{"id":"https://openalex.org/W2000622980","doi":"https://doi.org/10.1371/journal.pcbi.0030167","title":"Functional Representation of Enzymes by Specific Peptides","display_name":"Functional Representation of Enzymes by Specific Peptides","publication_year":2007,"publication_date":"2007-08-22","ids":{"openalex":"https://openalex.org/W2000622980","doi":"https://doi.org/10.1371/journal.pcbi.0030167","mag":"2000622980","pmid":"https://pubmed.ncbi.nlm.nih.gov/17722976"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.0030167","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.0030167","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0030167&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0030167&type=printable","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083755448","display_name":"Vered Kunik","orcid":null},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Vered Kunik","raw_affiliation_strings":["School of Computer Science, Tel Aviv University, Tel Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Tel Aviv University, Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091659051","display_name":"Yasmine Meroz","orcid":"https://orcid.org/0000-0003-4752-0372"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Yasmine Meroz","raw_affiliation_strings":["School of Physics and Astronomy, Tel Aviv University, Tel Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"School of Physics and Astronomy, Tel Aviv University, Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083089139","display_name":"Zach Solan","orcid":null},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Zach Solan","raw_affiliation_strings":["School of Physics and Astronomy, Tel Aviv University, Tel Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"School of Physics and Astronomy, Tel Aviv University, Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043599596","display_name":"Ben Sandbank","orcid":null},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Ben Sandbank","raw_affiliation_strings":["School of Computer Science, Tel Aviv University, Tel Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Tel Aviv University, Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069478161","display_name":"Uri Weingart","orcid":null},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Uri Weingart","raw_affiliation_strings":["School of Physics and Astronomy, Tel Aviv University, Tel Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"School of Physics and Astronomy, Tel Aviv University, Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063492133","display_name":"Eytan Ruppin","orcid":"https://orcid.org/0000-0002-7862-3940"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Eytan Ruppin","raw_affiliation_strings":["","Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel","School of Computer Science, Tel Aviv University, Tel Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"","institution_ids":[]},{"raw_affiliation_string":"Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]},{"raw_affiliation_string":"School of Computer Science, Tel Aviv University, Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001249894","display_name":"D. Horn","orcid":"https://orcid.org/0000-0003-2708-186X"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"David Horn","raw_affiliation_strings":["School of Physics and Astronomy, Tel Aviv University, Tel Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"School of Physics and Astronomy, Tel Aviv University, Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5001249894"],"corresponding_institution_ids":["https://openalex.org/I16391192"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":1.42615593,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.77341106,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"3","issue":"8","first_page":"e167","last_page":"e167"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5533457398414612},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5144631862640381},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.37569329142570496},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3637726902961731},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3531486690044403},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3451121747493744},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.33593738079071045}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5533457398414612},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5144631862640381},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.37569329142570496},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3637726902961731},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3531486690044403},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3451121747493744},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.33593738079071045},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013329","descriptor_name":"Structure-Activity Relationship","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020816","descriptor_name":"Amino Acid Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1371/journal.pcbi.0030167","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.0030167","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0030167&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},{"id":"pmid:17722976","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17722976","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:RePEc:plo:pcbi00:0030167","is_oa":false,"landing_page_url":"https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.0030167","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:9dd7f5b710ae4b52aff919d131eb04a7","is_oa":true,"landing_page_url":"https://doaj.org/article/9dd7f5b710ae4b52aff919d131eb04a7","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 3, Iss 8, p e167 (2007)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2622398","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC1950953","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/151813","is_oa":true,"landing_page_url":"https://figshare.com/articles/Functional_Representation_of_Enzymes_by_Specific_Peptides/151813","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:1950953","is_oa":true,"landing_page_url":"http://doi.org/10.1371/journal.pcbi.0030167","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.0030167","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.0030167","pdf_url":"https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.0030167&type=printable","source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2000622980.pdf","grobid_xml":"https://content.openalex.org/works/W2000622980.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W20514746","https://openalex.org/W124504601","https://openalex.org/W269505060","https://openalex.org/W339865234","https://openalex.org/W1519739439","https://openalex.org/W1955025754","https://openalex.org/W1973714307","https://openalex.org/W1984794455","https://openalex.org/W1987319986","https://openalex.org/W2001818631","https://openalex.org/W2019019284","https://openalex.org/W2020257412","https://openalex.org/W2057508801","https://openalex.org/W2086770662","https://openalex.org/W2087064593","https://openalex.org/W2097542211","https://openalex.org/W2099982459","https://openalex.org/W2100320834","https://openalex.org/W2110065044","https://openalex.org/W2110863368","https://openalex.org/W2115595474","https://openalex.org/W2117019496","https://openalex.org/W2127464112","https://openalex.org/W2129368756","https://openalex.org/W2139322220","https://openalex.org/W2139942857","https://openalex.org/W2143011057","https://openalex.org/W2143173841","https://openalex.org/W2143296986","https://openalex.org/W2158714788","https://openalex.org/W2165495989","https://openalex.org/W2165979580","https://openalex.org/W2167318540","https://openalex.org/W3021613818"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W2117258802","https://openalex.org/W4234157524"],"abstract_inverted_index":{"Predicting":[0],"the":[1,20,56,59,64,81,89,125,137,174,205,208,247],"function":[2,153,250],"of":[3,13,42,63,80,107,127,129,139,173,207,212,223],"a":[4,10,38,190,235],"protein":[5],"from":[6],"its":[7],"sequence":[8,17,28,99,166],"is":[9,19,133],"long-standing":[11],"goal":[12],"bioinformatic":[14],"research.":[15],"While":[16],"similarity":[18,167],"most":[21,172],"popular":[22],"tool":[23,238],"used":[24],"for":[25,239,246],"this":[26,33],"purpose,":[27],"motifs":[29,70,108],"may":[30],"also":[31],"subserve":[32],"goal.":[34],"Here":[35],"we":[36],"develop":[37],"motif-based":[39,87],"method":[40,91],"consisting":[41],"applying":[43],"an":[44,159],"unsupervised":[45],"motif":[46],"extraction":[47],"algorithm":[48],"(MEX)":[49],"to":[50,85,199,204],"all":[51,130],"enzyme":[52,229,240],"sequences,":[53],"and":[54,123,156,177,182,243],"filtering":[55,211],"results":[57,218],"by":[58,97,142,214,253],"four-level":[60],"classification":[61,147,242],"hierarchy":[62],"Enzyme":[65],"Commission":[66],"(EC).":[67],"The":[68,112,145,195],"resulting":[69],"serve":[71],"as":[72],"specific":[73],"peptides":[74],"(SPs),":[75],"appearing":[76],"on":[77,105,116],"single":[78],"branches":[79],"EC.":[82],"In":[83],"contrast":[84],"previous":[86,152],"methods,":[88],"new":[90],"does":[92,102],"not":[93],"require":[94],"any":[95],"preprocessing":[96],"multiple":[98],"alignment,":[100],"nor":[101],"it":[103],"rely":[104],"over-representation":[106],"within":[109],"EC":[110],"branches.":[111],"SPs":[113,170,213,224,232],"obtained":[114],"comprise":[115],"average":[117],"8.4":[118],"+/-":[119],"4.5":[120],"amino":[121,180],"acids,":[122,181],"specify":[124],"functions":[126],"93%":[128],"enzymes,":[131],"which":[132],"much":[134],"higher":[135],"than":[136],"coverage":[138],"63%":[140],"provided":[141],"ProSite":[143],"motifs.":[144],"SP":[146],"thus":[148],"compares":[149],"favorably":[150],"with":[151],"annotation":[154],"methods":[155],"successfully":[157],"demonstrates":[158],"added":[160],"value":[161],"in":[162,184,189,219],"extreme":[163],"cases":[164],"where":[165],"fails.":[168],"Interestingly,":[169],"cover":[171],"annotated":[175],"active":[176],"binding":[178],"site":[179],"occur":[183],"active-site":[185],"neighboring":[186],"3-D":[187],"pockets":[188],"highly":[191],"statistically":[192],"significant":[193],"manner.":[194],"latter":[196],"are":[197],"assumed":[198],"have":[200],"strong":[201],"biological":[202,215,249],"relevance":[203],"activity":[206],"enzyme.":[209],"Further":[210],"functional":[216,241],"annotations":[217],"reduced":[220],"small":[221],"subsets":[222],"that":[225],"possess":[226],"very":[227,236],"large":[228],"coverage.":[230],"Overall,":[231],"both":[233],"form":[234],"useful":[237],"bear":[244],"responsibility":[245],"catalytic":[248],"carried":[251],"out":[252],"enzymes.":[254]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-02-12T00:53:03.260389","created_date":"2025-10-10T00:00:00"}
