{"id":"https://openalex.org/W2068249197","doi":"https://doi.org/10.1371/journal.pcbi.1004067","title":"Exploring Bacterial Organelle Interactomes: A Model of the Protein-Protein Interaction Network in the Pdu Microcompartment","display_name":"Exploring Bacterial Organelle Interactomes: A Model of the Protein-Protein Interaction Network in the Pdu Microcompartment","publication_year":2015,"publication_date":"2015-02-03","ids":{"openalex":"https://openalex.org/W2068249197","doi":"https://doi.org/10.1371/journal.pcbi.1004067","mag":"2068249197","pmid":"https://pubmed.ncbi.nlm.nih.gov/25646976"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1004067","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004067","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004067&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004067&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012864188","display_name":"Julien Jorda","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Julien Jorda","raw_affiliation_strings":["UCLA-DOE Institute for Genomics and Proteomics, Los Angeles, California, United States of America"],"affiliations":[{"raw_affiliation_string":"UCLA-DOE Institute for Genomics and Proteomics, Los Angeles, California, United States of America","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100345976","display_name":"Yu Liu","orcid":"https://orcid.org/0009-0007-6599-5685"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yu Liu","raw_affiliation_strings":["Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, Iowa, United States of America"],"affiliations":[{"raw_affiliation_string":"Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, Iowa, United States of America","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055561144","display_name":"Thomas A. Bobik","orcid":"https://orcid.org/0000-0002-2598-9703"},"institutions":[{"id":"https://openalex.org/I173911158","display_name":"Iowa State University","ror":"https://ror.org/04rswrd78","country_code":"US","type":"education","lineage":["https://openalex.org/I173911158"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Thomas A. Bobik","raw_affiliation_strings":["Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, Iowa, United States of America"],"affiliations":[{"raw_affiliation_string":"Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, Iowa, United States of America","institution_ids":["https://openalex.org/I173911158"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061217668","display_name":"Todd O. Yeates","orcid":"https://orcid.org/0000-0001-5709-9839"},"institutions":[{"id":"https://openalex.org/I161318765","display_name":"University of California, Los Angeles","ror":"https://ror.org/046rm7j60","country_code":"US","type":"education","lineage":["https://openalex.org/I161318765"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Todd O. Yeates","raw_affiliation_strings":["UCLA-DOE Institute for Genomics and Proteomics, Los Angeles, California, United States of America; Molecular Biology Institute, University of California, Los Angeles, Los Angeles, California, United States of America; Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, California, United States of America","UCLA-DOE Institute for Genomics and Proteomics, Los Angeles, California, United States of America","Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, California, United States of America","Molecular Biology Institute, University of California, Los Angeles, Los Angeles, California, United States of America"],"affiliations":[{"raw_affiliation_string":"UCLA-DOE Institute for Genomics and Proteomics, Los Angeles, California, United States of America; Molecular Biology Institute, University of California, Los Angeles, Los Angeles, California, United States of America; Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, California, United States of America","institution_ids":[]},{"raw_affiliation_string":"UCLA-DOE Institute for Genomics and Proteomics, Los Angeles, California, United States of America","institution_ids":[]},{"raw_affiliation_string":"Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I161318765"]},{"raw_affiliation_string":"Molecular Biology Institute, University of California, Los Angeles, Los Angeles, California, United States of America","institution_ids":["https://openalex.org/I161318765"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5012864188","https://openalex.org/A5055561144","https://openalex.org/A5061217668","https://openalex.org/A5100345976"],"corresponding_institution_ids":["https://openalex.org/I161318765","https://openalex.org/I173911158"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.3582,"has_fulltext":true,"cited_by_count":31,"citation_normalized_percentile":{"value":0.80574401,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"11","issue":"2","first_page":"e1004067","last_page":"e1004067"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interactome","display_name":"Interactome","score":0.8932857513427734},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6498959064483643},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.6120187044143677},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5593795776367188},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.5406115055084229},{"id":"https://openalex.org/keywords/random-hexamer","display_name":"Random hexamer","score":0.5182766318321228},{"id":"https://openalex.org/keywords/homology-modeling","display_name":"Homology modeling","score":0.508525013923645},{"id":"https://openalex.org/keywords/hypothetical-protein","display_name":"Hypothetical protein","score":0.47457101941108704},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.31348320841789246},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2973567843437195},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.20136484503746033},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.19725263118743896},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08566969633102417}],"concepts":[{"id":"https://openalex.org/C9760119","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interactome","level":3,"score":0.8932857513427734},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6498959064483643},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.6120187044143677},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5593795776367188},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.5406115055084229},{"id":"https://openalex.org/C189754071","wikidata":"https://www.wikidata.org/wiki/Q7291972","display_name":"Random hexamer","level":2,"score":0.5182766318321228},{"id":"https://openalex.org/C169627665","wikidata":"https://www.wikidata.org/wiki/Q5767913","display_name":"Homology modeling","level":3,"score":0.508525013923645},{"id":"https://openalex.org/C129075420","wikidata":"https://www.wikidata.org/wiki/Q10855009","display_name":"Hypothetical protein","level":3,"score":0.47457101941108704},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.31348320841789246},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2973567843437195},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.20136484503746033},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.19725263118743896},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08566969633102417}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015388","descriptor_name":"Organelles","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015388","descriptor_name":"Organelles","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015388","descriptor_name":"Organelles","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015388","descriptor_name":"Organelles","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015388","descriptor_name":"Organelles","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D015388","descriptor_name":"Organelles","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pcbi.1004067","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004067","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004067&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:25646976","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25646976","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:230f1df7f8f14876988725d1936c04ca","is_oa":true,"landing_page_url":"https://doaj.org/article/230f1df7f8f14876988725d1936c04ca","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 11, Iss 2, p e1004067 (2015)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:3292268","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4315436","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/1300561","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/_Exploring_Bacterial_Organelle_Interactomes_A_Model_of_the_Protein_Protein_Interaction_Network_in_the_Pdu_Microcompartment_/1300561","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1004067","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1004067","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1004067&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.4000000059604645,"id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G7656828314","display_name":null,"funder_award_id":"AI081146","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2068249197.pdf","grobid_xml":"https://content.openalex.org/works/W2068249197.grobid-xml"},"referenced_works_count":110,"referenced_works":["https://openalex.org/W229097380","https://openalex.org/W1499404961","https://openalex.org/W1547986306","https://openalex.org/W1568415783","https://openalex.org/W1578104218","https://openalex.org/W1766666248","https://openalex.org/W1817268409","https://openalex.org/W1869653076","https://openalex.org/W1872375678","https://openalex.org/W1902395522","https://openalex.org/W1966378982","https://openalex.org/W1972043325","https://openalex.org/W1977799009","https://openalex.org/W1978871721","https://openalex.org/W1981722388","https://openalex.org/W1984052175","https://openalex.org/W1986197936","https://openalex.org/W1993460344","https://openalex.org/W1994144928","https://openalex.org/W1995117714","https://openalex.org/W1996626939","https://openalex.org/W1998370988","https://openalex.org/W1999565982","https://openalex.org/W1999741166","https://openalex.org/W2000036006","https://openalex.org/W2001792383","https://openalex.org/W2007500570","https://openalex.org/W2009596137","https://openalex.org/W2013699079","https://openalex.org/W2015530049","https://openalex.org/W2015548609","https://openalex.org/W2016999505","https://openalex.org/W2017189381","https://openalex.org/W2018608699","https://openalex.org/W2024976335","https://openalex.org/W2026496778","https://openalex.org/W2027282275","https://openalex.org/W2031159897","https://openalex.org/W2032760653","https://openalex.org/W2035036334","https://openalex.org/W2035763480","https://openalex.org/W2037312364","https://openalex.org/W2037858585","https://openalex.org/W2041681786","https://openalex.org/W2041750937","https://openalex.org/W2042947619","https://openalex.org/W2043654227","https://openalex.org/W2046855017","https://openalex.org/W2047544230","https://openalex.org/W2050933887","https://openalex.org/W2053501576","https://openalex.org/W2057885377","https://openalex.org/W2060316504","https://openalex.org/W2065921821","https://openalex.org/W2070695257","https://openalex.org/W2079173537","https://openalex.org/W2081068679","https://openalex.org/W2087659401","https://openalex.org/W2090408264","https://openalex.org/W2095698127","https://openalex.org/W2096425628","https://openalex.org/W2098300876","https://openalex.org/W2100530251","https://openalex.org/W2101803429","https://openalex.org/W2103560494","https://openalex.org/W2106391842","https://openalex.org/W2107424557","https://openalex.org/W2109715166","https://openalex.org/W2111211467","https://openalex.org/W2111387452","https://openalex.org/W2113613985","https://openalex.org/W2116552704","https://openalex.org/W2121376862","https://openalex.org/W2124310341","https://openalex.org/W2126957790","https://openalex.org/W2126991359","https://openalex.org/W2127272780","https://openalex.org/W2128000228","https://openalex.org/W2131971159","https://openalex.org/W2132245233","https://openalex.org/W2132926880","https://openalex.org/W2133990480","https://openalex.org/W2134967712","https://openalex.org/W2136700678","https://openalex.org/W2137953382","https://openalex.org/W2138289353","https://openalex.org/W2139362659","https://openalex.org/W2140807054","https://openalex.org/W2140894850","https://openalex.org/W2141505745","https://openalex.org/W2146312020","https://openalex.org/W2150499718","https://openalex.org/W2152568394","https://openalex.org/W2153970519","https://openalex.org/W2158021267","https://openalex.org/W2160363091","https://openalex.org/W2160991221","https://openalex.org/W2161151688","https://openalex.org/W2161776975","https://openalex.org/W2163627198","https://openalex.org/W2166810854","https://openalex.org/W2167482691","https://openalex.org/W2167606015","https://openalex.org/W2168812240","https://openalex.org/W2172158128","https://openalex.org/W2328590636","https://openalex.org/W2911964244","https://openalex.org/W3083668045","https://openalex.org/W4214661561","https://openalex.org/W4252706339"],"related_works":["https://openalex.org/W2152546257","https://openalex.org/W1500663296","https://openalex.org/W2018720220","https://openalex.org/W4252442860","https://openalex.org/W3159731292","https://openalex.org/W2178844921","https://openalex.org/W2162117109","https://openalex.org/W2392586760","https://openalex.org/W4319230148","https://openalex.org/W2007737173"],"abstract_inverted_index":{"Bacterial":[0],"microcompartments":[1],"(MCPs)":[2],"are":[3,124,166,226],"protein-bound":[4],"organelles":[5],"that":[6,133,186,228],"carry":[7],"out":[8],"diverse":[9],"metabolic":[10],"pathways":[11],"in":[12,170],"a":[13,23,30,72,114,142,188,222,233,247],"wide":[14],"range":[15],"of":[16,22,29,75,94,108,116,149,179,190,213,232,246,256],"bacteria.":[17],"These":[18],"supramolecular":[19],"assemblies":[20],"consist":[21],"thin":[24],"outer":[25],"protein":[26,95,135,189],"shell,":[27],"reminiscent":[28],"viral":[31],"capsid,":[32],"which":[33,121],"encapsulates":[34],"sequentially":[35],"acting":[36],"enzymes.":[37],"The":[38,162],"most":[39],"complex":[40],"MCP":[41],"elucidated":[42],"so":[43],"far":[44],"is":[45,137,201],"the":[46,53,63,78,100,106,109,117,171,175,180,197,206,210,214,230,244,254,257],"propanediol":[47],"utilizing":[48],"(Pdu)":[49],"microcompartment.":[50],"It":[51],"contains":[52],"reactions":[54],"for":[55,145],"degrading":[56],"1,2-propanediol.":[57],"While":[58],"several":[59],"experimental":[60],"studies":[61],"on":[62,174],"Pdu":[64,110,118,258],"system":[65],"have":[66],"provided":[67],"hints":[68],"about":[69],"its":[70],"organization,":[71],"clear":[73],"picture":[74],"how":[76],"all":[77],"individual":[79],"components":[80],"interact":[81],"has":[82],"not":[83],"emerged":[84],"yet.":[85],"Here":[86],"we":[87],"use":[88],"co-evolution-based":[89],"methods,":[90],"involving":[91,221],"pairwise":[92],"comparisons":[93],"phylogenetic":[96],"trees,":[97],"to":[98,139,168,196,203],"predict":[99],"protein-protein":[101],"interaction":[102],"(PPI)":[103],"network":[104],"governing":[105],"assembly":[107],"MCP.":[111,259],"We":[112,131,183],"propose":[113,185],"model":[115],"interactome,":[119],"from":[120],"selected":[122],"PPIs":[123],"further":[125],"inspected":[126],"via":[127],"computational":[128,239],"docking":[129],"simulations.":[130],"find":[132],"shell":[134,217],"PduA":[136,181],"able":[138],"serve":[140],"as":[141],"\"universal":[143],"hub\"":[144],"targeting":[146],"an":[147],"array":[148],"enzymes":[150],"presenting":[151],"special":[152],"N-terminal":[153,164],"extensions,":[154],"namely":[155],"PduC,":[156],"D,":[157],"E,":[158],"L":[159],"and":[160],"P.":[161],"varied":[163],"peptides":[165],"predicted":[167],"bind":[169],"same":[172],"cleft":[173],"presumptive":[176],"luminal":[177],"face":[178],"hexamer.":[182],"also":[184],"PduV,":[187],"unknown":[191],"function":[192],"with":[193,209],"remote":[194],"homology":[195],"Ras-like":[198],"GTPase":[199],"superfamily,":[200],"likely":[202],"localize":[204],"outside":[205],"MCP,":[207],"interacting":[208],"protruding":[211],"\u03b2-barrel":[212],"hexameric":[215],"PduU":[216],"protein.":[218],"Preliminary":[219],"experiments":[220],"bacterial":[223,248],"two-hybrid":[224],"assay":[225],"presented":[227],"corroborate":[229],"existence":[231],"PduU-PduV":[234],"interaction.":[235],"This":[236],"first":[237],"systematic":[238],"study":[240],"aimed":[241],"at":[242],"characterizing":[243],"interactome":[245],"microcompartment":[249],"provides":[250],"fresh":[251],"insight":[252],"into":[253],"organization":[255]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
