{"id":"https://openalex.org/W2924760932","doi":"https://doi.org/10.1371/journal.pcbi.1007774","title":"Estimating effective population size changes from preferentially sampled genetic sequences","display_name":"Estimating effective population size changes from preferentially sampled genetic sequences","publication_year":2020,"publication_date":"2020-10-12","ids":{"openalex":"https://openalex.org/W2924760932","doi":"https://doi.org/10.1371/journal.pcbi.1007774","mag":"2924760932","pmid":"https://pubmed.ncbi.nlm.nih.gov/33044955"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1007774","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007774","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007774&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007774&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077878368","display_name":"Michael D. Karcher","orcid":"https://orcid.org/0000-0002-8615-6078"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael D. Karcher","raw_affiliation_strings":["Department of Statistics, University of Washington, Seattle, Washington, U.S.A"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics, University of Washington, Seattle, Washington, U.S.A","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048468015","display_name":"Luiz Max Carvalho","orcid":"https://orcid.org/0000-0001-5736-5578"},"institutions":[{"id":"https://openalex.org/I52325","display_name":"Funda\u00e7\u00e3o Oswaldo Cruz","ror":"https://ror.org/04jhswv08","country_code":"BR","type":"facility","lineage":["https://openalex.org/I52325"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Luiz Max Carvalho","raw_affiliation_strings":["National School of Public Health, Oswaldo Cruz Foundation, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National School of Public Health, Oswaldo Cruz Foundation, Brazil","institution_ids":["https://openalex.org/I52325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039905606","display_name":"Marc A. Suchard","orcid":"https://orcid.org/0000-0001-9818-479X"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marc A. Suchard","raw_affiliation_strings":["Department of Biomathematics, David Geffen School of Medicine at UCLA, University of California, Los Angeles, California, U.S.A","Department of Biostatistics, UCLA Fielding School of Public Health, University of California, Los Angeles, California, U.S.A","Department of Human Genetics, David Geffen School of Medicine at UCLA, University of California, Los Angeles, California, U.S.A"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomathematics, David Geffen School of Medicine at UCLA, University of California, Los Angeles, California, U.S.A","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Biostatistics, UCLA Fielding School of Public Health, University of California, Los Angeles, California, U.S.A","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Department of Human Genetics, David Geffen School of Medicine at UCLA, University of California, Los Angeles, California, U.S.A","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009243392","display_name":"Gytis Dudas","orcid":"https://orcid.org/0000-0002-0227-4158"},"institutions":[{"id":"https://openalex.org/I1326427960","display_name":"Cape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa","ror":"https://ror.org/00wdsp051","country_code":"ZA","type":"nonprofit","lineage":["https://openalex.org/I1326427960","https://openalex.org/I4210089486"]},{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]},{"id":"https://openalex.org/I4210127473","display_name":"Cancer Research Center","ror":"https://ror.org/03fbwjm33","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210127473"]}],"countries":["US","ZA"],"is_corresponding":false,"raw_author_name":"Gytis Dudas","raw_affiliation_strings":["Gothenburg Global Biodiversity Centre (GGBC), Gothenburg, Sweden","Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center"],"raw_orcid":"https://orcid.org/0000-0002-0227-4158","affiliations":[{"raw_affiliation_string":"Gothenburg Global Biodiversity Centre (GGBC), Gothenburg, Sweden","institution_ids":[]},{"raw_affiliation_string":"Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center","institution_ids":["https://openalex.org/I1326427960","https://openalex.org/I4210089486","https://openalex.org/I4210127473"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089671301","display_name":"Vladimir N. Minin","orcid":"https://orcid.org/0000-0002-1917-9288"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Vladimir N. Minin","raw_affiliation_strings":["Department of Statistics, University of California, Irvine, California, U.S.A"],"raw_orcid":"https://orcid.org/0000-0002-1917-9288","affiliations":[{"raw_affiliation_string":"Department of Statistics, University of California, Irvine, California, U.S.A","institution_ids":["https://openalex.org/I204250578"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5089671301"],"corresponding_institution_ids":["https://openalex.org/I204250578"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":2.7632,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.91200721,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"16","issue":"10","first_page":"e1007774","last_page":"e1007774"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10167","display_name":"Influenza Virus Research Studies","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.984000027179718,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/population-size","display_name":"Population size","score":0.7385039329528809},{"id":"https://openalex.org/keywords/coalescent-theory","display_name":"Coalescent theory","score":0.7164751887321472},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.6455132365226746},{"id":"https://openalex.org/keywords/effective-population-size","display_name":"Effective population size","score":0.6345463991165161},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.6154494881629944},{"id":"https://openalex.org/keywords/sampling","display_name":"Sampling (signal processing)","score":0.607528805732727},{"id":"https://openalex.org/keywords/poisson-distribution","display_name":"Poisson distribution","score":0.48889294266700745},{"id":"https://openalex.org/keywords/poisson-sampling","display_name":"Poisson sampling","score":0.4749099016189575},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.4710388481616974},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.4684861898422241},{"id":"https://openalex.org/keywords/econometrics","display_name":"Econometrics","score":0.35119956731796265},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3114129900932312},{"id":"https://openalex.org/keywords/markov-chain-monte-carlo","display_name":"Markov chain Monte Carlo","score":0.27603504061698914},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1355854570865631},{"id":"https://openalex.org/keywords/slice-sampling","display_name":"Slice sampling","score":0.11111822724342346},{"id":"https://openalex.org/keywords/genetic-variation","display_name":"Genetic variation","score":0.08496403694152832}],"concepts":[{"id":"https://openalex.org/C169733012","wikidata":"https://www.wikidata.org/wiki/Q1613416","display_name":"Population size","level":3,"score":0.7385039329528809},{"id":"https://openalex.org/C2554327","wikidata":"https://www.wikidata.org/wiki/Q2698599","display_name":"Coalescent theory","level":4,"score":0.7164751887321472},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.6455132365226746},{"id":"https://openalex.org/C3641667","wikidata":"https://www.wikidata.org/wiki/Q1295959","display_name":"Effective population size","level":4,"score":0.6345463991165161},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.6154494881629944},{"id":"https://openalex.org/C140779682","wikidata":"https://www.wikidata.org/wiki/Q210868","display_name":"Sampling (signal processing)","level":3,"score":0.607528805732727},{"id":"https://openalex.org/C100906024","wikidata":"https://www.wikidata.org/wiki/Q205692","display_name":"Poisson distribution","level":2,"score":0.48889294266700745},{"id":"https://openalex.org/C82152865","wikidata":"https://www.wikidata.org/wiki/Q7208505","display_name":"Poisson sampling","level":5,"score":0.4749099016189575},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.4710388481616974},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.4684861898422241},{"id":"https://openalex.org/C149782125","wikidata":"https://www.wikidata.org/wiki/Q160039","display_name":"Econometrics","level":1,"score":0.35119956731796265},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3114129900932312},{"id":"https://openalex.org/C111350023","wikidata":"https://www.wikidata.org/wiki/Q1191869","display_name":"Markov chain Monte Carlo","level":3,"score":0.27603504061698914},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1355854570865631},{"id":"https://openalex.org/C170593435","wikidata":"https://www.wikidata.org/wiki/Q4128565","display_name":"Slice sampling","level":4,"score":0.11111822724342346},{"id":"https://openalex.org/C68873052","wikidata":"https://www.wikidata.org/wiki/Q349856","display_name":"Genetic variation","level":3,"score":0.08496403694152832},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007251","descriptor_name":"Influenza, Human","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D007251","descriptor_name":"Influenza, Human","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D007251","descriptor_name":"Influenza, Human","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D007251","descriptor_name":"Influenza, Human","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D007251","descriptor_name":"Influenza, Human","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D007251","descriptor_name":"Influenza, Human","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D007251","descriptor_name":"Influenza, Human","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D007251","descriptor_name":"Influenza, Human","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D009975","descriptor_name":"Orthomyxoviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009975","descriptor_name":"Orthomyxoviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009975","descriptor_name":"Orthomyxoviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009975","descriptor_name":"Orthomyxoviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011156","descriptor_name":"Population Density","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011156","descriptor_name":"Population Density","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011156","descriptor_name":"Population Density","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011156","descriptor_name":"Population Density","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011157","descriptor_name":"Population Dynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011157","descriptor_name":"Population Dynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011157","descriptor_name":"Population Dynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011157","descriptor_name":"Population Dynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019142","descriptor_name":"Hemorrhagic Fever, Ebola","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D019142","descriptor_name":"Hemorrhagic Fever, Ebola","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D019142","descriptor_name":"Hemorrhagic Fever, Ebola","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D019142","descriptor_name":"Hemorrhagic Fever, Ebola","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D019142","descriptor_name":"Hemorrhagic Fever, Ebola","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D019142","descriptor_name":"Hemorrhagic Fever, Ebola","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D019142","descriptor_name":"Hemorrhagic Fever, Ebola","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D019142","descriptor_name":"Hemorrhagic Fever, Ebola","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D029043","descriptor_name":"Ebolavirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029043","descriptor_name":"Ebolavirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029043","descriptor_name":"Ebolavirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029043","descriptor_name":"Ebolavirus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1371/journal.pcbi.1007774","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007774","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007774&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:33044955","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33044955","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:arXiv.org:1903.11797","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1903.11797","pdf_url":"https://arxiv.org/pdf/1903.11797","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:RePEc:plo:pcbi00:1007774","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007774","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:a12e8166102741dfb75db7e805a95615","is_oa":true,"landing_page_url":"https://doaj.org/article/a12e8166102741dfb75db7e805a95615","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 16, Iss 10, p e1007774 (2020)","raw_type":"article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt6p3868mc","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/6p3868mc","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS computational biology, vol 16, iss 10","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7580988","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7580988","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1007774","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1007774","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1007774&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1654201635","display_name":null,"funder_award_id":"DMS 1264153","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2147861026","display_name":null,"funder_award_id":"1264153","funder_id":"https://openalex.org/F4320337380","funder_display_name":"Division of Mathematical Sciences"},{"id":"https://openalex.org/G2722875964","display_name":null,"funder_award_id":"U54 GM111274","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G2892454502","display_name":null,"funder_award_id":"R01 AI107034","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3262302131","display_name":null,"funder_award_id":"R01 AI107034","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G5879268890","display_name":null,"funder_award_id":"1264153","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6023218531","display_name":null,"funder_award_id":"R01 AI107034","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8554953897","display_name":null,"funder_award_id":"U54 GM111274","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8776292304","display_name":null,"funder_award_id":"R01 LM012080","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"},{"id":"https://openalex.org/F4320337380","display_name":"Division of Mathematical Sciences","ror":"https://ror.org/051fftw81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2924760932.pdf","grobid_xml":"https://content.openalex.org/works/W2924760932.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W1503883746","https://openalex.org/W1525734744","https://openalex.org/W1589960480","https://openalex.org/W1768287364","https://openalex.org/W1791636287","https://openalex.org/W1915699870","https://openalex.org/W1970129213","https://openalex.org/W1980674207","https://openalex.org/W2031648200","https://openalex.org/W2045730498","https://openalex.org/W2061929543","https://openalex.org/W2098062910","https://openalex.org/W2098232873","https://openalex.org/W2102236644","https://openalex.org/W2102424972","https://openalex.org/W2103667393","https://openalex.org/W2115596355","https://openalex.org/W2125359798","https://openalex.org/W2128429998","https://openalex.org/W2134117233","https://openalex.org/W2141964641","https://openalex.org/W2146602601","https://openalex.org/W2153432740","https://openalex.org/W2156358357","https://openalex.org/W2157001909","https://openalex.org/W2160253520","https://openalex.org/W2166481425","https://openalex.org/W2167740275","https://openalex.org/W2168934042","https://openalex.org/W2178225823","https://openalex.org/W2242437964","https://openalex.org/W2276895023","https://openalex.org/W2336948744","https://openalex.org/W2516104505","https://openalex.org/W2532203913","https://openalex.org/W2764433274","https://openalex.org/W2807308836","https://openalex.org/W2911807712","https://openalex.org/W2950040478","https://openalex.org/W2951878836","https://openalex.org/W2963732842","https://openalex.org/W3026026050","https://openalex.org/W3104308918","https://openalex.org/W4210633230","https://openalex.org/W4253991977","https://openalex.org/W4388322114","https://openalex.org/W6631401015","https://openalex.org/W6674862703"],"related_works":["https://openalex.org/W2103667393","https://openalex.org/W2953115706","https://openalex.org/W3042201913","https://openalex.org/W2961040797","https://openalex.org/W2040155323","https://openalex.org/W2170980706","https://openalex.org/W1877605653","https://openalex.org/W3013529535","https://openalex.org/W3091872977","https://openalex.org/W2924760932"],"abstract_inverted_index":{"Coalescent":[0],"theory":[1],"combined":[2],"with":[3,75],"statistical":[4,46],"modeling":[5,47,140],"allows":[6],"us":[7],"to":[8,78,100,151,160],"estimate":[9],"effective":[10,42,85,109],"population":[11,22,43,52,86,110,154],"size":[12,53,111],"fluctuations":[13],"from":[14,20],"molecular":[15],"sequences":[16,26,63],"of":[17,23,35,48,82,106,128,133,153,156],"individuals":[18],"sampled":[19,28,62],"a":[21,79,143],"interest.":[24],"When":[25],"are":[27],"serially":[29],"through":[30],"time":[31,122],"and":[32,66,113,146,159],"the":[33,36,41,59,83,98,107,120,131,161],"distribution":[34],"sampling":[37,49,68,121],"times":[38,50,69],"depends":[39],"on":[40],"size,":[44],"explicit":[45],"improves":[51],"estimation.":[54],"Previous":[55],"work":[56],"assumed":[57],"that":[58],"genealogy":[60],"relating":[61],"is":[64],"known":[65],"modeled":[67],"as":[70],"an":[71],"inhomogeneous":[72],"Poisson":[73],"process":[74],"log-intensity":[76],"equal":[77],"linear":[80],"function":[81],"log-transformed":[84],"size.":[87],"We":[88,136],"improve":[89,119],"this":[90],"approach":[91],"in":[92,130,166],"two":[93],"ways.":[94],"First,":[95],"we":[96,118],"extend":[97],"method":[99],"allow":[101],"for":[102],"joint":[103],"Bayesian":[104],"estimation":[105],"genealogy,":[108],"trajectory,":[112],"other":[114],"model":[115,123],"parameters.":[116],"Next,":[117],"by":[124],"incorporating":[125],"additional":[126],"sources":[127],"information":[129],"form":[132],"time-varying":[134],"covariates.":[135],"validate":[137],"our":[138,148],"new":[139,149],"framework":[141],"using":[142],"simulation":[144],"study":[145],"apply":[147],"methodology":[150],"analyses":[152],"dynamics":[155],"seasonal":[157],"influenza":[158],"recent":[162],"Ebola":[163],"virus":[164],"outbreak":[165],"West":[167],"Africa.":[168]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":2}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
