{"id":"https://openalex.org/W3015449728","doi":"https://doi.org/10.1371/journal.pcbi.1007792","title":"eXplainable Artificial Intelligence (XAI) for the identification of biologically relevant gene expression patterns in longitudinal human studies, insights from obesity research","display_name":"eXplainable Artificial Intelligence (XAI) for the identification of biologically relevant gene expression patterns in longitudinal human studies, insights from obesity research","publication_year":2020,"publication_date":"2020-04-10","ids":{"openalex":"https://openalex.org/W3015449728","doi":"https://doi.org/10.1371/journal.pcbi.1007792","mag":"3015449728","pmid":"https://pubmed.ncbi.nlm.nih.gov/32275707"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1007792","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007792","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1007792","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089947179","display_name":"Augusto Anguita\u2010Ruiz","orcid":"https://orcid.org/0000-0001-6888-1041"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]},{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I2801724371","display_name":"Spanish Biomedical Research Centre in Physiopathology of Obesity and Nutrition","ror":"https://ror.org/02s65tk16","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801724371"]},{"id":"https://openalex.org/I4210113665","display_name":"Instituto de Investigaci\u00f3n Biosanitaria de Granada","ror":"https://ror.org/026yy9j15","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210113665"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Augusto Anguita-Ruiz","raw_affiliation_strings":["CIBEROBN (Physiopathology of Obesity and Nutrition), Instituto de Salud Carlos III (ISCIII), Madrid, Spain","Department of Biochemistry and Molecular Biology II, Institute of Nutrition and Food Technology \"Jos\u00e9 Mataix\", Center of Biomedical Research, University of Granada, Granada, Spain","Instituto de Investigaci\u00f3n Biosanitaria ibs.GRANADA, Granada, Spain","Department of Biochemistry and Molecular Biology II, Institute of Nutrition and Food Technology"],"raw_orcid":"https://orcid.org/0000-0001-6888-1041","affiliations":[{"raw_affiliation_string":"CIBEROBN (Physiopathology of Obesity and Nutrition), Instituto de Salud Carlos III (ISCIII), Madrid, Spain","institution_ids":["https://openalex.org/I2801724371","https://openalex.org/I2801357902"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology II, Institute of Nutrition and Food Technology \"Jos\u00e9 Mataix\", Center of Biomedical Research, University of Granada, Granada, Spain","institution_ids":["https://openalex.org/I173304897"]},{"raw_affiliation_string":"Instituto de Investigaci\u00f3n Biosanitaria ibs.GRANADA, Granada, Spain","institution_ids":["https://openalex.org/I4210113665"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology II, Institute of Nutrition and Food Technology","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023082523","display_name":"Alberto Segura\u2010Delgado","orcid":"https://orcid.org/0000-0003-0499-2978"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alberto Segura-Delgado","raw_affiliation_strings":["Department of Computer Science and Artificial Intelligence, University of Granada, Granada, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Artificial Intelligence, University of Granada, Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064161587","display_name":"Rafael Alcal\u00e1","orcid":null},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Rafael Alcal\u00e1","raw_affiliation_strings":["Department of Computer Science and Artificial Intelligence, University of Granada, Granada, Spain"],"raw_orcid":"https://orcid.org/0000-0003-1140-6156","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Artificial Intelligence, University of Granada, Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050938059","display_name":"Concepci\u00f3n M. Aguilera","orcid":"https://orcid.org/0000-0002-1451-4788"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]},{"id":"https://openalex.org/I2801357902","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886","country_code":"ES","type":"funder","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4387152914"]},{"id":"https://openalex.org/I2801724371","display_name":"Spanish Biomedical Research Centre in Physiopathology of Obesity and Nutrition","ror":"https://ror.org/02s65tk16","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801724371"]},{"id":"https://openalex.org/I4210113665","display_name":"Instituto de Investigaci\u00f3n Biosanitaria de Granada","ror":"https://ror.org/026yy9j15","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210113665"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Concepci\u00f3n M. Aguilera","raw_affiliation_strings":["CIBEROBN (Physiopathology of Obesity and Nutrition), Instituto de Salud Carlos III (ISCIII), Madrid, Spain","Department of Biochemistry and Molecular Biology II, Institute of Nutrition and Food Technology \"Jos\u00e9 Mataix\", Center of Biomedical Research, University of Granada, Granada, Spain","Instituto de Investigaci\u00f3n Biosanitaria ibs.GRANADA, Granada, Spain","Department of Biochemistry and Molecular Biology II, Institute of Nutrition and Food Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIBEROBN (Physiopathology of Obesity and Nutrition), Instituto de Salud Carlos III (ISCIII), Madrid, Spain","institution_ids":["https://openalex.org/I2801724371","https://openalex.org/I2801357902"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology II, Institute of Nutrition and Food Technology \"Jos\u00e9 Mataix\", Center of Biomedical Research, University of Granada, Granada, Spain","institution_ids":["https://openalex.org/I173304897"]},{"raw_affiliation_string":"Instituto de Investigaci\u00f3n Biosanitaria ibs.GRANADA, Granada, Spain","institution_ids":["https://openalex.org/I4210113665"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology II, Institute of Nutrition and Food Technology","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007045654","display_name":"Jes\u00fas Alcal\u00e1\u2010Fdez","orcid":"https://orcid.org/0000-0002-6190-3575"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jes\u00fas Alcal\u00e1-Fdez","raw_affiliation_strings":["Department of Computer Science and Artificial Intelligence, University of Granada, Granada, Spain"],"raw_orcid":"https://orcid.org/0000-0002-6190-3575","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Artificial Intelligence, University of Granada, Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5089947179"],"corresponding_institution_ids":["https://openalex.org/I173304897","https://openalex.org/I2801357902","https://openalex.org/I2801724371","https://openalex.org/I4210113665"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":5.9793,"has_fulltext":false,"cited_by_count":61,"citation_normalized_percentile":{"value":0.96902488,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"16","issue":"4","first_page":"e1007792","last_page":"e1007792"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12026","display_name":"Explainable Artificial Intelligence (XAI)","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12026","display_name":"Explainable Artificial Intelligence (XAI)","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9783999919891357,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9714999794960022,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6655069589614868},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4541856050491333},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4443839192390442},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.43056491017341614},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3723168969154358},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3719690442085266},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.33189475536346436},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.28479140996932983},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.24552270770072937},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2140677571296692},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.11208543181419373}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6655069589614868},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4541856050491333},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4443839192390442},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.43056491017341614},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3723168969154358},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3719690442085266},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.33189475536346436},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.28479140996932983},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.24552270770072937},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2140677571296692},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.11208543181419373},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":"Q000639","qualifier_name":"trends","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008137","descriptor_name":"Longitudinal Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008137","descriptor_name":"Longitudinal Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008137","descriptor_name":"Longitudinal Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008137","descriptor_name":"Longitudinal Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1371/journal.pcbi.1007792","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007792","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:32275707","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32275707","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:www.repositoriosalud.es:10668/15352","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7176286/pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4377196114","display_name":"RISalud Institutional Health Repository of Andaluc\u00eda","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"research article"},{"id":"pmh:oai:RePEc:plo:pcbi00:1007792","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007792","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:digibug.ugr.es:10481/62400","is_oa":true,"landing_page_url":"http://hdl.handle.net/10481/62400","pdf_url":null,"source":{"id":"https://openalex.org/S4306400567","display_name":"Institutional Repository of the University of Granada (University of Granada)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I173304897","host_organization_name":"Universidad de Granada","host_organization_lineage":["https://openalex.org/I173304897"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:f61cdcfc4828486a96db75d1c91738c1","is_oa":true,"landing_page_url":"https://doaj.org/article/f61cdcfc4828486a96db75d1c91738c1","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 16, Iss 4, p e1007792 (2020)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/12113544","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/eXplainable_Artificial_Intelligence_XAI_for_the_identification_of_biologically_relevant_gene_expression_patterns_in_longitudinal_human_studies_insights_from_obesity_research/12113544","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:7176286","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7176286","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:www.repositoriosalud.es:10668/3873","is_oa":true,"landing_page_url":"http://hdl.handle.net/10668/3873","pdf_url":null,"source":{"id":"https://openalex.org/S4377196114","display_name":"RISalud Institutional Health Repository of Andaluc\u00eda","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"research article"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1007792","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007792","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4026103231","display_name":null,"funder_award_id":"IFI17/00048","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G4193446334","display_name":null,"funder_award_id":"2013-2016","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G8418255654","display_name":null,"funder_award_id":"00048","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"}],"funders":[{"id":"https://openalex.org/F4320321854","display_name":"Fundaci\u00f3n Mapfre","ror":"https://ror.org/0248qb926"},{"id":"https://openalex.org/F4320323834","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449"},{"id":"https://openalex.org/F4320334923","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":72,"referenced_works":["https://openalex.org/W188378287","https://openalex.org/W1503830687","https://openalex.org/W1966327575","https://openalex.org/W1974184487","https://openalex.org/W1987860439","https://openalex.org/W1998767819","https://openalex.org/W2009786561","https://openalex.org/W2023098599","https://openalex.org/W2030132106","https://openalex.org/W2037965136","https://openalex.org/W2048528401","https://openalex.org/W2050077513","https://openalex.org/W2057368600","https://openalex.org/W2058244074","https://openalex.org/W2062029454","https://openalex.org/W2070902799","https://openalex.org/W2084168100","https://openalex.org/W2097994458","https://openalex.org/W2098666354","https://openalex.org/W2102297485","https://openalex.org/W2103017472","https://openalex.org/W2109384743","https://openalex.org/W2109972881","https://openalex.org/W2118258530","https://openalex.org/W2126531665","https://openalex.org/W2126540878","https://openalex.org/W2128150566","https://openalex.org/W2136425420","https://openalex.org/W2140278658","https://openalex.org/W2145059904","https://openalex.org/W2145640629","https://openalex.org/W2146053060","https://openalex.org/W2147013674","https://openalex.org/W2153490111","https://openalex.org/W2164495402","https://openalex.org/W2166559705","https://openalex.org/W2167638767","https://openalex.org/W2169950095","https://openalex.org/W2191975304","https://openalex.org/W2277210191","https://openalex.org/W2283809486","https://openalex.org/W2293836648","https://openalex.org/W2311607323","https://openalex.org/W2360114527","https://openalex.org/W2528491735","https://openalex.org/W2550838115","https://openalex.org/W2564980658","https://openalex.org/W2576841927","https://openalex.org/W2580643247","https://openalex.org/W2594475271","https://openalex.org/W2606847111","https://openalex.org/W2624850887","https://openalex.org/W2738579191","https://openalex.org/W2753415590","https://openalex.org/W2759304130","https://openalex.org/W2760991257","https://openalex.org/W2765083428","https://openalex.org/W2782454362","https://openalex.org/W2799978858","https://openalex.org/W2884025810","https://openalex.org/W2892573831","https://openalex.org/W2898718965","https://openalex.org/W2901144895","https://openalex.org/W2910563713","https://openalex.org/W2914131740","https://openalex.org/W2935024989","https://openalex.org/W2945976633","https://openalex.org/W2963125832","https://openalex.org/W2973243167","https://openalex.org/W2998574808","https://openalex.org/W3102927519","https://openalex.org/W4253336088"],"related_works":["https://openalex.org/W2392243736","https://openalex.org/W86652014","https://openalex.org/W2898732673","https://openalex.org/W2410053581","https://openalex.org/W2383658677","https://openalex.org/W3123203398","https://openalex.org/W2328518092","https://openalex.org/W3101249758","https://openalex.org/W2382079200","https://openalex.org/W3129895999"],"abstract_inverted_index":{"Until":[0],"date,":[1],"several":[2],"machine":[3],"learning":[4],"approaches":[5,66],"have":[6,19,44],"been":[7,45,198],"proposed":[8],"for":[9,61,70,114,185],"the":[10,48,77,129,143,165,180,186],"dynamic":[11],"modeling":[12],"of":[13,25,32,76,131,145,182,188],"temporal":[14,139,192,211],"omics":[15],"data.":[16],"Although":[17],"they":[18],"yielded":[20],"impressive":[21],"results":[22],"in":[23,137,150],"terms":[24],"model":[26],"accuracy":[27],"and":[28,40,84,94,111,178,203],"predictive":[29],"ability,":[30],"most":[31],"these":[33],"applications":[34],"are":[35,67],"based":[36],"on":[37,136],"\"Black-box\"":[38],"algorithms":[39],"more":[41,92],"interpretable":[42],"models":[43],"claimed":[46],"by":[47],"research":[49],"community.":[50],"The":[51,73],"recent":[52],"eXplainable":[53],"Artificial":[54],"Intelligence":[55],"(XAI)":[56],"revolution":[57],"offers":[58],"a":[59,103,146,170],"solution":[60],"this":[62,99],"issue,":[63],"were":[64],"rule-based":[65,105],"highly":[68],"suitable":[69],"explanatory":[71,93],"purposes.":[72],"further":[74],"integration":[75],"data":[78,125],"mining":[79,187],"process":[80],"along":[81],"with":[82,153],"functional-annotation":[83],"pathway":[85],"analyses":[86],"is":[87],"an":[88],"additional":[89],"way":[90],"towards":[91],"biologically":[95,116,189],"soundness":[96],"models.":[97],"In":[98],"paper,":[100],"we":[101,134,159,172],"present":[102],"novel":[104],"XAI":[106],"strategy":[107,184],"(including":[108],"pre-processing,":[109],"knowledge-extraction":[110],"functional":[112],"validation)":[113],"finding":[115],"relevant":[117,190],"sequential":[118],"patterns":[119,177],"from":[120],"longitudinal":[121],"human":[122,210],"gene":[123,176],"expression":[124],"(GED).":[126],"To":[127],"illustrate":[128],"performance":[130],"our":[132,183],"pipeline,":[133],"work":[135],"vivo":[138],"GED":[140,212],"collected":[141],"within":[142],"course":[144],"long-term":[147],"dietary":[148],"intervention":[149],"57":[151],"subjects":[152],"obesity":[154],"(GSE77962).":[155],"As":[156,169],"validation":[157],"populations,":[158],"employ":[160],"three":[161],"independent":[162],"datasets":[163],"following":[164],"same":[166],"experimental":[167],"design.":[168],"result,":[171],"validate":[173],"primarily":[174],"extracted":[175],"prove":[179],"goodness":[181],"gene-gene":[191],"relations.":[193],"Our":[194],"whole":[195],"pipeline":[196],"has":[197],"gathered":[199],"under":[200],"open-source":[201],"software":[202],"could":[204],"be":[205],"easily":[206],"extended":[207],"to":[208],"other":[209],"applications.":[213]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":14},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":2}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
