{"id":"https://openalex.org/W2171913567","doi":"https://doi.org/10.1371/journal.pcbi.1001045","title":"A Comprehensive Model of the Spatio-Temporal Stem Cell and Tissue Organisation in the Intestinal Crypt","display_name":"A Comprehensive Model of the Spatio-Temporal Stem Cell and Tissue Organisation in the Intestinal Crypt","publication_year":2011,"publication_date":"2011-01-06","ids":{"openalex":"https://openalex.org/W2171913567","doi":"https://doi.org/10.1371/journal.pcbi.1001045","mag":"2171913567","pmid":"https://pubmed.ncbi.nlm.nih.gov/21253562"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1001045","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1001045","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1001045&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1001045&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075054124","display_name":"Peter Buske","orcid":null},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Peter Buske","raw_affiliation_strings":["Interdisciplinary Centre for Bioinformatics, University Leipzig, Leipzig, Germany. buske@izbi.uni-leipzig.de","Interdisciplinary Centre for Bioinformatics, University Leipzig, Leipzig, Germany"],"affiliations":[{"raw_affiliation_string":"Interdisciplinary Centre for Bioinformatics, University Leipzig, Leipzig, Germany. buske@izbi.uni-leipzig.de","institution_ids":["https://openalex.org/I926574661"]},{"raw_affiliation_string":"Interdisciplinary Centre for Bioinformatics, University Leipzig, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111775211","display_name":"J\u00f6rg Galle","orcid":null},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"J\u00f6rg Galle","raw_affiliation_strings":["Interdisciplinary Centre for Bioinformatics, University Leipzig, Leipzig, Germany"],"affiliations":[{"raw_affiliation_string":"Interdisciplinary Centre for Bioinformatics, University Leipzig, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073963216","display_name":"Nick Barker","orcid":"https://orcid.org/0000-0003-3566-4475"},"institutions":[{"id":"https://openalex.org/I3018483916","display_name":"University Medical Center Utrecht","ror":"https://ror.org/0575yy874","country_code":"NL","type":"funder","lineage":["https://openalex.org/I3018483916"]},{"id":"https://openalex.org/I4210115206","display_name":"Hubrecht Institute for Developmental Biology and Stem Cell Research","ror":"https://ror.org/023qc4a07","country_code":"NL","type":"facility","lineage":["https://openalex.org/I1322597698","https://openalex.org/I4210115206"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Nick Barker","raw_affiliation_strings":["Hubrecht Institute, University Medical Center, Utrecht, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Hubrecht Institute, University Medical Center, Utrecht, The Netherlands","institution_ids":["https://openalex.org/I4210115206","https://openalex.org/I3018483916"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090162618","display_name":"Gabriela Aust","orcid":"https://orcid.org/0000-0002-4670-4543"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gabriela Aust","raw_affiliation_strings":["Center of Surgery, Research Laboratories, University Leipzig, Leipzig, Germany"],"affiliations":[{"raw_affiliation_string":"Center of Surgery, Research Laboratories, University Leipzig, Leipzig, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062248785","display_name":"Hans Clevers","orcid":"https://orcid.org/0000-0002-3077-5582"},"institutions":[{"id":"https://openalex.org/I3018483916","display_name":"University Medical Center Utrecht","ror":"https://ror.org/0575yy874","country_code":"NL","type":"funder","lineage":["https://openalex.org/I3018483916"]},{"id":"https://openalex.org/I4210115206","display_name":"Hubrecht Institute for Developmental Biology and Stem Cell Research","ror":"https://ror.org/023qc4a07","country_code":"NL","type":"facility","lineage":["https://openalex.org/I1322597698","https://openalex.org/I4210115206"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Hans Clevers","raw_affiliation_strings":["Hubrecht Institute, University Medical Center, Utrecht, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Hubrecht Institute, University Medical Center, Utrecht, The Netherlands","institution_ids":["https://openalex.org/I4210115206","https://openalex.org/I3018483916"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025964385","display_name":"Markus Loeffler","orcid":"https://orcid.org/0000-0002-0424-9933"},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Markus Loeffler","raw_affiliation_strings":["Institute for Medical Informatics, Statistics and Epidemiology, University Leipzig, Leipzig, Germany","Interdisciplinary Centre for Bioinformatics, University Leipzig, Leipzig, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Medical Informatics, Statistics and Epidemiology, University Leipzig, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]},{"raw_affiliation_string":"Interdisciplinary Centre for Bioinformatics, University Leipzig, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5075054124"],"corresponding_institution_ids":["https://openalex.org/I926574661"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":8.3222,"has_fulltext":true,"cited_by_count":177,"citation_normalized_percentile":{"value":0.98669431,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"7","issue":"1","first_page":"e1001045","last_page":"e1001045"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10336","display_name":"Cancer Cells and Metastasis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10336","display_name":"Cancer Cells and Metastasis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12065","display_name":"Hippo pathway signaling and YAP/TAZ","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/stem-cell","display_name":"Stem cell","score":0.7786404490470886},{"id":"https://openalex.org/keywords/crypt","display_name":"Crypt","score":0.7095829248428345},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6494746208190918},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.6405366063117981},{"id":"https://openalex.org/keywords/wnt-signaling-pathway","display_name":"Wnt signaling pathway","score":0.6225545406341553},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.5947661995887756},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.4695720374584198},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4526325762271881},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.44212576746940613},{"id":"https://openalex.org/keywords/cellular-differentiation","display_name":"Cellular differentiation","score":0.41246405243873596},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.3384174108505249},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19943419098854065},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19724035263061523},{"id":"https://openalex.org/keywords/signal-transduction","display_name":"Signal transduction","score":0.16703921556472778}],"concepts":[{"id":"https://openalex.org/C28328180","wikidata":"https://www.wikidata.org/wiki/Q48196","display_name":"Stem cell","level":2,"score":0.7786404490470886},{"id":"https://openalex.org/C66090201","wikidata":"https://www.wikidata.org/wiki/Q15995009","display_name":"Crypt","level":2,"score":0.7095829248428345},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6494746208190918},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.6405366063117981},{"id":"https://openalex.org/C137620995","wikidata":"https://www.wikidata.org/wiki/Q155769","display_name":"Wnt signaling pathway","level":3,"score":0.6225545406341553},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.5947661995887756},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.4695720374584198},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4526325762271881},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.44212576746940613},{"id":"https://openalex.org/C148738053","wikidata":"https://www.wikidata.org/wiki/Q210861","display_name":"Cellular differentiation","level":3,"score":0.41246405243873596},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.3384174108505249},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19943419098854065},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19724035263061523},{"id":"https://openalex.org/C62478195","wikidata":"https://www.wikidata.org/wiki/Q828130","display_name":"Signal transduction","level":2,"score":0.16703921556472778},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C134018914","wikidata":"https://www.wikidata.org/wiki/Q162606","display_name":"Endocrinology","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007413","descriptor_name":"Intestinal Mucosa","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007422","descriptor_name":"Intestines","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D007422","descriptor_name":"Intestines","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D007422","descriptor_name":"Intestines","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013234","descriptor_name":"Stem Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D013234","descriptor_name":"Stem Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D013234","descriptor_name":"Stem Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017209","descriptor_name":"Apoptosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017209","descriptor_name":"Apoptosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017209","descriptor_name":"Apoptosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049109","descriptor_name":"Cell Proliferation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049109","descriptor_name":"Cell Proliferation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049109","descriptor_name":"Cell Proliferation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051153","descriptor_name":"Wnt Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051153","descriptor_name":"Wnt Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051153","descriptor_name":"Wnt Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051880","descriptor_name":"Receptors, Notch","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051880","descriptor_name":"Receptors, Notch","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051880","descriptor_name":"Receptors, Notch","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":11,"locations":[{"id":"doi:10.1371/journal.pcbi.1001045","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1001045","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1001045&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:21253562","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21253562","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:pure.knaw.nl:publications/7d8c9c48-4001-448e-a343-139053c1b797","is_oa":true,"landing_page_url":"https://pure.knaw.nl/portal/en/publications/7d8c9c48-4001-448e-a343-139053c1b797","pdf_url":"https://pure.knaw.nl/portal/en/publications/7d8c9c48-4001-448e-a343-139053c1b797","source":{"id":"https://openalex.org/S4306401286","display_name":"KNAW research portal (Royal Academy of Art and Sciences (KNAW))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Buske, P, Galle, J, Barker, N, Aust, G, Clevers, H & Loeffler, M 2011, 'A comprehensive model of the spatio-temporal stem cell and tissue organisation in the intestinal crypt', PLoS Computational Biology, vol. 7, no. 1, pp. 1001045. https://doi.org/10.1371/journal.pcbi.1001045","raw_type":"article"},{"id":"pmh:oai:scholarbank.nus.edu.sg:10635/161656","is_oa":true,"landing_page_url":"https://scholarbank.nus.edu.sg/handle/10635/161656","pdf_url":null,"source":{"id":"https://openalex.org/S7407052290","display_name":"National University of Singapore","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Unpaywall 20191101","raw_type":"Article"},{"id":"pmh:oai:RePEc:plo:pcbi00:1001045","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1001045","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:b719dc722ed64f1c995aec9525e3ec6d","is_oa":true,"landing_page_url":"https://doaj.org/article/b719dc722ed64f1c995aec9525e3ec6d","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 7, Iss 1, p e1001045 (2011)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/139671","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/A_Comprehensive_Model_of_the_Spatio_Temporal_Stem_Cell_and_Tissue_Organisation_in_the_Intestinal_Crypt/139671","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:3017108","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3017108","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:pure.knaw.nl:Publications/7d8c9c48-4001-448e-a343-139053c1b797","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401286","display_name":"KNAW research portal (Royal Academy of Art and Sciences (KNAW))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:pure.knaw.nl:openaire_cris_publications/7d8c9c48-4001-448e-a343-139053c1b797","is_oa":true,"landing_page_url":"https://hdl.handle.net/20.500.11755/7d8c9c48-4001-448e-a343-139053c1b797","pdf_url":null,"source":{"id":"https://openalex.org/S4306400439","display_name":"KNAW Research Portal (The Royal Netherlands Academy of Arts and Sciences)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Buske, P, Galle, J, Barker, N, Aust, G, Clevers, H & Loeffler, M 2011, 'A comprehensive model of the spatio-temporal stem cell and tissue organisation in the intestinal crypt', PLoS Computational Biology, vol. 7, no. 1, pp. 1001045. https://doi.org/10.1371/journal.pcbi.1001045","raw_type":"article"},{"id":"pmh:oai:qucosa:de:qucosa:11415","is_oa":true,"landing_page_url":"http://ul.qucosa.de/id/qucosa%3A11415","pdf_url":null,"source":{"id":"https://openalex.org/S4377196312","display_name":"Qucosa (Saxon State and University Library Dresden)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I3132420320","host_organization_name":"SLUB Dresden","host_organization_lineage":["https://openalex.org/I3132420320"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"doc-type:Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1001045","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1001045","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1001045&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2171913567.pdf","grobid_xml":"https://content.openalex.org/works/W2171913567.grobid-xml"},"referenced_works_count":77,"referenced_works":["https://openalex.org/W1490477296","https://openalex.org/W1617597216","https://openalex.org/W1825181082","https://openalex.org/W1965157206","https://openalex.org/W1968771450","https://openalex.org/W1969589951","https://openalex.org/W1977480736","https://openalex.org/W1981542341","https://openalex.org/W1982603620","https://openalex.org/W1990234992","https://openalex.org/W1993748871","https://openalex.org/W1995060691","https://openalex.org/W1997313701","https://openalex.org/W1999316583","https://openalex.org/W2002223490","https://openalex.org/W2002547558","https://openalex.org/W2003299661","https://openalex.org/W2005690646","https://openalex.org/W2013351311","https://openalex.org/W2013587414","https://openalex.org/W2017971377","https://openalex.org/W2024997708","https://openalex.org/W2026111069","https://openalex.org/W2032800619","https://openalex.org/W2033108841","https://openalex.org/W2036143033","https://openalex.org/W2038547468","https://openalex.org/W2042082068","https://openalex.org/W2042275920","https://openalex.org/W2043854809","https://openalex.org/W2043865723","https://openalex.org/W2046409965","https://openalex.org/W2053611966","https://openalex.org/W2056426272","https://openalex.org/W2058324879","https://openalex.org/W2058564254","https://openalex.org/W2060034144","https://openalex.org/W2064085595","https://openalex.org/W2064552055","https://openalex.org/W2064579758","https://openalex.org/W2065027194","https://openalex.org/W2065387006","https://openalex.org/W2065820769","https://openalex.org/W2067526109","https://openalex.org/W2067911884","https://openalex.org/W2078591745","https://openalex.org/W2080506450","https://openalex.org/W2081471404","https://openalex.org/W2090418224","https://openalex.org/W2090562908","https://openalex.org/W2114018525","https://openalex.org/W2125311914","https://openalex.org/W2131250960","https://openalex.org/W2132780101","https://openalex.org/W2133613843","https://openalex.org/W2133899877","https://openalex.org/W2135715423","https://openalex.org/W2137790111","https://openalex.org/W2138215603","https://openalex.org/W2142507929","https://openalex.org/W2144459759","https://openalex.org/W2146435848","https://openalex.org/W2148459495","https://openalex.org/W2151153556","https://openalex.org/W2152501601","https://openalex.org/W2153063790","https://openalex.org/W2159155233","https://openalex.org/W2160127198","https://openalex.org/W2164479709","https://openalex.org/W2164712741","https://openalex.org/W2165087323","https://openalex.org/W2171531225","https://openalex.org/W2171996338","https://openalex.org/W2184777517","https://openalex.org/W2407306176","https://openalex.org/W4239500372","https://openalex.org/W6636523273"],"related_works":["https://openalex.org/W2013320174","https://openalex.org/W1992711930","https://openalex.org/W2113905655","https://openalex.org/W2124501605","https://openalex.org/W1522190715","https://openalex.org/W2003155683","https://openalex.org/W2580688991","https://openalex.org/W2025685241","https://openalex.org/W2114881954","https://openalex.org/W1988248798"],"abstract_inverted_index":{"We":[0,114],"introduce":[1],"a":[2,28],"novel":[3],"dynamic":[4,64],"model":[5,26,55],"of":[6,23,31,58,66,85,101,107,111,128,143],"stem":[7,137,145],"cell":[8,37,40,43,77,146],"and":[9,20,46,61,79,91,99],"tissue":[10,21,69,109,118,144],"organisation":[11,110],"in":[12],"murine":[13],"intestinal":[14,68],"crypts.":[15],"Integrating":[16],"the":[17,54,63,67,112,117],"molecular,":[18],"cellular":[19,102,129],"level":[22],"description,":[24],"this":[25],"links":[27],"broad":[29],"spectrum":[30],"experimental":[32],"observations":[33],"encompassing":[34],"spatially":[35],"confined":[36],"proliferation,":[38],"directed":[39],"migration,":[41],"multiple":[42],"lineage":[44],"decisions":[45,103],"clonal":[47],"competition.Using":[48],"computational":[49],"simulations":[50],"we":[51],"demonstrate":[52],"that":[53,97,116],"is":[56],"capable":[57],"quantitatively":[59],"describing":[60],"predicting":[62],"behaviour":[65],"during":[70],"steady":[71],"state":[72],"as":[73,75],"well":[74],"after":[76,125],"damage":[78],"following":[80],"selective":[81],"gain":[82],"or":[83],"loss":[84],"gene":[86],"function":[87],"manipulations":[88],"affecting":[89],"Wnt-":[90],"Notch-signalling.":[92],"Our":[93],"simulation":[94],"results":[95],"suggest":[96],"reversibility":[98],"flexibility":[100],"are":[104],"key":[105],"elements":[106],"robust":[108],"intestine.":[113],"predict":[115],"should":[119],"be":[120,135],"able":[121],"to":[122,134],"fully":[123],"recover":[124],"complete":[126],"elimination":[127],"subpopulations":[130,132],"including":[131],"deemed":[133],"functional":[136],"cells.":[138],"This":[139],"challenges":[140],"current":[141],"views":[142],"organisation.":[147]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":12},{"year":2017,"cited_by_count":16},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":13},{"year":2014,"cited_by_count":15},{"year":2013,"cited_by_count":20},{"year":2012,"cited_by_count":14}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
