{"id":"https://openalex.org/W2515176360","doi":"https://doi.org/10.1371/journal.pcbi.1004751","title":"metagene Profiles Analyses Reveal Regulatory Element\u2019s Factor-Specific Recruitment Patterns","display_name":"metagene Profiles Analyses Reveal Regulatory Element\u2019s Factor-Specific Recruitment Patterns","publication_year":2016,"publication_date":"2016-08-18","ids":{"openalex":"https://openalex.org/W2515176360","doi":"https://doi.org/10.1371/journal.pcbi.1004751","mag":"2515176360","pmid":"https://pubmed.ncbi.nlm.nih.gov/27538250"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1004751","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004751","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004751&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004751&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017167585","display_name":"Charles Joly Beauparlant","orcid":null},"institutions":[{"id":"https://openalex.org/I4210139308","display_name":"Centre hospitalier de l'Universit\u00e9 Laval","ror":"https://ror.org/041v96n47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I4210139308"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Charles Joly Beauparlant","raw_affiliation_strings":["Centre de Recherche du CHU de Qu\u00e9bec - Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada","D\u00e9partement de M\u00e9decine Mol\u00e9culaire, Facult\u00e9 de m\u00e9decine, Qu\u00e9bec, Canada"],"affiliations":[{"raw_affiliation_string":"Centre de Recherche du CHU de Qu\u00e9bec - Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada","institution_ids":["https://openalex.org/I4210139308"]},{"raw_affiliation_string":"D\u00e9partement de M\u00e9decine Mol\u00e9culaire, Facult\u00e9 de m\u00e9decine, Qu\u00e9bec, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023222095","display_name":"Fabien C. Lamaze","orcid":"https://orcid.org/0000-0002-6695-7548"},"institutions":[{"id":"https://openalex.org/I4210139308","display_name":"Centre hospitalier de l'Universit\u00e9 Laval","ror":"https://ror.org/041v96n47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I4210139308"]},{"id":"https://openalex.org/I43406934","display_name":"Universit\u00e9 Laval","ror":"https://ror.org/04sjchr03","country_code":"CA","type":"education","lineage":["https://openalex.org/I43406934"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Fabien C. Lamaze","raw_affiliation_strings":["Centre de Recherche du CHU de Qu\u00e9bec - Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada","Centre de Recherche sur le Cancer de l'Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada"],"affiliations":[{"raw_affiliation_string":"Centre de Recherche du CHU de Qu\u00e9bec - Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada","institution_ids":["https://openalex.org/I4210139308"]},{"raw_affiliation_string":"Centre de Recherche sur le Cancer de l'Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada","institution_ids":["https://openalex.org/I43406934"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026873744","display_name":"Astrid Desch\u00eanes","orcid":"https://orcid.org/0000-0001-7846-6749"},"institutions":[{"id":"https://openalex.org/I4210139308","display_name":"Centre hospitalier de l'Universit\u00e9 Laval","ror":"https://ror.org/041v96n47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I4210139308"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Astrid Desch\u00eanes","raw_affiliation_strings":["Centre de Recherche du CHU de Qu\u00e9bec - Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada"],"affiliations":[{"raw_affiliation_string":"Centre de Recherche du CHU de Qu\u00e9bec - Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada","institution_ids":["https://openalex.org/I4210139308"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052955917","display_name":"Rawane Samb","orcid":null},"institutions":[{"id":"https://openalex.org/I4210139308","display_name":"Centre hospitalier de l'Universit\u00e9 Laval","ror":"https://ror.org/041v96n47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I4210139308"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Rawane Samb","raw_affiliation_strings":["Centre de Recherche du CHU de Qu\u00e9bec - Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada"],"affiliations":[{"raw_affiliation_string":"Centre de Recherche du CHU de Qu\u00e9bec - Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada","institution_ids":["https://openalex.org/I4210139308"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087199555","display_name":"Audrey Lema\u00e7on","orcid":"https://orcid.org/0000-0002-1817-7029"},"institutions":[{"id":"https://openalex.org/I4210139308","display_name":"Centre hospitalier de l'Universit\u00e9 Laval","ror":"https://ror.org/041v96n47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I4210139308"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Audrey Lema\u00e7on","raw_affiliation_strings":["Centre de Recherche du CHU de Qu\u00e9bec - Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada"],"affiliations":[{"raw_affiliation_string":"Centre de Recherche du CHU de Qu\u00e9bec - Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada","institution_ids":["https://openalex.org/I4210139308"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080194104","display_name":"Pascal Belleau","orcid":"https://orcid.org/0000-0002-0802-1071"},"institutions":[{"id":"https://openalex.org/I4210139308","display_name":"Centre hospitalier de l'Universit\u00e9 Laval","ror":"https://ror.org/041v96n47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I4210139308"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Pascal Belleau","raw_affiliation_strings":["Centre de Recherche du CHU de Qu\u00e9bec - Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada"],"affiliations":[{"raw_affiliation_string":"Centre de Recherche du CHU de Qu\u00e9bec - Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada","institution_ids":["https://openalex.org/I4210139308"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071651857","display_name":"Steve Bilodeau","orcid":"https://orcid.org/0000-0002-9799-3832"},"institutions":[{"id":"https://openalex.org/I4210139308","display_name":"Centre hospitalier de l'Universit\u00e9 Laval","ror":"https://ror.org/041v96n47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I4210139308"]},{"id":"https://openalex.org/I43406934","display_name":"Universit\u00e9 Laval","ror":"https://ror.org/04sjchr03","country_code":"CA","type":"education","lineage":["https://openalex.org/I43406934"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Steve Bilodeau","raw_affiliation_strings":["Centre de Recherche du CHU de Qu\u00e9bec - Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada","Centre de Recherche sur le Cancer de l'Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada","D\u00e9partement de Biologie Mol\u00e9culaire, Biochimie M\u00e9dicale et Pathologie, Facult\u00e9 de m\u00e9decine, Qu\u00e9bec, Canada"],"affiliations":[{"raw_affiliation_string":"Centre de Recherche du CHU de Qu\u00e9bec - Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada","institution_ids":["https://openalex.org/I4210139308"]},{"raw_affiliation_string":"Centre de Recherche sur le Cancer de l'Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada","institution_ids":["https://openalex.org/I43406934"]},{"raw_affiliation_string":"D\u00e9partement de Biologie Mol\u00e9culaire, Biochimie M\u00e9dicale et Pathologie, Facult\u00e9 de m\u00e9decine, Qu\u00e9bec, Canada","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071487081","display_name":"Arnaud Droit","orcid":"https://orcid.org/0000-0001-7922-790X"},"institutions":[{"id":"https://openalex.org/I4210139308","display_name":"Centre hospitalier de l'Universit\u00e9 Laval","ror":"https://ror.org/041v96n47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I4210139308"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Arnaud Droit","raw_affiliation_strings":["Centre de Recherche du CHU de Qu\u00e9bec - Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada","D\u00e9partement de M\u00e9decine Mol\u00e9culaire, Facult\u00e9 de m\u00e9decine, Qu\u00e9bec, Canada"],"affiliations":[{"raw_affiliation_string":"Centre de Recherche du CHU de Qu\u00e9bec - Universit\u00e9 Laval, Qu\u00e9bec, Qu\u00e9bec, Canada","institution_ids":["https://openalex.org/I4210139308"]},{"raw_affiliation_string":"D\u00e9partement de M\u00e9decine Mol\u00e9culaire, Facult\u00e9 de m\u00e9decine, Qu\u00e9bec, Canada","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5071487081"],"corresponding_institution_ids":["https://openalex.org/I4210139308"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.8716,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.76891338,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"12","issue":"8","first_page":"e1004751","last_page":"e1004751"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.610615611076355},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5806302428245544},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5324873328208923},{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.5208345055580139},{"id":"https://openalex.org/keywords/enhancer","display_name":"Enhancer","score":0.46357136964797974},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.257112056016922},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2127663493156433}],"concepts":[{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.610615611076355},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5806302428245544},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5324873328208923},{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.5208345055580139},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.46357136964797974},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.257112056016922},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2127663493156433}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001402","descriptor_name":"B-Lymphocytes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001402","descriptor_name":"B-Lymphocytes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001402","descriptor_name":"B-Lymphocytes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1004751","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004751","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004751&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:27538250","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27538250","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:1004751","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004751","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:858dc1055f5c4b449ee71839ffe336d3","is_oa":true,"landing_page_url":"https://doaj.org/article/858dc1055f5c4b449ee71839ffe336d3","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 12, Iss 8, p e1004751 (2016)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/3713745","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/_i_metagene_i_Profiles_Analyses_Reveal_Regulatory_Element_s_Factor-Specific_Recruitment_Patterns/3713745","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:4990179","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4990179","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1004751","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004751","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004751&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2041563678","display_name":null,"funder_award_id":"36266","funder_id":"https://openalex.org/F4320334618","funder_display_name":"Fonds de Recherche du Qu\u00e9bec - Sant\u00e9"},{"id":"https://openalex.org/G3030655770","display_name":null,"funder_award_id":"Research Chair","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G3332199645","display_name":null,"funder_award_id":"436266-2013","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G4389354971","display_name":null,"funder_award_id":"Research","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G5262915324","display_name":null,"funder_award_id":"Award","funder_id":"https://openalex.org/F4320334618","funder_display_name":"Fonds de Recherche du Qu\u00e9bec - Sant\u00e9"},{"id":"https://openalex.org/G5265193246","display_name":null,"funder_award_id":"Canada Research Chair","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G6282788884","display_name":null,"funder_award_id":"Canadian Institutes of Health","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"},{"id":"https://openalex.org/G7798217166","display_name":null,"funder_award_id":"IC513823","funder_id":"https://openalex.org/F4320338070","funder_display_name":"Institute of Nutrition, Metabolism and Diabetes"}],"funders":[{"id":"https://openalex.org/F4320310137","display_name":"Universit\u00e9 Laval","ror":"https://ror.org/04sjchr03"},{"id":"https://openalex.org/F4320314000","display_name":"Compute Canada","ror":"https://ror.org/03ty8yr27"},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"},{"id":"https://openalex.org/F4320334618","display_name":"Fonds de Recherche du Qu\u00e9bec - Sant\u00e9","ror":"https://ror.org/02eqrsj93"},{"id":"https://openalex.org/F4320338070","display_name":"Institute of Nutrition, Metabolism and Diabetes","ror":"https://ror.org/05nct1z71"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2515176360.pdf","grobid_xml":"https://content.openalex.org/works/W2515176360.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1564246054","https://openalex.org/W1965425724","https://openalex.org/W1978901723","https://openalex.org/W1991740019","https://openalex.org/W1993413544","https://openalex.org/W2001770641","https://openalex.org/W2013287009","https://openalex.org/W2014787267","https://openalex.org/W2015845481","https://openalex.org/W2019422906","https://openalex.org/W2040909468","https://openalex.org/W2052562387","https://openalex.org/W2061777334","https://openalex.org/W2067658227","https://openalex.org/W2070030982","https://openalex.org/W2076154138","https://openalex.org/W2083073732","https://openalex.org/W2084160423","https://openalex.org/W2091244202","https://openalex.org/W2108797218","https://openalex.org/W2109275727","https://openalex.org/W2111353388","https://openalex.org/W2123460634","https://openalex.org/W2129795133","https://openalex.org/W2131478115","https://openalex.org/W2131933701","https://openalex.org/W2144787399","https://openalex.org/W2145091349","https://openalex.org/W2149627698","https://openalex.org/W2150038257","https://openalex.org/W2152791321","https://openalex.org/W2158405078","https://openalex.org/W2170830174","https://openalex.org/W2171808845","https://openalex.org/W2174466696","https://openalex.org/W2259938310","https://openalex.org/W2519244818"],"related_works":["https://openalex.org/W2135678793","https://openalex.org/W2109288169","https://openalex.org/W4223449272","https://openalex.org/W2978247079","https://openalex.org/W4303699336","https://openalex.org/W2152841149","https://openalex.org/W2586783543","https://openalex.org/W2973036402","https://openalex.org/W2745970610","https://openalex.org/W2800002600"],"abstract_inverted_index":{"ChIP-Sequencing":[0],"(ChIP-Seq)":[1],"provides":[2],"a":[3,23,38,49,70,145,158],"vast":[4],"amount":[5],"of":[6,11,18,43,48,98,109,139],"information":[7],"regarding":[8],"the":[9,14,44,54,58,63,77,106,149,162,183],"localization":[10],"proteins":[12],"across":[13],"genome.":[15],"The":[16,127],"aggregation":[17],"ChIP-Seq":[19,78,99],"enrichment":[20,79],"signal":[21,80],"in":[22,93,119,124,180],"metagene":[24,103],"plot":[25],"is":[26],"an":[27],"approach":[28],"commonly":[29],"used":[30,102],"to":[31,36,72,104,121,170],"summarize":[32,74],"data":[33],"complexity":[34],"and":[35,62,75,88,117,132,156,176,187],"obtain":[37],"high":[39],"level":[40],"visual":[41],"representation":[42],"general":[45],"occupancy":[46,108,130,152,165],"pattern":[47],"protein.":[50],"Here":[51],"we":[52],"present":[53],"R":[55,181],"package":[56,65],"metagene,":[57,174],"graphical":[59],"interface":[60],"Imetagene":[61,175],"companion":[64],"similaRpeak.":[66],"Together,":[67],"they":[68],"provide":[69],"framework":[71],"integrate,":[73],"compare":[76],"from":[81],"complex":[82],"experimental":[83],"designs.":[84],"Those":[85],"packages":[86],"identify":[87],"quantify":[89],"similarities":[90],"or":[91],"dissimilarities":[92],"patterns":[94,131],"between":[95,129],"large":[96],"numbers":[97],"profiles.":[100],"We":[101],"investigate":[105],"differential":[107],"regulatory":[110,114,150,163],"factors":[111],"at":[112],"noncoding":[113],"regions":[115],"(promoters":[116],"enhancers)":[118],"relation":[120],"transcriptional":[122,133,142],"activity":[123,134],"GM12878":[125],"B-lymphocytes.":[126],"relationships":[128],"suggest":[135],"two":[136],"different":[137],"mechanisms":[138],"action":[140],"for":[141],"control:":[143],"i)":[144],"\"gradient":[146],"effect\"":[147,160],"where":[148,161],"factor":[151,164],"levels":[153,166],"follow":[154],"transcription":[155],"ii)":[157],"\"threshold":[159],"max":[167],"out":[168],"prior":[169],"reaching":[171],"maximal":[172],"transcription.":[173],"similaRpeak":[177],"are":[178,188],"implemented":[179],"under":[182],"Artistic":[184],"license":[185],"2.0":[186],"available":[189],"on":[190],"Bioconductor.":[191]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
