{"id":"https://openalex.org/W3130912132","doi":"https://doi.org/10.1371/journal.pcbi.1008640","title":"Using a multiple-delivery-mode training approach to develop local capacity and infrastructure for advanced bioinformatics in Africa","display_name":"Using a multiple-delivery-mode training approach to develop local capacity and infrastructure for advanced bioinformatics in Africa","publication_year":2021,"publication_date":"2021-02-25","ids":{"openalex":"https://openalex.org/W3130912132","doi":"https://doi.org/10.1371/journal.pcbi.1008640","mag":"3130912132","pmid":"https://pubmed.ncbi.nlm.nih.gov/33630830"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1008640","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008640","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008640&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008640&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085804848","display_name":"Verena Ras","orcid":"https://orcid.org/0000-0003-3938-7241"},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]},{"id":"https://openalex.org/I4210138455","display_name":"Wellcome Centre for Infectious Diseases Research in Africa","ror":"https://ror.org/040b19m18","country_code":"ZA","type":"facility","lineage":["https://openalex.org/I157614274","https://openalex.org/I4210138455","https://openalex.org/I87048295"]},{"id":"https://openalex.org/I869660684","display_name":"University of the Western Cape","ror":"https://ror.org/00h2vm590","country_code":"ZA","type":"education","lineage":["https://openalex.org/I869660684"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Verena Ras","raw_affiliation_strings":["Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, CIDRI Africa Wellcome Trust Centre, University of Cape Town, Cape Town, South Africa","Department of Biodiversity and Conservation Biology, University of the Western Cape, Bellville, South Africa"],"affiliations":[{"raw_affiliation_string":"Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, CIDRI Africa Wellcome Trust Centre, University of Cape Town, Cape Town, South Africa","institution_ids":["https://openalex.org/I4210138455","https://openalex.org/I157614274"]},{"raw_affiliation_string":"Department of Biodiversity and Conservation Biology, University of the Western Cape, Bellville, South Africa","institution_ids":["https://openalex.org/I869660684"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007711928","display_name":"Gerrit Botha","orcid":"https://orcid.org/0000-0001-7499-3760"},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]},{"id":"https://openalex.org/I4210138455","display_name":"Wellcome Centre for Infectious Diseases Research in Africa","ror":"https://ror.org/040b19m18","country_code":"ZA","type":"facility","lineage":["https://openalex.org/I157614274","https://openalex.org/I4210138455","https://openalex.org/I87048295"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Gerrit Botha","raw_affiliation_strings":["Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, CIDRI Africa Wellcome Trust Centre, University of Cape Town, Cape Town, South Africa"],"affiliations":[{"raw_affiliation_string":"Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, CIDRI Africa Wellcome Trust Centre, University of Cape Town, Cape Town, South Africa","institution_ids":["https://openalex.org/I4210138455","https://openalex.org/I157614274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079517255","display_name":"Shaun Aron","orcid":"https://orcid.org/0000-0001-6200-0485"},"institutions":[{"id":"https://openalex.org/I192619145","display_name":"University of the Witwatersrand","ror":"https://ror.org/03rp50x72","country_code":"ZA","type":"education","lineage":["https://openalex.org/I192619145"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Shaun Aron","raw_affiliation_strings":["Sydney Brenner Institute for Molecular Bioscience, University of the Witwatersrand, Johannesburg, South Africa"],"affiliations":[{"raw_affiliation_string":"Sydney Brenner Institute for Molecular Bioscience, University of the Witwatersrand, Johannesburg, South Africa","institution_ids":["https://openalex.org/I192619145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053641415","display_name":"Katie Lennard","orcid":"https://orcid.org/0000-0002-7801-1063"},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]},{"id":"https://openalex.org/I4210138455","display_name":"Wellcome Centre for Infectious Diseases Research in Africa","ror":"https://ror.org/040b19m18","country_code":"ZA","type":"facility","lineage":["https://openalex.org/I157614274","https://openalex.org/I4210138455","https://openalex.org/I87048295"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Katie Lennard","raw_affiliation_strings":["Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, CIDRI Africa Wellcome Trust Centre, University of Cape Town, Cape Town, South Africa"],"affiliations":[{"raw_affiliation_string":"Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, CIDRI Africa Wellcome Trust Centre, University of Cape Town, Cape Town, South Africa","institution_ids":["https://openalex.org/I4210138455","https://openalex.org/I157614274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034626732","display_name":"Imane Allali","orcid":"https://orcid.org/0000-0002-7662-5643"},"institutions":[{"id":"https://openalex.org/I126477371","display_name":"Mohammed V University","ror":"https://ror.org/00r8w8f84","country_code":"MA","type":"education","lineage":["https://openalex.org/I126477371"]},{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]},{"id":"https://openalex.org/I4210138455","display_name":"Wellcome Centre for Infectious Diseases Research in Africa","ror":"https://ror.org/040b19m18","country_code":"ZA","type":"facility","lineage":["https://openalex.org/I157614274","https://openalex.org/I4210138455","https://openalex.org/I87048295"]}],"countries":["MA","ZA"],"is_corresponding":false,"raw_author_name":"Imane Allali","raw_affiliation_strings":["Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, CIDRI Africa Wellcome Trust Centre, University of Cape Town, Cape Town, South Africa","Laboratory of Human Pathologies Biology, Department of Biology, Faculty of Sciences, and Genomic Center of Human Pathologies, Faculty of Medicine and Pharmacy, Mohammed V University in Rabat, Rabat, Morocco"],"affiliations":[{"raw_affiliation_string":"Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, CIDRI Africa Wellcome Trust Centre, University of Cape Town, Cape Town, South Africa","institution_ids":["https://openalex.org/I4210138455","https://openalex.org/I157614274"]},{"raw_affiliation_string":"Laboratory of Human Pathologies Biology, Department of Biology, Faculty of Sciences, and Genomic Center of Human Pathologies, Faculty of Medicine and Pharmacy, Mohammed V University in Rabat, Rabat, Morocco","institution_ids":["https://openalex.org/I126477371"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023932774","display_name":"Shantelle Claassen-Weitz","orcid":"https://orcid.org/0000-0003-2175-3776"},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Shantelle Claassen-Weitz","raw_affiliation_strings":["Division of Medical Microbiology, Department of Pathology, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa"],"affiliations":[{"raw_affiliation_string":"Division of Medical Microbiology, Department of Pathology, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa","institution_ids":["https://openalex.org/I157614274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043436974","display_name":"Kilaza Samson Mwaikono","orcid":"https://orcid.org/0000-0002-3598-7576"},"institutions":[{"id":"https://openalex.org/I195608997","display_name":"Dar es Salaam Institute of Technology","ror":"https://ror.org/038c55s31","country_code":"TZ","type":"education","lineage":["https://openalex.org/I195608997"]}],"countries":["TZ"],"is_corresponding":false,"raw_author_name":"Kilaza Samson Mwaikono","raw_affiliation_strings":["Department of Science and Laboratory Technology, Dar es Salaam Institute of Technology, Dar es Salaam, Tanzania"],"affiliations":[{"raw_affiliation_string":"Department of Science and Laboratory Technology, Dar es Salaam Institute of Technology, Dar es Salaam, Tanzania","institution_ids":["https://openalex.org/I195608997"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020425843","display_name":"Dane Kennedy","orcid":"https://orcid.org/0000-0002-3005-9818"},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]},{"id":"https://openalex.org/I4390039249","display_name":"Inter-university Institute for Data Intensive Astronomy","ror":"https://ror.org/01edhwb26","country_code":null,"type":"facility","lineage":["https://openalex.org/I157614274","https://openalex.org/I4390039249","https://openalex.org/I69552723","https://openalex.org/I869660684"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Dane Kennedy","raw_affiliation_strings":["The Inter-University Institute for Data Intensive Astronomy (IDIA), Department of Astronomy, University of Cape Town, Cape Town, South Africa"],"affiliations":[{"raw_affiliation_string":"The Inter-University Institute for Data Intensive Astronomy (IDIA), Department of Astronomy, University of Cape Town, Cape Town, South Africa","institution_ids":["https://openalex.org/I157614274","https://openalex.org/I4390039249"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001770685","display_name":"Jessica R. Holmes","orcid":"https://orcid.org/0000-0002-3506-4405"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jessica R. Holmes","raw_affiliation_strings":["High Performance Computing in Biology, Roy J. Carver Biotechnology Center, University of Illinois Urbana-Champaign, Urbana and Champaign, Illinois, United States of America"],"affiliations":[{"raw_affiliation_string":"High Performance Computing in Biology, Roy J. Carver Biotechnology Center, University of Illinois Urbana-Champaign, Urbana and Champaign, Illinois, United States of America","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014574127","display_name":"Gloria Rendon","orcid":null},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gloria Rendon","raw_affiliation_strings":["High Performance Computing in Biology, Roy J. Carver Biotechnology Center, University of Illinois Urbana-Champaign, Urbana and Champaign, Illinois, United States of America"],"affiliations":[{"raw_affiliation_string":"High Performance Computing in Biology, Roy J. Carver Biotechnology Center, University of Illinois Urbana-Champaign, Urbana and Champaign, Illinois, United States of America","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017042855","display_name":"Sumir Panji","orcid":"https://orcid.org/0000-0003-0447-0598"},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]},{"id":"https://openalex.org/I4210138455","display_name":"Wellcome Centre for Infectious Diseases Research in Africa","ror":"https://ror.org/040b19m18","country_code":"ZA","type":"facility","lineage":["https://openalex.org/I157614274","https://openalex.org/I4210138455","https://openalex.org/I87048295"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Sumir Panji","raw_affiliation_strings":["Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, CIDRI Africa Wellcome Trust Centre, University of Cape Town, Cape Town, South Africa"],"affiliations":[{"raw_affiliation_string":"Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, CIDRI Africa Wellcome Trust Centre, University of Cape Town, Cape Town, South Africa","institution_ids":["https://openalex.org/I4210138455","https://openalex.org/I157614274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105406899","display_name":"Christopher J. Fields","orcid":"https://orcid.org/0000-0002-7749-5844"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher J Fields","raw_affiliation_strings":["High Performance Computing in Biology, Roy J. Carver Biotechnology Center, University of Illinois Urbana-Champaign, Urbana and Champaign, Illinois, United States of America"],"affiliations":[{"raw_affiliation_string":"High Performance Computing in Biology, Roy J. Carver Biotechnology Center, University of Illinois Urbana-Champaign, Urbana and Champaign, Illinois, United States of America","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080377820","display_name":"Nicola Mulder","orcid":"https://orcid.org/0000-0003-4905-0941"},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]},{"id":"https://openalex.org/I4210138455","display_name":"Wellcome Centre for Infectious Diseases Research in Africa","ror":"https://ror.org/040b19m18","country_code":"ZA","type":"facility","lineage":["https://openalex.org/I157614274","https://openalex.org/I4210138455","https://openalex.org/I87048295"]}],"countries":["ZA"],"is_corresponding":true,"raw_author_name":"Nicola Mulder","raw_affiliation_strings":["Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, CIDRI Africa Wellcome Trust Centre, University of Cape Town, Cape Town, South Africa"],"affiliations":[{"raw_affiliation_string":"Computational Biology Division, Department of Integrative Biomedical Sciences, IDM, CIDRI Africa Wellcome Trust Centre, University of Cape Town, Cape Town, South Africa","institution_ids":["https://openalex.org/I4210138455","https://openalex.org/I157614274"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5080377820"],"corresponding_institution_ids":["https://openalex.org/I157614274","https://openalex.org/I4210138455"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":2.0333,"has_fulltext":true,"cited_by_count":33,"citation_normalized_percentile":{"value":0.87319785,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"17","issue":"2","first_page":"e1008640","last_page":"e1008640"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.979200005531311,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9577999711036682,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7816903591156006},{"id":"https://openalex.org/keywords/software-deployment","display_name":"Software deployment","score":0.667683482170105},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5592637062072754},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.5337831377983093},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5322389602661133},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4815512001514435},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4602983593940735},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3437921404838562},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3096386194229126},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.24605128169059753},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1302364468574524},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1293146312236786},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.09948647022247314}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7816903591156006},{"id":"https://openalex.org/C105339364","wikidata":"https://www.wikidata.org/wiki/Q2297740","display_name":"Software deployment","level":2,"score":0.667683482170105},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5592637062072754},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.5337831377983093},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5322389602661133},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4815512001514435},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4602983593940735},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3437921404838562},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3096386194229126},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.24605128169059753},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1302364468574524},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1293146312236786},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.09948647022247314},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000349","descriptor_name":"Africa","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000349","descriptor_name":"Africa","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000349","descriptor_name":"Africa","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003479","descriptor_name":"Curriculum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003479","descriptor_name":"Curriculum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003479","descriptor_name":"Curriculum","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005843","descriptor_name":"Geography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005843","descriptor_name":"Geography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005843","descriptor_name":"Geography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000193","qualifier_name":"education","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1008640","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008640","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008640&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:33630830","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33630830","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:9bacf3fec9e341ab96d9da36cfaa71d4","is_oa":true,"landing_page_url":"https://doaj.org/article/9bacf3fec9e341ab96d9da36cfaa71d4","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 17, Iss 2, p e1008640 (2021)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7906323","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7906323","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:repository.uwc.ac.za:10566/6166","is_oa":false,"landing_page_url":"http://hdl.handle.net/10566/6166","pdf_url":null,"source":{"id":"https://openalex.org/S4306400180","display_name":"UWC Research Repository (University of the Western Cape)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I869660684","host_organization_name":"University of the Western Cape","host_organization_lineage":["https://openalex.org/I869660684"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1008640","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1008640","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008640&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.6200000047683716}],"awards":[{"id":"https://openalex.org/G2421928897","display_name":null,"funder_award_id":"U24HG006941.","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G3390179822","display_name":null,"funder_award_id":"U24HG006941","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G4219278813","display_name":null,"funder_award_id":"U24HG006941","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320321970","display_name":"University of the Western Cape","ror":"https://ror.org/00h2vm590"},{"id":"https://openalex.org/F4320322696","display_name":"Cape Peninsula University of Technology","ror":"https://ror.org/056e9h402"},{"id":"https://openalex.org/F4320324164","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3130912132.pdf","grobid_xml":"https://content.openalex.org/works/W3130912132.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W2088662543","https://openalex.org/W2098571599","https://openalex.org/W2130731460","https://openalex.org/W2165889944","https://openalex.org/W2188414616","https://openalex.org/W2229212657","https://openalex.org/W2401404581","https://openalex.org/W2406445961","https://openalex.org/W2432815617","https://openalex.org/W2762107751","https://openalex.org/W2788436468","https://openalex.org/W2883251903","https://openalex.org/W2902201297","https://openalex.org/W3004235062","https://openalex.org/W3006653136","https://openalex.org/W6689497340"],"related_works":["https://openalex.org/W2770234245","https://openalex.org/W96612179","https://openalex.org/W4229499248","https://openalex.org/W2566006169","https://openalex.org/W1567818861","https://openalex.org/W2987774938","https://openalex.org/W4256492088","https://openalex.org/W632915154","https://openalex.org/W2055733372","https://openalex.org/W3022067003"],"abstract_inverted_index":{"With":[0],"more":[1,142],"microbiome":[2,25,85],"studies":[3,26],"being":[4],"conducted":[5],"by":[6,36,105,178,226],"African-based":[7],"research":[8,234],"groups,":[9],"there":[10],"is":[11],"an":[12],"increasing":[13,229],"demand":[14],"for":[15,152,232,240],"knowledge":[16],"and":[17,22,27,46,59,88,107,148,158,164,188,197,224,247,260,264],"skills":[18],"in":[19,38,131,137],"the":[20,115,161,173,176,184,212],"design":[21],"analysis":[23],"of":[24,48,55,98,117,160,175,186],"data.":[28,208],"However,":[29],"high-quality":[30],"bioinformatics":[31,49,243],"courses":[32,244],"are":[33],"often":[34],"impeded":[35],"differences":[37],"computational":[39,57],"environments,":[40],"complicated":[41],"software":[42,121],"stacks,":[43],"numerous":[44],"dependencies,":[45],"versions":[47],"tools":[50],"along":[51],"with":[52,141],"a":[53,66,118,195,238],"lack":[54],"local":[56,220,230],"infrastructure":[58],"expertise.":[60],"To":[61],"address":[62],"this,":[63],"H3ABioNet":[64],"developed":[65,82],"16S":[67],"rRNA":[68],"Microbiome":[69],"Intermediate":[70],"Bioinformatics":[71],"Training":[72],"course,":[73],"extending":[74],"its":[75],"remote":[76],"classroom":[77],"model.":[78],"The":[79,127,155,181],"course":[80,177],"was":[81],"alongside":[83],"experienced":[84,227],"researchers,":[86],"bioinformaticians,":[87],"systems":[89],"administrators,":[90],"who":[91],"identified":[92],"key":[93],"topics":[94],"to":[95,113,172,214,262],"address.":[96],"Development":[97],"containerised":[99],"workflows":[100],"has":[101],"previously":[102],"been":[103],"undertaken":[104],"H3ABioNet,":[106],"Singularity":[108],"containers":[109,182],"were":[110,169,222],"used":[111],"here":[112],"enable":[114],"deployment":[116],"standard":[119],"replicable":[120],"stack":[122],"across":[123,133,190,245],"different":[124],"hosting":[125,179],"sites.":[126],"pilot":[128],"ran":[129],"successfully":[130],"2019":[132],"23":[134],"sites":[135],"registered":[136],"11":[138],"African":[139],"countries,":[140],"than":[143],"200":[144],"participants":[145],"formally":[146],"enrolled":[147],"106":[149],"volunteer":[150],"staff":[151,221],"onsite":[153],"support.":[154,235],"pulling,":[156],"running,":[157],"testing":[159],"containers,":[162],"software,":[163],"analyses":[165,187,202],"on":[166,206],"various":[167],"clusters":[168],"performed":[170],"prior":[171],"start":[174],"classrooms.":[180],"allowed":[183],"replication":[185],"results":[189],"all":[191],"participating":[192],"classrooms":[193],"running":[194],"cluster":[196],"remained":[198],"available":[199],"posttraining":[200],"ensuring":[201],"could":[203],"be":[204],"repeated":[205],"real":[207],"Participants":[209],"thus":[210],"received":[211],"opportunity":[213],"analyse":[215],"their":[216],"own":[217],"data,":[218],"while":[219],"trained":[223],"supported":[225],"experts,":[228],"capacity":[231],"ongoing":[233],"This":[236],"provides":[237],"model":[239],"delivering":[241],"topic-specific":[242],"Africa":[246],"other":[248],"remote/low-resourced":[249],"regions":[250],"which":[251],"overcomes":[252],"barriers":[253],"such":[254],"as":[255],"inadequate":[256],"infrastructures,":[257],"geographical":[258],"distance,":[259],"access":[261],"expertise":[263],"educational":[265],"materials.":[266]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":17},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}