{"id":"https://openalex.org/W2021068722","doi":"https://doi.org/10.1371/journal.pcbi.1000821","title":"Beauty Is in the Eye of the Beholder: Proteins Can Recognize Binding Sites of Homologous Proteins in More than One Way","display_name":"Beauty Is in the Eye of the Beholder: Proteins Can Recognize Binding Sites of Homologous Proteins in More than One Way","publication_year":2010,"publication_date":"2010-06-17","ids":{"openalex":"https://openalex.org/W2021068722","doi":"https://doi.org/10.1371/journal.pcbi.1000821","mag":"2021068722","pmid":"https://pubmed.ncbi.nlm.nih.gov/20585553"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1000821","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1000821","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000821&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000821&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026973395","display_name":"Juliette Martin","orcid":"https://orcid.org/0000-0002-4787-0885"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210087293","display_name":"Institut de Biologie et de Chimie des Prot\u00e9ines","ror":"https://ror.org/0019x5d05","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I203339264","https://openalex.org/I4210087293","https://openalex.org/I4210096427"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Juliette Martin","raw_affiliation_strings":["Universit\u00e9 de Lyon, Lyon, France; Universit\u00e9 Lyon 1, IFR 128, CNRS, UMR 5086 Institut de Biologie et Chimie des Prot\u00e9ines (IBCP), Lyon, France. juliette.martin@ibcp.fr","Universit\u00e9 Lyon 1, IFR 128, CNRS, UMR 5086 Institut de Biologie et Chimie des Prot\u00e9ines (IBCP), Lyon, France","Universit\u00e9 de Lyon, Lyon, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Lyon, Lyon, France; Universit\u00e9 Lyon 1, IFR 128, CNRS, UMR 5086 Institut de Biologie et Chimie des Prot\u00e9ines (IBCP), Lyon, France. juliette.martin@ibcp.fr","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210087293"]},{"raw_affiliation_string":"Universit\u00e9 Lyon 1, IFR 128, CNRS, UMR 5086 Institut de Biologie et Chimie des Prot\u00e9ines (IBCP), Lyon, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210087293"]},{"raw_affiliation_string":"Universit\u00e9 de Lyon, Lyon, France","institution_ids":["https://openalex.org/I100532134"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5026973395"],"corresponding_institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210087293"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.3697,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.79171635,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"6","issue":"6","first_page":"e1000821","last_page":"e1000821"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/homologous-chromosome","display_name":"Homologous chromosome","score":0.8107961416244507},{"id":"https://openalex.org/keywords/protein-superfamily","display_name":"Protein superfamily","score":0.7336626648902893},{"id":"https://openalex.org/keywords/homologous-recombination","display_name":"Homologous recombination","score":0.4574522078037262},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4527741074562073},{"id":"https://openalex.org/keywords/dna-binding-protein","display_name":"DNA-binding protein","score":0.4125632047653198},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4009765684604645},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.36505186557769775},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.15714088082313538},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12787586450576782},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.09254053235054016}],"concepts":[{"id":"https://openalex.org/C64894306","wikidata":"https://www.wikidata.org/wiki/Q849622","display_name":"Homologous chromosome","level":3,"score":0.8107961416244507},{"id":"https://openalex.org/C178180057","wikidata":"https://www.wikidata.org/wiki/Q7251477","display_name":"Protein superfamily","level":3,"score":0.7336626648902893},{"id":"https://openalex.org/C102744134","wikidata":"https://www.wikidata.org/wiki/Q22280388","display_name":"Homologous recombination","level":3,"score":0.4574522078037262},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4527741074562073},{"id":"https://openalex.org/C94966510","wikidata":"https://www.wikidata.org/wiki/Q2252764","display_name":"DNA-binding protein","level":4,"score":0.4125632047653198},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4009765684604645},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.36505186557769775},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.15714088082313538},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12787586450576782},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.09254053235054016}],"mesh":[{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005656","descriptor_name":"Fungal Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1371/journal.pcbi.1000821","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1000821","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000821&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:20585553","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20585553","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2887470","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2887470","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.354.9688","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.354.9688","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/1a/92/PLoS_Comput_Biol_2010_Jun_17_6(6)_e1000821.tar.gz","raw_type":"text"},{"id":"pmh:oai:doaj.org/article:0bab9ca609164df5bfaca2be895bbfc1","is_oa":true,"landing_page_url":"https://doaj.org/article/0bab9ca609164df5bfaca2be895bbfc1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 6, Iss 6, p e1000821 (2010)","raw_type":"article"},{"id":"pmh:oai:figshare.com:article/142996","is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Beauty_Is_in_the_Eye_of_the_Beholder_Proteins_Can_Recognize_Binding_Sites_of_Homologous_Proteins_in_More_than_One_Way/142996","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1000821","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1000821","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1000821&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2021068722.pdf","grobid_xml":"https://content.openalex.org/works/W2021068722.grobid-xml"},"referenced_works_count":80,"referenced_works":["https://openalex.org/W255996521","https://openalex.org/W1585234850","https://openalex.org/W1792865908","https://openalex.org/W1896955993","https://openalex.org/W1963538288","https://openalex.org/W1969589458","https://openalex.org/W1970514185","https://openalex.org/W1974156712","https://openalex.org/W1977845138","https://openalex.org/W1981254997","https://openalex.org/W1981869064","https://openalex.org/W1985153601","https://openalex.org/W1985222378","https://openalex.org/W1985563952","https://openalex.org/W1986046522","https://openalex.org/W1986969007","https://openalex.org/W1997803213","https://openalex.org/W2006398943","https://openalex.org/W2010485601","https://openalex.org/W2023370650","https://openalex.org/W2027631886","https://openalex.org/W2030885701","https://openalex.org/W2031772330","https://openalex.org/W2038919556","https://openalex.org/W2039928024","https://openalex.org/W2043619921","https://openalex.org/W2044172420","https://openalex.org/W2045197143","https://openalex.org/W2046407284","https://openalex.org/W2048792959","https://openalex.org/W2051710717","https://openalex.org/W2051895548","https://openalex.org/W2053803268","https://openalex.org/W2054467356","https://openalex.org/W2058017150","https://openalex.org/W2065306175","https://openalex.org/W2073911195","https://openalex.org/W2085277871","https://openalex.org/W2087744067","https://openalex.org/W2092189515","https://openalex.org/W2093642677","https://openalex.org/W2094090446","https://openalex.org/W2096039340","https://openalex.org/W2097303612","https://openalex.org/W2098869926","https://openalex.org/W2102333330","https://openalex.org/W2103210604","https://openalex.org/W2105095869","https://openalex.org/W2105525514","https://openalex.org/W2108302275","https://openalex.org/W2108862316","https://openalex.org/W2110591305","https://openalex.org/W2115451817","https://openalex.org/W2117164735","https://openalex.org/W2117923629","https://openalex.org/W2123032501","https://openalex.org/W2126213001","https://openalex.org/W2128276810","https://openalex.org/W2130479394","https://openalex.org/W2130638985","https://openalex.org/W2133591516","https://openalex.org/W2135703599","https://openalex.org/W2135900956","https://openalex.org/W2136206140","https://openalex.org/W2138770756","https://openalex.org/W2141624700","https://openalex.org/W2144771143","https://openalex.org/W2146940292","https://openalex.org/W2150444353","https://openalex.org/W2152281406","https://openalex.org/W2152444476","https://openalex.org/W2152500739","https://openalex.org/W2153463820","https://openalex.org/W2156379460","https://openalex.org/W2163740345","https://openalex.org/W2164391585","https://openalex.org/W2166186928","https://openalex.org/W2170968124","https://openalex.org/W4252827053","https://openalex.org/W6609701964"],"related_works":["https://openalex.org/W2035193123","https://openalex.org/W2592521050","https://openalex.org/W2585977452","https://openalex.org/W92481816","https://openalex.org/W2417401497","https://openalex.org/W4232211552","https://openalex.org/W2025015409","https://openalex.org/W2385630062","https://openalex.org/W4236060908","https://openalex.org/W2066999586"],"abstract_inverted_index":{"Understanding":[0],"the":[1,70,86,92,98,104,114,131,143,148,153,156,160,164,169,186,202,221,236],"mechanisms":[2],"of":[3,36,40,66,88,103,133,155,171,205,215,217],"protein-protein":[4,67,99],"interaction":[5],"is":[6,139,174,227],"a":[7,80,119,125,212],"fundamental":[8],"problem":[9],"with":[10,44,136,243],"many":[11],"practical":[12],"applications.":[13],"The":[14],"fact":[15],"that":[16,24,130,168,189,224,238],"different":[17,32,239],"proteins":[18,145,188,240],"can":[19,241],"bind":[20,190],"similar":[21,111,137,244],"partners":[22,46,102,245],"suggests":[23],"convergently":[25],"evolved":[26],"binding":[27,49,172,203],"interfaces":[28],"are":[29,198],"reused":[30],"in":[31,53,142,147],"complexes.":[33],"A":[34],"set":[35],"protein":[37,77],"complexes":[38,68,78,105],"composed":[39],"non-homologous":[41,144,187,206],"domains":[42],"interacting":[43],"homologous":[45,81,149,178,192],"at":[47,91,97,113,163,220],"equivalent":[48],"sites":[50,173,204],"was":[51],"collected":[52],"2006,":[54],"offering":[55],"an":[56],"opportunity":[57],"to":[58,191],"investigate":[59],"this":[60,225],"point.":[61],"We":[62,128,151,166,208],"considered":[63],"433":[64],"pairs":[65],"from":[69],"ABAC":[71],"database":[72],"(AB":[73],"and":[74,84,94,110,124],"AC":[75],"binary":[76],"sharing":[79],"partner":[82],"A)":[83],"analyzed":[85],"extent":[87],"physico-chemical":[89],"similarity":[90,157,170],"atomic":[93,161],"residue":[95],"level":[96],"interface.":[100],"Homologous":[101],"were":[106,116],"superimposed":[107],"using":[108,118,246],"Multiprot,":[109],"atoms":[112,135],"interface":[115],"quantified":[117],"five":[120],"class":[121],"grouping":[122],"scheme":[123],"distance":[126],"cut-off.":[127],"found":[129,167],"number":[132,214],"interfacial":[134],"properties":[138,162],"systematically":[140],"lower":[141],"than":[146,230],"ones.":[150],"assessed":[152],"significance":[154],"by":[158],"bootstrapping":[159],"interfaces.":[165],"very":[175],"significant":[176],"between":[177,185],"proteins,":[179],"as":[180],"expected,":[181],"but":[182,249],"generally":[183],"insignificant":[184],"partners.":[193],"Furthermore,":[194],"evolutionarily":[195],"conserved":[196],"residues":[197],"not":[199,251],"colocalized":[200],"within":[201],"proteins.":[207],"could":[209],"only":[210],"identify":[211],"limited":[213],"cases":[216],"structural":[218],"mimicry":[219],"interface,":[222],"suggesting":[223],"property":[226],"less":[228],"generic":[229],"previously":[231],"thought.":[232],"Our":[233],"results":[234],"support":[235,252],"hypothesis":[237],"interact":[242],"alternate":[247],"strategies,":[248],"do":[250],"convergent":[253],"evolution.":[254]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2012,"cited_by_count":5}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
