{"id":"https://openalex.org/W3023721945","doi":"https://doi.org/10.1371/journal.pcbi.1007893","title":"Calibration of individual-based models to epidemiological data: A systematic review","display_name":"Calibration of individual-based models to epidemiological data: A systematic review","publication_year":2020,"publication_date":"2020-05-11","ids":{"openalex":"https://openalex.org/W3023721945","doi":"https://doi.org/10.1371/journal.pcbi.1007893","mag":"3023721945","pmid":"https://pubmed.ncbi.nlm.nih.gov/32392252"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1007893","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007893","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1007893","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018399354","display_name":"C. Marijn Hazelbag","orcid":"https://orcid.org/0000-0002-7694-5436"},"institutions":[{"id":"https://openalex.org/I26092322","display_name":"Stellenbosch University","ror":"https://ror.org/05bk57929","country_code":"ZA","type":"education","lineage":["https://openalex.org/I26092322"]}],"countries":["ZA"],"is_corresponding":true,"raw_author_name":"C. Marijn Hazelbag","raw_affiliation_strings":["South African DSI-NRF Centre of Excellence in Epidemiological Modelling and Analysis (SACEMA), Stellenbosch University, Stellenbosch, South Africa"],"raw_orcid":"https://orcid.org/0000-0002-7694-5436","affiliations":[{"raw_affiliation_string":"South African DSI-NRF Centre of Excellence in Epidemiological Modelling and Analysis (SACEMA), Stellenbosch University, Stellenbosch, South Africa","institution_ids":["https://openalex.org/I26092322"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071611289","display_name":"Jonathan Dushoff","orcid":"https://orcid.org/0000-0003-0506-4794"},"institutions":[{"id":"https://openalex.org/I26092322","display_name":"Stellenbosch University","ror":"https://ror.org/05bk57929","country_code":"ZA","type":"education","lineage":["https://openalex.org/I26092322"]},{"id":"https://openalex.org/I98251732","display_name":"McMaster University","ror":"https://ror.org/02fa3aq29","country_code":"CA","type":"education","lineage":["https://openalex.org/I98251732"]}],"countries":["CA","ZA"],"is_corresponding":false,"raw_author_name":"Jonathan Dushoff","raw_affiliation_strings":["Department of Biology, Department of Mathematics and Statistics, Institute for Infectious Disease Research, McMaster University, Hamilton, Ontario, Canada","South African DSI-NRF Centre of Excellence in Epidemiological Modelling and Analysis (SACEMA), Stellenbosch University, Stellenbosch, South Africa"],"raw_orcid":"https://orcid.org/0000-0003-0506-4794","affiliations":[{"raw_affiliation_string":"Department of Biology, Department of Mathematics and Statistics, Institute for Infectious Disease Research, McMaster University, Hamilton, Ontario, Canada","institution_ids":["https://openalex.org/I98251732"]},{"raw_affiliation_string":"South African DSI-NRF Centre of Excellence in Epidemiological Modelling and Analysis (SACEMA), Stellenbosch University, Stellenbosch, South Africa","institution_ids":["https://openalex.org/I26092322"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090196228","display_name":"Emanuel M. Dominic","orcid":"https://orcid.org/0000-0003-1525-8250"},"institutions":[{"id":"https://openalex.org/I26092322","display_name":"Stellenbosch University","ror":"https://ror.org/05bk57929","country_code":"ZA","type":"education","lineage":["https://openalex.org/I26092322"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Emanuel M. Dominic","raw_affiliation_strings":["South African DSI-NRF Centre of Excellence in Epidemiological Modelling and Analysis (SACEMA), Stellenbosch University, Stellenbosch, South Africa"],"raw_orcid":"https://orcid.org/0000-0003-1525-8250","affiliations":[{"raw_affiliation_string":"South African DSI-NRF Centre of Excellence in Epidemiological Modelling and Analysis (SACEMA), Stellenbosch University, Stellenbosch, South Africa","institution_ids":["https://openalex.org/I26092322"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006612751","display_name":"Zinhle E. Mthombothi","orcid":"https://orcid.org/0000-0002-0078-1260"},"institutions":[{"id":"https://openalex.org/I26092322","display_name":"Stellenbosch University","ror":"https://ror.org/05bk57929","country_code":"ZA","type":"education","lineage":["https://openalex.org/I26092322"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Zinhle E. Mthombothi","raw_affiliation_strings":["South African DSI-NRF Centre of Excellence in Epidemiological Modelling and Analysis (SACEMA), Stellenbosch University, Stellenbosch, South Africa"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"South African DSI-NRF Centre of Excellence in Epidemiological Modelling and Analysis (SACEMA), Stellenbosch University, Stellenbosch, South Africa","institution_ids":["https://openalex.org/I26092322"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059429278","display_name":"Wim Delva","orcid":"https://orcid.org/0000-0001-8054-1904"},"institutions":[{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]},{"id":"https://openalex.org/I26092322","display_name":"Stellenbosch University","ror":"https://ror.org/05bk57929","country_code":"ZA","type":"education","lineage":["https://openalex.org/I26092322"]},{"id":"https://openalex.org/I2801227569","display_name":"Ghent University Hospital","ror":"https://ror.org/00xmkp704","country_code":"BE","type":"healthcare","lineage":["https://openalex.org/I2801227569"]},{"id":"https://openalex.org/I878454856","display_name":"Hasselt University","ror":"https://ror.org/04nbhqj75","country_code":"BE","type":"education","lineage":["https://openalex.org/I878454856"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE","ZA"],"is_corresponding":false,"raw_author_name":"Wim Delva","raw_affiliation_strings":["Center for Statistics, I-BioStat, Hasselt University, Diepenbeek, Belgium","Department of Global Health, Faculty of Medicine and Health, Stellenbosch University, Stellenbosch, South Africa","International Centre for Reproductive Health, Ghent University, Ghent, Belgium","Rega Institute for Medical Research, KU Leuven, Leuven, Belgium","School for Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa","South African DSI-NRF Centre of Excellence in Epidemiological Modelling and Analysis (SACEMA), Stellenbosch University, Stellenbosch, South Africa"],"raw_orcid":"https://orcid.org/0000-0001-8054-1904","affiliations":[{"raw_affiliation_string":"Center for Statistics, I-BioStat, Hasselt University, Diepenbeek, Belgium","institution_ids":["https://openalex.org/I878454856"]},{"raw_affiliation_string":"Department of Global Health, Faculty of Medicine and Health, Stellenbosch University, Stellenbosch, South Africa","institution_ids":["https://openalex.org/I26092322"]},{"raw_affiliation_string":"International Centre for Reproductive Health, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I2801227569"]},{"raw_affiliation_string":"Rega Institute for Medical Research, KU Leuven, Leuven, Belgium","institution_ids":["https://openalex.org/I24156275","https://openalex.org/I99464096"]},{"raw_affiliation_string":"School for Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa","institution_ids":["https://openalex.org/I26092322"]},{"raw_affiliation_string":"South African DSI-NRF Centre of Excellence in Epidemiological Modelling and Analysis (SACEMA), Stellenbosch University, Stellenbosch, South Africa","institution_ids":["https://openalex.org/I26092322"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5018399354"],"corresponding_institution_ids":["https://openalex.org/I26092322"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.8405,"has_fulltext":false,"cited_by_count":48,"citation_normalized_percentile":{"value":0.80309482,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"16","issue":"5","first_page":"e1007893","last_page":"e1007893"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.9767000079154968,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.9767000079154968,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10629","display_name":"Health Policy Implementation Science","score":0.9735999703407288,"subfield":{"id":"https://openalex.org/subfields/3600","display_name":"General Health Professions"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T14509","display_name":"demographic modeling and climate adaptation","score":0.9233999848365784,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/calibration","display_name":"Calibration","score":0.7043682932853699},{"id":"https://openalex.org/keywords/measure","display_name":"Measure (data warehouse)","score":0.5424623489379883},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5377936363220215},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5202154517173767},{"id":"https://openalex.org/keywords/goodness-of-fit","display_name":"Goodness of fit","score":0.5095427632331848},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4714798927307129},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.43095988035202026},{"id":"https://openalex.org/keywords/econometrics","display_name":"Econometrics","score":0.37145787477493286},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.33482494950294495},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3319641351699829},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3152742385864258},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.17564836144447327},{"id":"https://openalex.org/keywords/environmental-health","display_name":"Environmental health","score":0.09904736280441284}],"concepts":[{"id":"https://openalex.org/C165838908","wikidata":"https://www.wikidata.org/wiki/Q736777","display_name":"Calibration","level":2,"score":0.7043682932853699},{"id":"https://openalex.org/C2780009758","wikidata":"https://www.wikidata.org/wiki/Q6804172","display_name":"Measure (data warehouse)","level":2,"score":0.5424623489379883},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5377936363220215},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5202154517173767},{"id":"https://openalex.org/C132480984","wikidata":"https://www.wikidata.org/wiki/Q2034239","display_name":"Goodness of fit","level":2,"score":0.5095427632331848},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4714798927307129},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.43095988035202026},{"id":"https://openalex.org/C149782125","wikidata":"https://www.wikidata.org/wiki/Q160039","display_name":"Econometrics","level":1,"score":0.37145787477493286},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.33482494950294495},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3319641351699829},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3152742385864258},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.17564836144447327},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.09904736280441284}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002138","descriptor_name":"Calibration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002138","descriptor_name":"Calibration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002138","descriptor_name":"Calibration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008288","descriptor_name":"Malaria","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D008288","descriptor_name":"Malaria","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D008288","descriptor_name":"Malaria","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014376","descriptor_name":"Tuberculosis","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D014376","descriptor_name":"Tuberculosis","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D014376","descriptor_name":"Tuberculosis","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1371/journal.pcbi.1007893","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007893","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:32392252","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32392252","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:lirias2repo.kuleuven.be:20.500.12942/749049","is_oa":true,"landing_page_url":"https://lirias.kuleuven.be/handle/20.500.12942/749049","pdf_url":null,"source":{"id":"https://openalex.org/S4306401954","display_name":"Lirias (KU Leuven)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I99464096","host_organization_name":"KU Leuven","host_organization_lineage":["https://openalex.org/I99464096"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Plos Computational Biology, vol. 16 (5), Art.No. ARTN e1007893","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:RePEc:plo:pcbi00:1007893","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007893","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:archive.ugent.be:8664794","is_oa":true,"landing_page_url":"http://hdl.handle.net/1854/LU-8664794","pdf_url":null,"source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLOS COMPUTATIONAL BIOLOGY","raw_type":"journalArticle"},{"id":"pmh:oai:doaj.org/article:8db151a52b3242a0b300363a4e810305","is_oa":true,"landing_page_url":"https://doaj.org/article/8db151a52b3242a0b300363a4e810305","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 16, Iss 5, p e1007893 (2020)","raw_type":"article"},{"id":"pmh:oai:documentserver.uhasselt.be:1942/31812","is_oa":true,"landing_page_url":"http://hdl.handle.net/1942/31812","pdf_url":null,"source":{"id":"https://openalex.org/S4306401926","display_name":"Document Server@UHasselt (UHasselt)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I878454856","host_organization_name":"Hasselt University","host_organization_lineage":["https://openalex.org/I878454856"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/review"},{"id":"pmh:oai:pubmedcentral.nih.gov:7241852","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7241852","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1007893","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007893","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.8600000143051147,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1014123249","display_name":null,"funder_award_id":"12L5816N","funder_id":"https://openalex.org/F4320321730","funder_display_name":"Fonds Wetenschappelijk Onderzoek"}],"funders":[{"id":"https://openalex.org/F4320321730","display_name":"Fonds Wetenschappelijk Onderzoek","ror":"https://ror.org/03qtxy027"},{"id":"https://openalex.org/F4320327336","display_name":"Vlaamse regering","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":75,"referenced_works":["https://openalex.org/W37728405","https://openalex.org/W205142180","https://openalex.org/W1482581820","https://openalex.org/W1506560069","https://openalex.org/W1569777184","https://openalex.org/W1973333099","https://openalex.org/W1983099157","https://openalex.org/W1987483064","https://openalex.org/W2005501262","https://openalex.org/W2006757919","https://openalex.org/W2013329800","https://openalex.org/W2029548355","https://openalex.org/W2029579407","https://openalex.org/W2034380059","https://openalex.org/W2034391927","https://openalex.org/W2049588492","https://openalex.org/W2062488083","https://openalex.org/W2071870246","https://openalex.org/W2076003266","https://openalex.org/W2109378009","https://openalex.org/W2110065044","https://openalex.org/W2114478047","https://openalex.org/W2126187295","https://openalex.org/W2129078489","https://openalex.org/W2134297054","https://openalex.org/W2136133754","https://openalex.org/W2139526590","https://openalex.org/W2141663349","https://openalex.org/W2144652875","https://openalex.org/W2156098321","https://openalex.org/W2171074980","https://openalex.org/W2201411497","https://openalex.org/W2204468525","https://openalex.org/W2254391763","https://openalex.org/W2325343629","https://openalex.org/W2341171179","https://openalex.org/W2402448184","https://openalex.org/W2414372196","https://openalex.org/W2415368662","https://openalex.org/W2427536221","https://openalex.org/W2466372953","https://openalex.org/W2473859150","https://openalex.org/W2516860705","https://openalex.org/W2522847665","https://openalex.org/W2534708821","https://openalex.org/W2594816818","https://openalex.org/W2610626809","https://openalex.org/W2620045126","https://openalex.org/W2626930952","https://openalex.org/W2747702353","https://openalex.org/W2751008446","https://openalex.org/W2751317214","https://openalex.org/W2763920787","https://openalex.org/W2765544560","https://openalex.org/W2769147200","https://openalex.org/W2796788686","https://openalex.org/W2797452937","https://openalex.org/W2798326121","https://openalex.org/W2834682931","https://openalex.org/W2906872406","https://openalex.org/W2909489967","https://openalex.org/W2963808807","https://openalex.org/W2980838689","https://openalex.org/W2982692495","https://openalex.org/W2986179410","https://openalex.org/W2991792334","https://openalex.org/W3098945842","https://openalex.org/W3103595226","https://openalex.org/W3128629231","https://openalex.org/W3168017879","https://openalex.org/W4233991779","https://openalex.org/W4246685972","https://openalex.org/W4285719527","https://openalex.org/W4289282836","https://openalex.org/W6608308453"],"related_works":["https://openalex.org/W1541538682","https://openalex.org/W2955895218","https://openalex.org/W2097522327","https://openalex.org/W4255837520","https://openalex.org/W2050686036","https://openalex.org/W4401391986","https://openalex.org/W3167233239","https://openalex.org/W2493307909","https://openalex.org/W2621433169","https://openalex.org/W2387011115"],"abstract_inverted_index":{"Individual-based":[0],"models":[1,88],"(IBMs)":[2],"informing":[3,65],"public":[4,66],"health":[5,67],"policy":[6,68],"should":[7],"be":[8,177],"calibrated":[9],"to":[10,62,98,288],"data":[11],"and":[12,27,72,80,92,109,162,252,268,295],"provide":[13],"estimates":[14],"of":[15,20,37,44,119,159,203,214,226,249,258,271,285],"uncertainty.":[16],"Two":[17],"main":[18],"components":[19],"model-calibration":[21,227],"methods":[22,46,61,240,263,287],"are":[23],"the":[24,28,123,127,166,171,193,199,204,215,269,283,292],"parameter-search":[25,105,140,160,172,293],"strategy":[26,173],"goodness-of-fit":[29],"(GOF)":[30],"measure;":[31],"many":[32],"options":[33],"exist":[34],"for":[35,223,280],"each":[36],"these.":[38],"This":[39],"review":[40,124],"provides":[41],"an":[42,138,142,184],"overview":[43],"calibration":[45,93,239,262,286],"used":[47],"in":[48,69,156,233,245,273],"IBMs":[49,64],"modelling":[50,247],"infectious":[51],"disease":[52],"spread.":[53],"We":[54,101],"identified":[55,115,178],"articles":[56,153],"on":[57,104,238],"PubMed":[58,113],"employing":[59],"simulation-based":[60],"calibrate":[63],"HIV,":[70,250],"tuberculosis,":[71],"malaria":[73,251],"epidemiology":[74],"published":[75],"between":[76],"1":[77],"January":[78],"2013":[79],"31":[81,234],"December":[82],"2018.":[83],"Articles":[84],"were":[85,196],"included":[86,128,216],"if":[87],"stored":[89],"individual-specific":[90],"information,":[91],"involved":[94],"comparing":[95,282],"model":[96,110],"output":[97],"population-level":[99],"targets.":[100],"extracted":[102],"information":[103],"strategies,":[106],"GOF":[107,135,163,200,296],"measures,":[108],"validation.":[111],"The":[112,256],"search":[114],"653":[116],"candidate":[117],"articles,":[118,129,170,192,217],"which":[120],"84":[121],"met":[122],"criteria.":[125],"Of":[126,189],"40":[130,152],"(48%)":[131],"combined":[132],"a":[133,147,212,221,278],"quantitative":[134],"measure":[136,201],"with":[137],"algorithmic":[139,261],"strategy-either":[141],"optimisation":[143],"algorithm":[144,149],"(14/40)":[145],"or":[146,180],"sampling":[148],"(26/40).":[150],"These":[151],"varied":[154],"widely":[155],"their":[157,224],"choices":[158],"strategies":[161,294],"measures.":[164,297],"For":[165],"remaining":[167],"44":[168,191],"(52%)":[169],"could":[174,264],"either":[175],"not":[176],"(32/44)":[179],"was":[181,231],"described":[182],"as":[183],"informal,":[185],"non-reproducible":[186],"method":[187],"(12/44).":[188],"these":[190],"majority":[194],"(25/44)":[195],"unclear":[197],"about":[198,291],"used;":[202],"rest,":[205],"only":[206],"five":[207],"quantitatively":[208],"evaluated":[209],"GOF.":[210],"Only":[211],"minority":[213],"14":[218],"(17%)":[219],"provided":[220],"rationale":[222],"choice":[225],"method.":[228],"Model":[229],"validation":[230],"reported":[232],"(37%)":[235],"articles.":[236],"Reporting":[237],"is":[241,277],"far":[242],"from":[243],"optimal":[244],"epidemiological":[246],"studies":[248],"TB":[253],"transmission":[254],"dynamics.":[255],"adoption":[257],"better":[259],"documented,":[260],"improve":[265],"both":[266],"reproducibility":[267],"quality":[270],"inference":[272],"model-based":[274],"epidemiology.":[275],"There":[276],"need":[279],"research":[281],"performance":[284],"inform":[289],"decisions":[290]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":17},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":5}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
