{"id":"https://openalex.org/W2077651691","doi":"https://doi.org/10.1371/journal.pcbi.1003038","title":"Localization of Protein Aggregation in Escherichia coli Is Governed by Diffusion and Nucleoid Macromolecular Crowding Effect","display_name":"Localization of Protein Aggregation in Escherichia coli Is Governed by Diffusion and Nucleoid Macromolecular Crowding Effect","publication_year":2013,"publication_date":"2013-04-25","ids":{"openalex":"https://openalex.org/W2077651691","doi":"https://doi.org/10.1371/journal.pcbi.1003038","mag":"2077651691","pmid":"https://pubmed.ncbi.nlm.nih.gov/23633942"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1003038","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003038","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003038&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003038&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020242440","display_name":"Anne\u2010Sophie Coquel","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Anne-Sophie Coquel","raw_affiliation_strings":["Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale, Unit\u00e9 1001, Paris, France","EPI Beagle, INRIA Rhone-Alpes, Villeurbanne, France","University of Lyon, LIRIS UMR5205 CNRS, Villeurbanne, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale, Unit\u00e9 1001, Paris, France","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"EPI Beagle, INRIA Rhone-Alpes, Villeurbanne, France","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"University of Lyon, LIRIS UMR5205 CNRS, Villeurbanne, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081561979","display_name":"Jean-Pascal Jacob","orcid":null},"institutions":[{"id":"https://openalex.org/I110736937","display_name":"D\u00e9l\u00e9gation Paris 5","ror":"https://ror.org/02e0y6e06","country_code":"FR","type":"government","lineage":["https://openalex.org/I110736937","https://openalex.org/I154526488"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4387154995","display_name":"Math\u00e9matiques Appliqu\u00e9es \u00e0 Paris 5","ror":"https://ror.org/04yrrdj53","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4387154995"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jean-Pascal Jacob","raw_affiliation_strings":["University Paris Descartes, MAP5 - CNRS UMR 8145, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University Paris Descartes, MAP5 - CNRS UMR 8145, Paris, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I1294671590","https://openalex.org/I110736937","https://openalex.org/I4387154995"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078515924","display_name":"Ma\u00ebl Primet","orcid":null},"institutions":[{"id":"https://openalex.org/I110736937","display_name":"D\u00e9l\u00e9gation Paris 5","ror":"https://ror.org/02e0y6e06","country_code":"FR","type":"government","lineage":["https://openalex.org/I110736937","https://openalex.org/I154526488"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4387154995","display_name":"Math\u00e9matiques Appliqu\u00e9es \u00e0 Paris 5","ror":"https://ror.org/04yrrdj53","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4387154995"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Mael Primet","raw_affiliation_strings":["University Paris Descartes, MAP5 - CNRS UMR 8145, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University Paris Descartes, MAP5 - CNRS UMR 8145, Paris, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I1294671590","https://openalex.org/I110736937","https://openalex.org/I4387154995"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023187777","display_name":"Alice D\u00e9marez","orcid":null},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Alice Demarez","raw_affiliation_strings":["Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale, Unit\u00e9 1001, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale, Unit\u00e9 1001, Paris, France","institution_ids":["https://openalex.org/I154526488"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049794092","display_name":"Mariella Dimiccoli","orcid":"https://orcid.org/0000-0002-2669-400X"},"institutions":[{"id":"https://openalex.org/I110736937","display_name":"D\u00e9l\u00e9gation Paris 5","ror":"https://ror.org/02e0y6e06","country_code":"FR","type":"government","lineage":["https://openalex.org/I110736937","https://openalex.org/I154526488"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4387154995","display_name":"Math\u00e9matiques Appliqu\u00e9es \u00e0 Paris 5","ror":"https://ror.org/04yrrdj53","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4387154995"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Mariella Dimiccoli","raw_affiliation_strings":["University Paris Descartes, MAP5 - CNRS UMR 8145, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University Paris Descartes, MAP5 - CNRS UMR 8145, Paris, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I1294671590","https://openalex.org/I110736937","https://openalex.org/I4387154995"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031953558","display_name":"Thomas Julou","orcid":"https://orcid.org/0000-0001-7123-198X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I29607241","display_name":"\u00c9cole Normale Sup\u00e9rieure - PSL","ror":"https://ror.org/05a0dhs15","country_code":"FR","type":"other","lineage":["https://openalex.org/I2746051580","https://openalex.org/I29607241"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Thomas Julou","raw_affiliation_strings":["Laboratoire de Physique Statistique de l'\u00c9cole Normale Sup\u00e9rieure, UMR 8550 CNRS, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Physique Statistique de l'\u00c9cole Normale Sup\u00e9rieure, UMR 8550 CNRS, Paris, France","institution_ids":["https://openalex.org/I29607241","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090845509","display_name":"Lionel Moisan","orcid":"https://orcid.org/0000-0001-6019-2698"},"institutions":[{"id":"https://openalex.org/I110736937","display_name":"D\u00e9l\u00e9gation Paris 5","ror":"https://ror.org/02e0y6e06","country_code":"FR","type":"government","lineage":["https://openalex.org/I110736937","https://openalex.org/I154526488"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4387154995","display_name":"Math\u00e9matiques Appliqu\u00e9es \u00e0 Paris 5","ror":"https://ror.org/04yrrdj53","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4387154995"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Lionel Moisan","raw_affiliation_strings":["University Paris Descartes, MAP5 - CNRS UMR 8145, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University Paris Descartes, MAP5 - CNRS UMR 8145, Paris, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I1294671590","https://openalex.org/I110736937","https://openalex.org/I4387154995"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047096952","display_name":"Ariel B. Lindner","orcid":"https://orcid.org/0000-0001-5015-6511"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Ariel B. Lindner","raw_affiliation_strings":["EPI Beagle, INRIA Rhone-Alpes, Villeurbanne, France","Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale, Unit\u00e9 1001, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"EPI Beagle, INRIA Rhone-Alpes, Villeurbanne, France","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale, Unit\u00e9 1001, Paris, France","institution_ids":["https://openalex.org/I154526488"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021999741","display_name":"Hugues Berry","orcid":"https://orcid.org/0000-0003-3470-683X"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I110736937","display_name":"D\u00e9l\u00e9gation Paris 5","ror":"https://ror.org/02e0y6e06","country_code":"FR","type":"government","lineage":["https://openalex.org/I110736937","https://openalex.org/I154526488"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4387154995","display_name":"Math\u00e9matiques Appliqu\u00e9es \u00e0 Paris 5","ror":"https://ror.org/04yrrdj53","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4387154995"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Hugues Berry","raw_affiliation_strings":["University Paris Descartes, MAP5 - CNRS UMR 8145, Paris, France","University of Lyon, LIRIS UMR5205 CNRS, Villeurbanne, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University Paris Descartes, MAP5 - CNRS UMR 8145, Paris, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I1294671590","https://openalex.org/I110736937","https://openalex.org/I4387154995"]},{"raw_affiliation_string":"University of Lyon, LIRIS UMR5205 CNRS, Villeurbanne, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5021999741","https://openalex.org/A5047096952"],"corresponding_institution_ids":["https://openalex.org/I100532134","https://openalex.org/I110736937","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4387154995"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":9.8549,"has_fulltext":true,"cited_by_count":145,"citation_normalized_percentile":{"value":0.98454333,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"9","issue":"4","first_page":"e1003038","last_page":"e1003038"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10943","display_name":"Escherichia coli research studies","score":0.9878000020980835,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nucleoid","display_name":"Nucleoid","score":0.9111104011535645},{"id":"https://openalex.org/keywords/macromolecular-crowding","display_name":"Macromolecular crowding","score":0.78471839427948},{"id":"https://openalex.org/keywords/escherichia-coli","display_name":"Escherichia coli","score":0.6583919525146484},{"id":"https://openalex.org/keywords/protein-aggregation","display_name":"Protein aggregation","score":0.6410899758338928},{"id":"https://openalex.org/keywords/ftsz","display_name":"FtsZ","score":0.601005494594574},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.5740799903869629},{"id":"https://openalex.org/keywords/diffusion","display_name":"Diffusion","score":0.5643116235733032},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4493529796600342},{"id":"https://openalex.org/keywords/apparent-size","display_name":"Apparent Size","score":0.44655105471611023},{"id":"https://openalex.org/keywords/fluorescence-recovery-after-photobleaching","display_name":"Fluorescence recovery after photobleaching","score":0.4411759078502655},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.40770065784454346},{"id":"https://openalex.org/keywords/macromolecule","display_name":"Macromolecule","score":0.38039925694465637},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.32193198800086975},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.1957707405090332},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.17223000526428223}],"concepts":[{"id":"https://openalex.org/C53642103","wikidata":"https://www.wikidata.org/wiki/Q459485","display_name":"Nucleoid","level":4,"score":0.9111104011535645},{"id":"https://openalex.org/C181990884","wikidata":"https://www.wikidata.org/wiki/Q11396092","display_name":"Macromolecular crowding","level":3,"score":0.78471839427948},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.6583919525146484},{"id":"https://openalex.org/C136238340","wikidata":"https://www.wikidata.org/wiki/Q7251455","display_name":"Protein aggregation","level":2,"score":0.6410899758338928},{"id":"https://openalex.org/C2776237524","wikidata":"https://www.wikidata.org/wiki/Q24773445","display_name":"FtsZ","level":4,"score":0.601005494594574},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.5740799903869629},{"id":"https://openalex.org/C69357855","wikidata":"https://www.wikidata.org/wiki/Q163214","display_name":"Diffusion","level":2,"score":0.5643116235733032},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4493529796600342},{"id":"https://openalex.org/C2911159403","wikidata":"https://www.wikidata.org/wiki/Q718647","display_name":"Apparent Size","level":2,"score":0.44655105471611023},{"id":"https://openalex.org/C26659971","wikidata":"https://www.wikidata.org/wiki/Q729923","display_name":"Fluorescence recovery after photobleaching","level":3,"score":0.4411759078502655},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.40770065784454346},{"id":"https://openalex.org/C204389451","wikidata":"https://www.wikidata.org/wiki/Q178593","display_name":"Macromolecule","level":2,"score":0.38039925694465637},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.32193198800086975},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.1957707405090332},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.17223000526428223},{"id":"https://openalex.org/C119767625","wikidata":"https://www.wikidata.org/wiki/Q618211","display_name":"Optometry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C41625074","wikidata":"https://www.wikidata.org/wiki/Q176088","display_name":"Membrane","level":2,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002467","descriptor_name":"Cell Nucleus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002467","descriptor_name":"Cell Nucleus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002467","descriptor_name":"Cell Nucleus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004058","descriptor_name":"Diffusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004058","descriptor_name":"Diffusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004058","descriptor_name":"Diffusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008856","descriptor_name":"Microscopy, Fluorescence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008856","descriptor_name":"Microscopy, Fluorescence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008856","descriptor_name":"Microscopy, Fluorescence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015388","descriptor_name":"Organelles","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015388","descriptor_name":"Organelles","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015388","descriptor_name":"Organelles","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021381","descriptor_name":"Protein Transport","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021381","descriptor_name":"Protein Transport","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021381","descriptor_name":"Protein Transport","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029968","descriptor_name":"Escherichia coli Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":10,"locations":[{"id":"doi:10.1371/journal.pcbi.1003038","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003038","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003038&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:23633942","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23633942","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:arXiv.org:1303.1904","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1303.1904","pdf_url":"https://arxiv.org/pdf/1303.1904","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.722.3426","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.722.3426","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.inrialpes.fr/Berry/Images/Coqueleal_PlosCB.pdf","raw_type":"text"},{"id":"pmh:oai:RePEc:plo:pcbi00:1003038","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003038","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:9a44de52057b4aa5be582ff2684e7f3d","is_oa":true,"landing_page_url":"https://doaj.org/article/9a44de52057b4aa5be582ff2684e7f3d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 9, Iss 4, p e1003038 (2013)","raw_type":"article"},{"id":"pmh:oai:edoc.unibas.ch:79788","is_oa":false,"landing_page_url":"https://edoc.unibas.ch/79788/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401836","display_name":"edoc (University of Basel)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1850255","host_organization_name":"University of Basel","host_organization_lineage":["https://openalex.org/I1850255"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:europepmc.org:2636782","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3636022","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/691679","is_oa":true,"landing_page_url":"https://figshare.com/articles/Localization_of_Protein_Aggregation_in_Escherichia_coli_Is_Governed_by_Diffusion_and_Nucleoid_Macromolecular_Crowding_Effect/691679","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:3636022","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3636022","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1003038","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1003038","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1003038&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G196419191","display_name":null,"funder_award_id":"CNRS-IN2P3","funder_id":"https://openalex.org/F4320322892","funder_display_name":"Centre National de la Recherche Scientifique"}],"funders":[{"id":"https://openalex.org/F4320313934","display_name":"Institut national de recherche en informatique et en automatique (INRIA)","ror":"https://ror.org/02kvxyf05"},{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"},{"id":"https://openalex.org/F4320335860","display_name":"Institut National de Physique Nucl\u00e9aire et de Physique des Particules","ror":"https://ror.org/03fd77x13"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2077651691.pdf","grobid_xml":"https://content.openalex.org/works/W2077651691.grobid-xml"},"referenced_works_count":68,"referenced_works":["https://openalex.org/W166263191","https://openalex.org/W1528781336","https://openalex.org/W1658060341","https://openalex.org/W1964422431","https://openalex.org/W1964464000","https://openalex.org/W1967025628","https://openalex.org/W1975009150","https://openalex.org/W1980661496","https://openalex.org/W1984517428","https://openalex.org/W1984571004","https://openalex.org/W1985072454","https://openalex.org/W1986490461","https://openalex.org/W1988674422","https://openalex.org/W1990823004","https://openalex.org/W1996391065","https://openalex.org/W1996666978","https://openalex.org/W1998904894","https://openalex.org/W2003409413","https://openalex.org/W2009265594","https://openalex.org/W2015003979","https://openalex.org/W2020677693","https://openalex.org/W2026799761","https://openalex.org/W2034876354","https://openalex.org/W2039210066","https://openalex.org/W2039305326","https://openalex.org/W2054059225","https://openalex.org/W2054625522","https://openalex.org/W2054791517","https://openalex.org/W2055926450","https://openalex.org/W2057349693","https://openalex.org/W2058946062","https://openalex.org/W2072025308","https://openalex.org/W2075234068","https://openalex.org/W2081531625","https://openalex.org/W2082741569","https://openalex.org/W2083278118","https://openalex.org/W2088401205","https://openalex.org/W2090363184","https://openalex.org/W2092587339","https://openalex.org/W2095431213","https://openalex.org/W2097340351","https://openalex.org/W2099412396","https://openalex.org/W2101027541","https://openalex.org/W2103504827","https://openalex.org/W2103559027","https://openalex.org/W2112036188","https://openalex.org/W2114085934","https://openalex.org/W2116576178","https://openalex.org/W2124466665","https://openalex.org/W2124813297","https://openalex.org/W2124881652","https://openalex.org/W2124980889","https://openalex.org/W2126295762","https://openalex.org/W2133291738","https://openalex.org/W2133463539","https://openalex.org/W2134153749","https://openalex.org/W2136213285","https://openalex.org/W2136396015","https://openalex.org/W2146496997","https://openalex.org/W2148983475","https://openalex.org/W2150269770","https://openalex.org/W2151007518","https://openalex.org/W2156684470","https://openalex.org/W2158399801","https://openalex.org/W2159340219","https://openalex.org/W2161199533","https://openalex.org/W2171539493","https://openalex.org/W6645045626"],"related_works":["https://openalex.org/W2034954676","https://openalex.org/W3082882328","https://openalex.org/W2107565323","https://openalex.org/W2148671780","https://openalex.org/W2073229143","https://openalex.org/W2031200252","https://openalex.org/W2070886055","https://openalex.org/W2031322150","https://openalex.org/W103209986","https://openalex.org/W2077651691"],"abstract_inverted_index":{"Aggregates":[0],"of":[1,7,18,32,37,40,66,110,124,140,198,252,259,266,279],"misfolded":[2],"proteins":[3],"are":[4,83,178,225],"a":[5,44,181],"hallmark":[6],"many":[8],"age-related":[9],"diseases.":[10],"Recently,":[11],"they":[12],"have":[13],"been":[14],"linked":[15],"to":[16,59,75,85,180,186,211,229],"aging":[17,34,48],"Escherichia":[19],"coli":[20,42,116,130,261],"(E.":[21],"coli)":[22],"where":[23],"protein":[24,50,81,112,125,254,289],"aggregates":[25,82,113,126,149,255],"accumulate":[26],"at":[27],"the":[28,33,38,57,77,108,134,141,148,153,166,170,174,187,191,196,203,223,231,239,247,250,257,264,277],"old":[29],"pole":[30],"region":[31,182],"bacterium.":[35],"Because":[36],"potential":[39],"E.":[41,115,129,260,292],"as":[43],"model":[45],"organism,":[46],"elucidating":[47],"and":[49,101,137,219,227],"aggregation":[51,218],"in":[52,62,114,127,163,190,202,222,238,256,287,291],"this":[53,72],"bacterium":[54],"may":[55],"pave":[56],"way":[58],"significant":[60],"advances":[61],"our":[63,243],"global":[64],"understanding":[65],"aging.":[67],"A":[68],"first":[69],"obstacle":[70],"along":[71,173],"path":[73],"is":[74,117],"decipher":[76],"mechanisms":[78],"by":[79],"which":[80],"targeted":[84],"specific":[86],"intercellular":[87],"locations.":[88],"Here,":[89],"using":[90],"an":[91],"integrated":[92],"approach":[93],"based":[94],"on":[95,160,235,284],"individual-based":[96,209],"modeling,":[97],"time-lapse":[98],"fluorescence":[99],"microscopy":[100],"automated":[102],"image":[103],"analysis,":[104],"we":[105,132],"show":[106,212],"that":[107,147,158,183,213,249],"movement":[109],"aging-related":[111,253],"purely":[118],"diffusive":[119],"(Brownian).":[120],"Using":[121],"single-particle":[122],"tracking":[123],"live":[128],"cells,":[131],"estimated":[133],"average":[135],"size":[136,162],"diffusion":[138,156,220],"constant":[139],"aggregates.":[142],"Our":[143],"results":[144,244,262],"provide":[145],"evidence":[146],"passively":[150],"diffuse":[151],"within":[152],"cell,":[154],"with":[155,165,269],"constants":[157],"depend":[159],"their":[161],"agreement":[164],"Stokes-Einstein":[167],"law.":[168],"However,":[169],"aggregate":[171,236],"displacements":[172],"cell":[175,192],"long":[176],"axis":[177],"confined":[179],"roughly":[184],"corresponds":[185],"nucleoid-free":[188],"space":[189],"pole,":[193],"thus":[194,206],"confirming":[195],"importance":[197,278],"increased":[199],"macromolecular":[200,272,285],"crowding":[201],"nucleoids.":[204],"We":[205],"used":[207],"3D":[208],"modeling":[210],"these":[214],"three":[215],"ingredients":[216],"(diffusion,":[217],"hindrance":[221],"nucleoids)":[224],"sufficient":[226],"necessary":[228],"reproduce":[230],"available":[232],"experimental":[233],"data":[234],"localization":[237,251,290],"cells.":[240],"Taken":[241],"together,":[242],"strongly":[245],"support":[246,276],"hypothesis":[248],"poles":[258],"from":[263],"coupling":[265],"passive":[267],"diffusion-aggregation":[268],"spatially":[270],"non-homogeneous":[271],"crowding.":[273],"They":[274],"further":[275],"\"soft\"":[280],"intracellular":[281],"structuring":[282],"(based":[283],"crowding)":[286],"diffusion-based":[288],"coli.":[293]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":16},{"year":2019,"cited_by_count":14},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":14},{"year":2014,"cited_by_count":17},{"year":2013,"cited_by_count":4}],"updated_date":"2026-05-09T13:55:54.758798","created_date":"2025-10-10T00:00:00"}
