{"id":"https://openalex.org/W3029757120","doi":"https://doi.org/10.1371/journal.pcbi.1007917","title":"Compositional Lotka-Volterra describes microbial dynamics in the simplex","display_name":"Compositional Lotka-Volterra describes microbial dynamics in the simplex","publication_year":2020,"publication_date":"2020-05-29","ids":{"openalex":"https://openalex.org/W3029757120","doi":"https://doi.org/10.1371/journal.pcbi.1007917","mag":"3029757120","pmid":"https://pubmed.ncbi.nlm.nih.gov/32469867"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1007917","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007917","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1007917","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000417492","display_name":"Tyler Joseph","orcid":"https://orcid.org/0000-0001-6013-7285"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Tyler A. Joseph","raw_affiliation_strings":["Department of Computer Science, Columbia University, New York, New York, United States of America"],"raw_orcid":"https://orcid.org/0000-0001-6013-7285","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Columbia University, New York, New York, United States of America","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051290724","display_name":"Liat Shenhav","orcid":"https://orcid.org/0000-0003-1708-6050"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Liat Shenhav","raw_affiliation_strings":["Department of Computer Science, UCLA, Los Angeles, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-1708-6050","affiliations":[{"raw_affiliation_string":"Department of Computer Science, UCLA, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028819015","display_name":"Jo\u00e3o B. Xavier","orcid":"https://orcid.org/0000-0003-3592-1689"},"institutions":[{"id":"https://openalex.org/I1334819555","display_name":"Memorial Sloan Kettering Cancer Center","ror":"https://ror.org/02yrq0923","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1334819555"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Joao B. Xavier","raw_affiliation_strings":["Memorial Sloan Kettering Cancer Center, New York, New York, United States of America"],"raw_orcid":"https://orcid.org/0000-0003-3592-1689","affiliations":[{"raw_affiliation_string":"Memorial Sloan Kettering Cancer Center, New York, New York, United States of America","institution_ids":["https://openalex.org/I1334819555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050273239","display_name":"Eran Halperin","orcid":"https://orcid.org/0000-0002-2373-3691"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]},{"id":"https://openalex.org/I4210151738","display_name":"Precision Research (United States)","ror":"https://ror.org/04y784b90","country_code":"US","type":"company","lineage":["https://openalex.org/I4210151738"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Eran Halperin","raw_affiliation_strings":["Department of Anesthesiology and Perioperative Medicine, University of California Los Angeles, Los Angeles, California, United States of America","Department of Computational Medicine, UCLA, Los Angeles, California, United States of America","Department of Computer Science, UCLA, Los Angeles, California, United States of America","Department of Human Genetics, University of California Los Angeles, Los Angeles, California, United States of America","Institute of Precision Health, UCLA, Los Angeles, California, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-2373-3691","affiliations":[{"raw_affiliation_string":"Department of Anesthesiology and Perioperative Medicine, University of California Los Angeles, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Computational Medicine, UCLA, Los Angeles, California, United States of America","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, UCLA, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Human Genetics, University of California Los Angeles, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Institute of Precision Health, UCLA, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I4210151738"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008985951","display_name":"Itsik Pe\u2019er","orcid":"https://orcid.org/0000-0002-6128-7231"},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Itsik Pe\u2019er","raw_affiliation_strings":["Department of Computer Science, Columbia University, New York, New York, United States of America","Department of Systems Biology, Columbia University, New York, New York, United States of America","Data Science Institute, Columbia University, New York, New York, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-6128-7231","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Columbia University, New York, New York, United States of America","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Department of Systems Biology, Columbia University, New York, New York, United States of America","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Data Science Institute, Columbia University, New York, New York, United States of America","institution_ids":["https://openalex.org/I78577930"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5000417492","https://openalex.org/A5008985951","https://openalex.org/A5028819015","https://openalex.org/A5050273239","https://openalex.org/A5051290724"],"corresponding_institution_ids":["https://openalex.org/I1334819555","https://openalex.org/I161318765","https://openalex.org/I4210151738","https://openalex.org/I78577930"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":5.9793,"has_fulltext":false,"cited_by_count":70,"citation_normalized_percentile":{"value":0.96918429,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"16","issue":"5","first_page":"e1007917","last_page":"e1007917"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12157","display_name":"Geochemistry and Geologic Mapping","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12157","display_name":"Geochemistry and Geologic Mapping","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12492","display_name":"Zoonotic diseases and public health","score":0.9474999904632568,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12232","display_name":"Yersinia bacterium, plague, ectoparasites research","score":0.9470999836921692,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/relative-species-abundance","display_name":"Relative species abundance","score":0.8419781923294067},{"id":"https://openalex.org/keywords/simplex","display_name":"Simplex","score":0.5798869729042053},{"id":"https://openalex.org/keywords/abundance","display_name":"Abundance (ecology)","score":0.5500791668891907},{"id":"https://openalex.org/keywords/nonlinear-system","display_name":"Nonlinear system","score":0.525698184967041},{"id":"https://openalex.org/keywords/microbial-population-biology","display_name":"Microbial population biology","score":0.5172699093818665},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.4663291275501251},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.445246160030365},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.4357847571372986},{"id":"https://openalex.org/keywords/theoretical-ecology","display_name":"Theoretical ecology","score":0.41186514496803284},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4037250280380249},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3917481303215027},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3518095910549164},{"id":"https://openalex.org/keywords/econometrics","display_name":"Econometrics","score":0.33568233251571655},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2770657539367676},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.24384599924087524},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.08322739601135254}],"concepts":[{"id":"https://openalex.org/C122325731","wikidata":"https://www.wikidata.org/wiki/Q3738459","display_name":"Relative species abundance","level":3,"score":0.8419781923294067},{"id":"https://openalex.org/C62438384","wikidata":"https://www.wikidata.org/wiki/Q331350","display_name":"Simplex","level":2,"score":0.5798869729042053},{"id":"https://openalex.org/C77077793","wikidata":"https://www.wikidata.org/wiki/Q336019","display_name":"Abundance (ecology)","level":2,"score":0.5500791668891907},{"id":"https://openalex.org/C158622935","wikidata":"https://www.wikidata.org/wiki/Q660848","display_name":"Nonlinear system","level":2,"score":0.525698184967041},{"id":"https://openalex.org/C81407943","wikidata":"https://www.wikidata.org/wiki/Q17149178","display_name":"Microbial population biology","level":3,"score":0.5172699093818665},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.4663291275501251},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.445246160030365},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.4357847571372986},{"id":"https://openalex.org/C49539007","wikidata":"https://www.wikidata.org/wiki/Q7782365","display_name":"Theoretical ecology","level":3,"score":0.41186514496803284},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4037250280380249},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3917481303215027},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3518095910549164},{"id":"https://openalex.org/C149782125","wikidata":"https://www.wikidata.org/wiki/Q160039","display_name":"Econometrics","level":1,"score":0.33568233251571655},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2770657539367676},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.24384599924087524},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.08322739601135254},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000075082","descriptor_name":"Proof of Concept Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000075082","descriptor_name":"Proof of Concept Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000075082","descriptor_name":"Proof of Concept Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000075082","descriptor_name":"Proof of Concept Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016360","descriptor_name":"Clostridioides difficile","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D016360","descriptor_name":"Clostridioides difficile","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D016360","descriptor_name":"Clostridioides difficile","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D016360","descriptor_name":"Clostridioides difficile","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1007917","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007917","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:32469867","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32469867","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1007917","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007917","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:5240174de84743169bdf1c704a15c5ff","is_oa":true,"landing_page_url":"https://doaj.org/article/5240174de84743169bdf1c704a15c5ff","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 16, Iss 5, p e1007917 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7325845","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7325845","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1007917","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007917","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.6299999952316284}],"awards":[{"id":"https://openalex.org/G1186668200","display_name":null,"funder_award_id":"1705197","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2105047437","display_name":null,"funder_award_id":"DGE-1644869","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4190684412","display_name":null,"funder_award_id":"U54CA209997","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5551450873","display_name":null,"funder_award_id":"1644869","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G636549088","display_name":null,"funder_award_id":"HG010505","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6570713827","display_name":null,"funder_award_id":"DGE-1644869","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6990527500","display_name":null,"funder_award_id":"1547120","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8326399121","display_name":null,"funder_award_id":"DGE-1144854","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8756038820","display_name":"IGERT: From Data to Solutions:  A New PhD Program in Transformational Data & Information Sciences Research and Innovation","funder_award_id":"1144854","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G960570965","display_name":null,"funder_award_id":"1644869","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W910660817","https://openalex.org/W1503352355","https://openalex.org/W1563645121","https://openalex.org/W1864161604","https://openalex.org/W1983314776","https://openalex.org/W1993830991","https://openalex.org/W2004728046","https://openalex.org/W2012994611","https://openalex.org/W2015676014","https://openalex.org/W2078112764","https://openalex.org/W2122825543","https://openalex.org/W2139284253","https://openalex.org/W2149711482","https://openalex.org/W2149846618","https://openalex.org/W2156975150","https://openalex.org/W2163903604","https://openalex.org/W2166325326","https://openalex.org/W2259238261","https://openalex.org/W2334099820","https://openalex.org/W2413154614","https://openalex.org/W2506906012","https://openalex.org/W2510675082","https://openalex.org/W2561761056","https://openalex.org/W2589887861","https://openalex.org/W2597600384","https://openalex.org/W2769542288","https://openalex.org/W2798633897","https://openalex.org/W2804460705","https://openalex.org/W2947189704","https://openalex.org/W2947640277","https://openalex.org/W2952314958","https://openalex.org/W2955161809","https://openalex.org/W2969872083","https://openalex.org/W2990249310","https://openalex.org/W4299542564"],"related_works":["https://openalex.org/W2584555451","https://openalex.org/W1992129506","https://openalex.org/W4383370108","https://openalex.org/W2800755639","https://openalex.org/W3202682012","https://openalex.org/W2066907710","https://openalex.org/W2007190081","https://openalex.org/W1987708824","https://openalex.org/W1981662201","https://openalex.org/W2044575535"],"abstract_inverted_index":{"Dynamic":[0],"changes":[1],"in":[2,9,19,68,128,132,153,158,167],"microbial":[3,17,66,82,130],"communities":[4],"play":[5],"an":[6],"important":[7],"role":[8],"human":[10],"health":[11],"and":[12,26,98,163],"disease.":[13],"Specifically,":[14],"deciphering":[15],"how":[16],"species":[18],"a":[20,34,76,159,164],"community":[21,41,96,180],"interact":[22],"with":[23],"each":[24],"other":[25,143],"their":[27],"environment":[28],"can":[29,192],"elucidate":[30],"mechanisms":[31],"of":[32,48,57,65,71,134,145,170],"disease,":[33],"problem":[35],"typically":[36],"investigated":[37],"using":[38,90],"tools":[39],"from":[40,95,195,215],"ecology.":[42],"Yet,":[43],"such":[44],"methods":[45],"require":[46],"measurements":[47],"absolute":[49],"densities,":[50],"whereas":[51],"typical":[52],"datasets":[53],"only":[54,203],"provide":[55,173,200],"estimates":[56],"relative":[58,72,113,135,146,171,196,216],"abundances.":[59,73,136],"Here,":[60],"we":[61,106,119,185],"systematically":[62],"investigate":[63,186],"models":[64,144],"dynamics":[67,148],"the":[69,154,168],"simplex":[70],"We":[74,137],"derive":[75],"new":[77],"nonlinear":[78],"dynamical":[79],"system":[80],"for":[81],"dynamics,":[83],"termed":[84],"\"compositional\"":[85],"Lotka-Volterra":[86,92],"(cLV),":[87],"unifying":[88],"approaches":[89],"generalized":[91],"(gLV)":[93],"equations":[94],"ecology":[97],"compositional":[99],"data":[100,197],"analysis.":[101],"On":[102],"three":[103],"real":[104],"datasets,":[105],"demonstrate":[107],"that":[108,121,175,198,209],"cLV":[109,122,140,176],"recapitulates":[110],"interactions":[111],"between":[112],"abundances":[114],"implied":[115],"by":[116,150],"gLV.":[117],"Moreover,":[118],"show":[120],"is":[123],"as":[124,126],"accurate":[125],"gLV":[127],"forecasting":[129],"trajectories":[131,181],"terms":[133],"further":[138],"compare":[139],"to":[141,224],"two":[142],"abundance":[147],"motivated":[149],"common":[151],"assumptions":[152],"literature-a":[155],"linear":[156,165],"model":[157,166],"log-ratio":[160],"transformed":[161],"space,":[162],"space":[169],"abundances-and":[172],"evidence":[174],"more":[177,219],"accurately":[178],"describes":[179],"over":[182],"time.":[183],"Finally,":[184],"when":[187],"information":[188,201],"about":[189,202],"direct":[190],"effects":[191,211,221],"be":[193,213],"recovered":[194],"naively":[199],"indirect":[204],"effects.":[205],"Our":[206],"results":[207],"suggest":[208],"strong":[210],"may":[212],"recoverable":[214],"data,":[217],"but":[218],"subtle":[220],"are":[222],"challenging":[223],"identify.":[225]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":16},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":2}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
