{"id":"https://openalex.org/W2901954177","doi":"https://doi.org/10.1371/journal.pcbi.1006650","title":"BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis","display_name":"BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis","publication_year":2019,"publication_date":"2019-04-08","ids":{"openalex":"https://openalex.org/W2901954177","doi":"https://doi.org/10.1371/journal.pcbi.1006650","mag":"2901954177","pmid":"https://pubmed.ncbi.nlm.nih.gov/30958812"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1006650","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006650","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006650&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006650&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027519870","display_name":"Remco Bouckaert","orcid":"https://orcid.org/0000-0001-6765-3813"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]},{"id":"https://openalex.org/I4210161060","display_name":"Max Planck Institute for the Science of Human History","ror":"https://ror.org/05mjrzy91","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210161060"]}],"countries":["DE","NZ"],"is_corresponding":true,"raw_author_name":"Remco Bouckaert","raw_affiliation_strings":["Centre of Computational Evolution, University of Auckland, Auckland, New Zealand","Max Planck Institute for the Science of Human History, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Centre of Computational Evolution, University of Auckland, Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895"]},{"raw_affiliation_string":"Max Planck Institute for the Science of Human History, Jena, Germany","institution_ids":["https://openalex.org/I4210161060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088841943","display_name":"Timothy G. Vaughan","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Timothy G. Vaughan","raw_affiliation_strings":["ETH Z\u00fcrich, Department of Biosystems Science and Engineering, 4058 Basel, Switzerland","Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"ETH Z\u00fcrich, Department of Biosystems Science and Engineering, 4058 Basel, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066707065","display_name":"Jo\u00eblle Barido\u2010Sottani","orcid":"https://orcid.org/0000-0002-5220-5468"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Jo\u00eblle Barido-Sottani","raw_affiliation_strings":["ETH Z\u00fcrich, Department of Biosystems Science and Engineering, 4058 Basel, Switzerland","Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"ETH Z\u00fcrich, Department of Biosystems Science and Engineering, 4058 Basel, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051736895","display_name":"Sebasti\u00e1n Duch\u00eane","orcid":"https://orcid.org/0000-0002-2863-0907"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"The University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Sebasti\u00e1n Duch\u00eane","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, University of Melbourne, Melbourne, Victoria, Australia"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, University of Melbourne, Melbourne, Victoria, Australia","institution_ids":["https://openalex.org/I165779595"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070262421","display_name":"Mathieu Fourment","orcid":"https://orcid.org/0000-0001-8153-9822"},"institutions":[{"id":"https://openalex.org/I114017466","display_name":"University of Technology Sydney","ror":"https://ror.org/03f0f6041","country_code":"AU","type":"education","lineage":["https://openalex.org/I114017466"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Mathieu Fourment","raw_affiliation_strings":["ithree institute, University of Technology Sydney, Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"ithree institute, University of Technology Sydney, Sydney, Australia","institution_ids":["https://openalex.org/I114017466"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040438451","display_name":"Alexandra Gavryushkina","orcid":"https://orcid.org/0000-0002-1885-1108"},"institutions":[{"id":"https://openalex.org/I80281795","display_name":"University of Otago","ror":"https://ror.org/01jmxt844","country_code":"NZ","type":"education","lineage":["https://openalex.org/I80281795"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Alexandra Gavryushkina","raw_affiliation_strings":["Department of Biochemistry, University of Otago, Dunedin 9016, New Zealand"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Otago, Dunedin 9016, New Zealand","institution_ids":["https://openalex.org/I80281795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088763701","display_name":"Joseph Heled","orcid":"https://orcid.org/0000-0002-2403-7997"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Joseph Heled","raw_affiliation_strings":["Independent researcher, Auckland, New Zealand"],"affiliations":[{"raw_affiliation_string":"Independent researcher, Auckland, New Zealand","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060904049","display_name":"Graham Jones","orcid":"https://orcid.org/0000-0002-9686-5871"},"institutions":[{"id":"https://openalex.org/I881427289","display_name":"University of Gothenburg","ror":"https://ror.org/01tm6cn81","country_code":"SE","type":"education","lineage":["https://openalex.org/I881427289"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Graham Jones","raw_affiliation_strings":["Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, SE 405 30 G\u00f6teborg, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Biological and Environmental Sciences, University of Gothenburg, Box 461, SE 405 30 G\u00f6teborg, Sweden","institution_ids":["https://openalex.org/I881427289"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025504717","display_name":"Denise K\u00fchnert","orcid":"https://orcid.org/0000-0002-5657-018X"},"institutions":[{"id":"https://openalex.org/I4210161060","display_name":"Max Planck Institute for the Science of Human History","ror":"https://ror.org/05mjrzy91","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210161060"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Denise K\u00fchnert","raw_affiliation_strings":["Max Planck Institute for the Science of Human History, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Max Planck Institute for the Science of Human History, Jena, Germany","institution_ids":["https://openalex.org/I4210161060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030621715","display_name":"Nicola De Maio","orcid":"https://orcid.org/0000-0002-1776-8564"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nicola De Maio","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridgeshire, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridgeshire, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033256023","display_name":"Michael Matschiner","orcid":"https://orcid.org/0000-0003-4741-3884"},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Michael Matschiner","raw_affiliation_strings":["Department of Environmental Sciences, University of Basel, 4051 Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Environmental Sciences, University of Basel, 4051 Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059396953","display_name":"F\u00e1bio K. Mendes","orcid":"https://orcid.org/0000-0001-6204-7208"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"F\u00e1bio K. Mendes","raw_affiliation_strings":["Centre of Computational Evolution, University of Auckland, Auckland, New Zealand"],"affiliations":[{"raw_affiliation_string":"Centre of Computational Evolution, University of Auckland, Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084057376","display_name":"Nicola F. M\u00fcller","orcid":"https://orcid.org/0000-0002-2927-1002"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Nicola F. M\u00fcller","raw_affiliation_strings":["ETH Z\u00fcrich, Department of Biosystems Science and Engineering, 4058 Basel, Switzerland","Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"ETH Z\u00fcrich, Department of Biosystems Science and Engineering, 4058 Basel, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010915538","display_name":"Huw A. Ogilvie","orcid":"https://orcid.org/0000-0003-1589-6885"},"institutions":[{"id":"https://openalex.org/I74775410","display_name":"Rice University","ror":"https://ror.org/008zs3103","country_code":"US","type":"education","lineage":["https://openalex.org/I74775410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Huw A. Ogilvie","raw_affiliation_strings":["Department of Computer Science, Rice University, Houston, TX 77005-1892, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Rice University, Houston, TX 77005-1892, USA","institution_ids":["https://openalex.org/I74775410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007000185","display_name":"Louis du Plessis","orcid":"https://orcid.org/0000-0003-0352-6289"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Louis du Plessis","raw_affiliation_strings":["Department of Zoology, University of Oxford, Oxford, OX1 3PS, UK"],"affiliations":[{"raw_affiliation_string":"Department of Zoology, University of Oxford, Oxford, OX1 3PS, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028793032","display_name":"Alex Popinga","orcid":"https://orcid.org/0000-0002-0152-5728"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Alex Popinga","raw_affiliation_strings":["Centre of Computational Evolution, University of Auckland, Auckland, New Zealand"],"affiliations":[{"raw_affiliation_string":"Centre of Computational Evolution, University of Auckland, Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083534383","display_name":"Andrew Rambaut","orcid":"https://orcid.org/0000-0003-4337-3707"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andrew Rambaut","raw_affiliation_strings":["Institute of Evolutionary Biology, University of Edinburgh, Ashworth Laboratories, Edinburgh, EH9 3FL UK"],"affiliations":[{"raw_affiliation_string":"Institute of Evolutionary Biology, University of Edinburgh, Ashworth Laboratories, Edinburgh, EH9 3FL UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058082988","display_name":"David A. Rasmussen","orcid":"https://orcid.org/0000-0001-9457-7561"},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Rasmussen","raw_affiliation_strings":["Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC 27695, USA"],"affiliations":[{"raw_affiliation_string":"Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015957442","display_name":"Igor Siveroni","orcid":"https://orcid.org/0000-0003-2595-3062"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Igor Siveroni","raw_affiliation_strings":["Department of Infectious Disease Epidemiology, Imperial College London, Norfolk Place, W2 1PG, UK"],"affiliations":[{"raw_affiliation_string":"Department of Infectious Disease Epidemiology, Imperial College London, Norfolk Place, W2 1PG, UK","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039905606","display_name":"Marc A. Suchard","orcid":"https://orcid.org/0000-0001-9818-479X"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marc A. Suchard","raw_affiliation_strings":["Department of Biomathematics, David Geffen School of Medicine, University of California, Los Angeles, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomathematics, David Geffen School of Medicine, University of California, Los Angeles, CA, USA","institution_ids":["https://openalex.org/I161318765"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004389745","display_name":"Chieh\u2010Hsi Wu","orcid":"https://orcid.org/0000-0001-9386-725X"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Chieh-Hsi Wu","raw_affiliation_strings":["Department of Statistics, University of Oxford, OX1 3LB, UK"],"affiliations":[{"raw_affiliation_string":"Department of Statistics, University of Oxford, OX1 3LB, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002673153","display_name":"Dong Xie","orcid":"https://orcid.org/0000-0003-0878-3380"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":false,"raw_author_name":"Dong Xie","raw_affiliation_strings":["Centre of Computational Evolution, University of Auckland, Auckland, New Zealand"],"affiliations":[{"raw_affiliation_string":"Centre of Computational Evolution, University of Auckland, Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045272233","display_name":"Chi Zhang","orcid":"https://orcid.org/0000-0001-6009-5273"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210086287","display_name":"Institute of Vertebrate Paleontology and Paleoanthropology","ror":"https://ror.org/0000pmw59","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210086287"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chi Zhang","raw_affiliation_strings":["Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210086287","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055449742","display_name":"Tanja Stadler","orcid":"https://orcid.org/0000-0001-6431-535X"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Tanja Stadler","raw_affiliation_strings":["ETH Z\u00fcrich, Department of Biosystems Science and Engineering, 4058 Basel, Switzerland","Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"ETH Z\u00fcrich, Department of Biosystems Science and Engineering, 4058 Basel, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079724732","display_name":"Alexei J. Drummond","orcid":"https://orcid.org/0000-0003-4454-2576"},"institutions":[{"id":"https://openalex.org/I154130895","display_name":"University of Auckland","ror":"https://ror.org/03b94tp07","country_code":"NZ","type":"education","lineage":["https://openalex.org/I154130895"]}],"countries":["NZ"],"is_corresponding":true,"raw_author_name":"Alexei J. Drummond","raw_affiliation_strings":["Centre of Computational Evolution, University of Auckland, Auckland, New Zealand"],"affiliations":[{"raw_affiliation_string":"Centre of Computational Evolution, University of Auckland, Auckland, New Zealand","institution_ids":["https://openalex.org/I154130895"]}]}],"institutions":[],"countries_distinct_count":8,"institutions_distinct_count":25,"corresponding_author_ids":["https://openalex.org/A5027519870","https://openalex.org/A5079724732"],"corresponding_institution_ids":["https://openalex.org/I154130895","https://openalex.org/I4210161060"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":178.0533,"has_fulltext":true,"cited_by_count":4605,"citation_normalized_percentile":{"value":0.9999479,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"15","issue":"4","first_page":"e1006650","last_page":"e1006650"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6489442586898804},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6266711950302124},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5901833176612854},{"id":"https://openalex.org/keywords/hierarchy","display_name":"Hierarchy","score":0.5163037180900574},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.4909992516040802},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.45092201232910156},{"id":"https://openalex.org/keywords/software-development","display_name":"Software development","score":0.43283161520957947},{"id":"https://openalex.org/keywords/pace","display_name":"Pace","score":0.4106293320655823},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3623112440109253},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2990652024745941},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.1138608455657959}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6489442586898804},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6266711950302124},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5901833176612854},{"id":"https://openalex.org/C31170391","wikidata":"https://www.wikidata.org/wiki/Q188619","display_name":"Hierarchy","level":2,"score":0.5163037180900574},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.4909992516040802},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.45092201232910156},{"id":"https://openalex.org/C529173508","wikidata":"https://www.wikidata.org/wiki/Q638608","display_name":"Software development","level":3,"score":0.43283161520957947},{"id":"https://openalex.org/C2777526511","wikidata":"https://www.wikidata.org/wiki/Q691543","display_name":"Pace","level":2,"score":0.4106293320655823},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3623112440109253},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2990652024745941},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.1138608455657959},{"id":"https://openalex.org/C34447519","wikidata":"https://www.wikidata.org/wiki/Q179522","display_name":"Market economy","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":20,"locations":[{"id":"doi:10.1371/journal.pcbi.1006650","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006650","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006650&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:30958812","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30958812","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/341718","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/341718","pdf_url":null,"source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology, 15 (4)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:www.zora.uzh.ch:171091","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401281","display_name":"Zurich Open Repository and Archive (University of Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I202697423","host_organization_name":"University of Zurich","host_organization_lineage":["https://openalex.org/I202697423"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bouckaert, Remco; Vaughan, Timothy G; Barido-Sottani, Jo\u00eblle; Duch\u00eane, Sebasti\u00e1n; Fourment, Mathieu; Gavryushkina, Alexandra; Heled, Joseph; Jones, Graham; K\u00fchnert, Denise; De Maio, Nicola; Matschiner, Michael; Mendes, F\u00e1bio K; M\u00fcller, Nicola F; Ogilvie, Huw A; du Plessis, Louis; Popinga, Alex; Rambaut, Andrew; Rasmussen, David; Siveroni, Igor; Suchard, Marc A; Wu, Chieh-Hsi; Xie, Dong; Zhang, Chi; Stadler, Tanja; Drummond, Alexei J  (2019). BEAST 2.5: An Advanced Software Platform for Bayesian Evolutionary Analysis.  PLoS Computational Biology, 15(4):e1006650.","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:jupiter.its.unimelb.edu.au:11343/250736","is_oa":true,"landing_page_url":"http://hdl.handle.net/11343/250736","pdf_url":"http://hdl.handle.net/11343/250736","source":{"id":"https://openalex.org/S4377196259","display_name":"Minerva Access (University of Melbourne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165779595","host_organization_name":"The University of Melbourne","host_organization_lineage":["https://openalex.org/I165779595"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pure.ed.ac.uk:publications/deceb8a9-b068-44ef-b364-4fc9d99cf2d1","is_oa":true,"landing_page_url":"https://hdl.handle.net/20.500.11820/deceb8a9-b068-44ef-b364-4fc9d99cf2d1","pdf_url":"https://www.research.ed.ac.uk/files/89301871/BEAST_2.5_PUB_OA_CC_BY_journal.pcbi.1006650.pdf","source":{"id":"https://openalex.org/S4306400321","display_name":"Edinburgh Research Explorer (University of Edinburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I98677209","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/I98677209"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bouckaert, R, Vaughan, T G, Barido-Sottani, J, Duch\u00eane, S, Fourment, M, Gavryushkina, A, Heled, J, Jones, G, K\u00fchnert, D, De Maio, N, Matschiner, M, Mendes, F K, M\u00fcller, N F, Ogilvie, H A, du Plessis, L, Popinga, A, Rambaut, A, Rasmussen, D, Siveroni, I, Suchard, M A, Wu, C-H, Xie, D, Zhang, C, Stadler, T & Drummond, A J 2019, 'BEAST 2.5 : An advanced software platform for Bayesian evolutionary analysis', PLoS Computational Biology, vol. 15, no. 4, pp. e1006650. https://doi.org/10.1371/journal.pcbi.1006650","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:RePEc:plo:pcbi00:1006650","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006650","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:a8f0a0f9405c41538efbc3deca7a85e2","is_oa":true,"landing_page_url":"https://doaj.org/article/a8f0a0f9405c41538efbc3deca7a85e2","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 15, Iss 4, p e1006650 (2019)","raw_type":"article"},{"id":"pmh:oai:eprints.soton.ac.uk:437893","is_oa":false,"landing_page_url":"https://eprints.soton.ac.uk/437893/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401019","display_name":"ePrints Soton (University of Southampton)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I43439940","host_organization_name":"University of Southampton","host_organization_lineage":["https://openalex.org/I43439940"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt6992c7h6","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/6992c7h6","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS computational biology, vol 15, iss 4","raw_type":"article"},{"id":"pmh:oai:opus.lib.uts.edu.au:10453/129447","is_oa":false,"landing_page_url":"http://hdl.handle.net/10453/129447","pdf_url":null,"source":{"id":"https://openalex.org/S4306401357","display_name":"UTS ePRESS (University of Technology Sydney)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114017466","host_organization_name":"University of Technology Sydney","host_organization_lineage":["https://openalex.org/I114017466"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:opus.lib.uts.edu.au:10453/133818","is_oa":true,"landing_page_url":"http://hdl.handle.net/10453/133818","pdf_url":null,"source":{"id":"https://openalex.org/S4306401357","display_name":"UTS ePRESS (University of Technology Sydney)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114017466","host_organization_name":"University of Technology Sydney","host_organization_lineage":["https://openalex.org/I114017466"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6472827","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6472827","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:pure.ed.ac.uk:openaire/deceb8a9-b068-44ef-b364-4fc9d99cf2d1","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/deceb8a9-b068-44ef-b364-4fc9d99cf2d1","pdf_url":null,"source":{"id":"https://openalex.org/S4306400321","display_name":"Edinburgh Research Explorer (University of Edinburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I98677209","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/I98677209"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bouckaert, R, Vaughan, T G, Barido-Sottani, J, Duch\u00eane, S, Fourment, M, Gavryushkina, A, Heled, J, Jones, G, K\u00fchnert, D, De Maio, N, Matschiner, M, Mendes, F K, M\u00fcller, N F, Ogilvie, H A, du Plessis, L, Popinga, A, Rambaut, A, Rasmussen, D, Siveroni, I, Suchard, M A, Wu, C-H, Xie, D, Zhang, C, Stadler, T & Drummond, A J 2019, 'BEAST 2.5 : An advanced software platform for Bayesian evolutionary analysis', PLoS Computational Biology, vol. 15, no. 4, pp. e1006650. https://doi.org/10.1371/journal.pcbi.1006650","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.mpg.de:item_3055286","is_oa":true,"landing_page_url":"http://hdl.handle.net/21.11116/0000-0003-9F7C-0","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pure.mpg.de:item_3266570","is_oa":true,"landing_page_url":"http://hdl.handle.net/21.11116/0000-0007-7AEE-5","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:researchspace.auckland.ac.nz:2292/48713","is_oa":true,"landing_page_url":"http://hdl.handle.net/2292/48713","pdf_url":null,"source":{"id":"https://openalex.org/S7407055463","display_name":"ResearchSpace (University of Auckland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I154130895","host_organization_name":"University of Auckland","host_organization_lineage":["https://openalex.org/I154130895"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:spiral.imperial.ac.uk:10044/1/79338","is_oa":true,"landing_page_url":"http://hdl.handle.net/10044/1/79338","pdf_url":null,"source":{"id":"https://openalex.org/S4306401396","display_name":"Spiral (Imperial College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I47508984","host_organization_name":"Imperial College London","host_organization_lineage":["https://openalex.org/I47508984"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"28","raw_type":"Journal Article"},{"id":"doi:10.3929/ethz-b-000341718","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-b-000341718","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"},{"id":"doi:10.5167/uzh-171091","is_oa":true,"landing_page_url":"https://doi.org/10.5167/uzh-171091","pdf_url":null,"source":{"id":"https://openalex.org/S7407051291","display_name":"Universit\u00e4t Z\u00fcrich, ZORA","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1006650","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1006650","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006650&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1013137589","display_name":null,"funder_award_id":"Marsden","funder_id":"https://openalex.org/F4320320774","funder_display_name":"Royal Society Te Ap\u0101rangi"},{"id":"https://openalex.org/G1093674026","display_name":null,"funder_award_id":"agreement","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G1118366782","display_name":null,"funder_award_id":"U01 GM110749","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1593513447","display_name":"Impr\u00e4gnierung von Schnittholz der Tanne (Abies alba) Streuung der Tr\u00e4nkbarkeit und Diagnose-Methode zur Impr\u00e4gnierqualit\u00e4t","funder_award_id":"11074","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G1879016701","display_name":null,"funder_award_id":"CR32I3_166258","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G2313485910","display_name":"Pathogen Phylodynamics: Unifying Evolution, Infection and Immunity","funder_award_id":"614725","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2446588512","display_name":null,"funder_award_id":"16-UOA-277","funder_id":"https://openalex.org/F4320335369","funder_display_name":"Marsden Fund"},{"id":"https://openalex.org/G311130338","display_name":null,"funder_award_id":"16-UOA-277","funder_id":"https://openalex.org/F4320320774","funder_display_name":"Royal Society Te Ap\u0101rangi"},{"id":"https://openalex.org/G3981126665","display_name":null,"funder_award_id":"Seventh Framework Programme","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4023966104","display_name":null,"funder_award_id":"CR32I3","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G4247904154","display_name":null,"funder_award_id":"European Research Council","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G4449899180","display_name":"Eigenschaften des Schweizerholzes","funder_award_id":"10749","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G5921281487","display_name":null,"funder_award_id":"number","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6734644989","display_name":"Diversity through time in adaptive radiations","funder_award_id":"138680","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G6755165505","display_name":null,"funder_award_id":"award","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7095178771","display_name":"Die Kausalrelation als externe, fundierte oder interne Relation. Eine Analyse der neueren Kausalit\u00e4tsdebatte.","funder_award_id":"61472","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G7272220648","display_name":null,"funder_award_id":"GM110749","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7314234705","display_name":null,"funder_award_id":"335529","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8214627994","display_name":"Beitrag im Rahmen des MD-PhD-Programmes Is an Indreased mRNA Stability Involved in Human Tumours?","funder_award_id":"66258","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G8413838880","display_name":"Ver\u00e4nderung der Kontrollmeinung.","funder_award_id":"33552","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G8461275021","display_name":null,"funder_award_id":"PBBSP3-138680","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8623476424","display_name":"System analysis of seasonal Influenza - virus transmission and evolution in the City of Basel","funder_award_id":"166258","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320774","display_name":"Royal Society Te Ap\u0101rangi","ror":"https://ror.org/04tajb587"},{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320322434","display_name":"Max-Planck-Gesellschaft","ror":"https://ror.org/01hhn8329"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320335369","display_name":"Marsden Fund","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2901954177.pdf","grobid_xml":"https://content.openalex.org/works/W2901954177.grobid-xml"},"referenced_works_count":140,"referenced_works":["https://openalex.org/W420957490","https://openalex.org/W575187073","https://openalex.org/W1070000046","https://openalex.org/W1136597839","https://openalex.org/W1542258599","https://openalex.org/W1562680357","https://openalex.org/W1708072900","https://openalex.org/W1841429278","https://openalex.org/W1915699870","https://openalex.org/W1920973730","https://openalex.org/W1934545424","https://openalex.org/W1979100126","https://openalex.org/W1983368215","https://openalex.org/W1984454437","https://openalex.org/W1987423081","https://openalex.org/W1990119892","https://openalex.org/W1994775902","https://openalex.org/W2007593785","https://openalex.org/W2009505947","https://openalex.org/W2026062398","https://openalex.org/W2030049522","https://openalex.org/W2039879168","https://openalex.org/W2045656233","https://openalex.org/W2052432722","https://openalex.org/W2056826949","https://openalex.org/W2081587468","https://openalex.org/W2088267428","https://openalex.org/W2091705028","https://openalex.org/W2094939159","https://openalex.org/W2095897941","https://openalex.org/W2096714129","https://openalex.org/W2098524338","https://openalex.org/W2099459260","https://openalex.org/W2099545251","https://openalex.org/W2103148043","https://openalex.org/W2103601574","https://openalex.org/W2106811293","https://openalex.org/W2107608009","https://openalex.org/W2110835349","https://openalex.org/W2115596355","https://openalex.org/W2115889818","https://openalex.org/W2117761900","https://openalex.org/W2118048521","https://openalex.org/W2118182406","https://openalex.org/W2122082385","https://openalex.org/W2122980269","https://openalex.org/W2123547737","https://openalex.org/W2125241803","https://openalex.org/W2127964182","https://openalex.org/W2129928578","https://openalex.org/W2131961145","https://openalex.org/W2133320142","https://openalex.org/W2135869163","https://openalex.org/W2137683719","https://openalex.org/W2139050004","https://openalex.org/W2139166200","https://openalex.org/W2139871526","https://openalex.org/W2142046204","https://openalex.org/W2143497561","https://openalex.org/W2146442942","https://openalex.org/W2148301044","https://openalex.org/W2148723086","https://openalex.org/W2148963653","https://openalex.org/W2150508312","https://openalex.org/W2151062029","https://openalex.org/W2153587490","https://openalex.org/W2159597448","https://openalex.org/W2159816280","https://openalex.org/W2160253520","https://openalex.org/W2160364329","https://openalex.org/W2165933771","https://openalex.org/W2167709329","https://openalex.org/W2168505578","https://openalex.org/W2169505290","https://openalex.org/W2180795200","https://openalex.org/W2184524737","https://openalex.org/W2289619055","https://openalex.org/W2294528210","https://openalex.org/W2307227738","https://openalex.org/W2334380117","https://openalex.org/W2339028552","https://openalex.org/W2345610960","https://openalex.org/W2408731419","https://openalex.org/W2408898951","https://openalex.org/W2475459597","https://openalex.org/W2492973857","https://openalex.org/W2507252565","https://openalex.org/W2508978505","https://openalex.org/W2509528234","https://openalex.org/W2511721726","https://openalex.org/W2518542680","https://openalex.org/W2520325427","https://openalex.org/W2559847974","https://openalex.org/W2566768616","https://openalex.org/W2571173152","https://openalex.org/W2605738321","https://openalex.org/W2618950397","https://openalex.org/W2624520790","https://openalex.org/W2726578143","https://openalex.org/W2743096677","https://openalex.org/W2753988522","https://openalex.org/W2765934538","https://openalex.org/W2767392367","https://openalex.org/W2768076146","https://openalex.org/W2786196765","https://openalex.org/W2791316896","https://openalex.org/W2792234807","https://openalex.org/W2794194100","https://openalex.org/W2794619758","https://openalex.org/W2807308836","https://openalex.org/W2808372239","https://openalex.org/W2808485750","https://openalex.org/W2897412157","https://openalex.org/W2944032254","https://openalex.org/W2949247626","https://openalex.org/W2949322686","https://openalex.org/W2950040478","https://openalex.org/W2950720234","https://openalex.org/W2950847777","https://openalex.org/W2951002538","https://openalex.org/W2951214599","https://openalex.org/W2951531074","https://openalex.org/W2951785084","https://openalex.org/W2952663165","https://openalex.org/W2952712909","https://openalex.org/W2967450157","https://openalex.org/W2987904511","https://openalex.org/W3098202346","https://openalex.org/W3157067284","https://openalex.org/W3172012702","https://openalex.org/W4210357115","https://openalex.org/W4210633230","https://openalex.org/W4210722842","https://openalex.org/W4230357098","https://openalex.org/W4243722672","https://openalex.org/W4248681815","https://openalex.org/W4285719527","https://openalex.org/W4299863973","https://openalex.org/W6616522977","https://openalex.org/W6749321808"],"related_works":["https://openalex.org/W2386723501","https://openalex.org/W2387879414","https://openalex.org/W2390304029","https://openalex.org/W2354923724","https://openalex.org/W2146830340","https://openalex.org/W2377101853","https://openalex.org/W2362180844","https://openalex.org/W2105573916","https://openalex.org/W2378405797","https://openalex.org/W4288601434"],"abstract_inverted_index":{"Elaboration":[0],"of":[1,21,25,48,91,165,185],"Bayesian":[2],"phylogenetic":[3],"inference":[4],"methods":[5],"has":[6],"continued":[7],"at":[8],"pace":[9],"in":[10,17,108,121,169,189],"recent":[11,191],"years":[12,158],"with":[13,127],"major":[14,118,166],"new":[15,167],"advances":[16],"nearly":[18],"all":[19,68],"aspects":[20],"the":[22,170,182,186,190],"joint":[23,74],"modelling":[24,142],"evolutionary":[26,34],"data.":[27],"It":[28],"is":[29,76,115,146],"increasingly":[30,116],"appreciated":[31],"that":[32,87,178],"some":[33],"questions":[35],"can":[36,95],"only":[37],"be":[38,96],"adequately":[39],"answered":[40],"by":[41],"combining":[42],"evidence":[43],"from":[44,130],"multiple":[45],"independent":[46],"sources":[47],"data,":[49,56],"including":[50],"genome":[51],"sequences,":[52],"sampling":[53],"dates,":[54,58],"phenotypic":[55],"radiocarbon":[57],"fossil":[59],"occurrences,":[60],"and":[61,81,125,135,140,152,175],"biogeographic":[62],"range":[63],"information":[64],"among":[65],"others.":[66],"Including":[67],"relevant":[69],"data":[70],"into":[71,98],"a":[72,99,105,117,163],"single":[73],"model":[75,101,176],"very":[77],"challenging":[78],"both":[79],"conceptually":[80],"computationally.":[82],"Advanced":[83],"computational":[84,149],"software":[85,113,132,150],"packages":[86],"allow":[88],"robust":[89],"development":[90,134],"compatible":[92],"(sub-)models":[93],"which":[94],"composed":[97],"full":[100],"hierarchy":[102,177],"have":[103,179],"played":[104],"key":[106],"role":[107],"these":[109],"developments.":[110],"Developing":[111],"such":[112,148],"frameworks":[114],"scientific":[119],"activity":[120],"its":[122],"own":[123],"right,":[124],"comes":[126],"specific":[128],"challenges,":[129],"practical":[131],"design,":[133],"engineering":[136],"challenges":[137],"to":[138],"statistical":[139],"conceptual":[141],"challenges.":[143],"BEAST":[144,171],"2":[145,172],"one":[147],"platform,":[151],"was":[153],"first":[154,183],"announced":[155],"over":[156],"4":[157],"ago.":[159],"Here":[160],"we":[161],"describe":[162],"series":[164],"developments":[168],"core":[173],"platform":[174],"occurred":[180],"since":[181],"release":[184],"software,":[187],"culminating":[188],"2.5":[192],"release.":[193]},"counts_by_year":[{"year":2026,"cited_by_count":212},{"year":2025,"cited_by_count":796},{"year":2024,"cited_by_count":789},{"year":2023,"cited_by_count":735},{"year":2022,"cited_by_count":803},{"year":2021,"cited_by_count":703},{"year":2020,"cited_by_count":501},{"year":2019,"cited_by_count":62},{"year":2018,"cited_by_count":2},{"year":2014,"cited_by_count":2}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
