11,121,148,186],"community":[12,20],"dynamics.":[13,76],"In":[14],"such":[15,80],"models,":[16],"population":[18],"or":[19,89],"dynamics":[21,146],"emerge":[22],"from":[23,165],"behavior":[25,47],"and":[26,54,84,135,155,191],"interplay":[27],"of":[28,39,48,79,100,116,120,140,147,161,185],"individual":[29],"entities,":[30],"which":[31,94],"are":[32,50,60],"simulated":[33],"according":[34],"a":[36,97,108,173],"predefined":[37],"set":[38],"rules.":[40],"If":[41],"rules":[43],"that":[44,132,181],"govern":[45],"individuals":[49],"based":[51],"on":[52],"generic":[53],"mechanistically":[55],"sound":[56],"principles,":[57],"models":[59,68,81,119,180],"referred":[61],"as":[63],"next-generation":[64,117,178],"individual-based":[65,118,179],"models.":[66],"These":[67],"perform":[69],"particularly":[70],"well":[71],"in":[72,87,90,188],"recapitulating":[73],"actual":[74],"However,":[77],"implementation":[78],"time-consuming":[83],"requires":[85],"proficiency":[86],"programming":[88],"using":[91],"specific":[92],"software,":[93],"likely":[95],"hinders":[96],"broader":[98],"application":[99],"this":[101,169],"powerful":[102],"method.":[103],"Here":[104],"we":[105,171],"present":[106],"McComedy,":[107],"tool":[110,125,175],"designed":[111],"facilitate":[113],"development":[115],"consumer-resource":[122,149],"systems.":[123],"This":[124],"allows":[126],"flexibly":[127],"combining":[128],"pre-implemented":[129],"building":[130],"blocks":[131],"represent":[133],"physical":[134],"biological":[136],"processes.":[137],"The":[138],"ability":[139],"McComedy":[141],"capture":[143],"essential":[145],"systems":[150],"demonstrated":[152],"by":[153],"reproducing":[154],"furthermore":[156],"adding":[157],"results":[160],"two":[162],"distinct":[163],"studies":[164],"literature.":[167],"With":[168],"article,":[170],"provide":[172],"versatile":[174],"for":[176],"developing":[177],"can":[182],"foster":[183],"understanding":[184],"ecology":[187],"both":[189],"research":[190],"education.":[192]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
