{"id":"https://openalex.org/W7129538981","doi":"https://doi.org/10.1371/journal.pcbi.1013869","title":"Ten common misconceptions about Galaxy (and why they are wrong!)","display_name":"Ten common misconceptions about Galaxy (and why they are wrong!)","publication_year":2026,"publication_date":"2026-02-17","ids":{"openalex":"https://openalex.org/W7129538981","doi":"https://doi.org/10.1371/journal.pcbi.1013869","pmid":"https://pubmed.ncbi.nlm.nih.gov/41701727"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1013869","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1013869","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1013869","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5126208390","display_name":"Wendi Anne Bacon","orcid":null},"institutions":[{"id":"https://openalex.org/I204136569","display_name":"The Open University","ror":"https://ror.org/05mzfcs16","country_code":"GB","type":"education","lineage":["https://openalex.org/I204136569"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Wendi Anne Bacon","raw_affiliation_strings":["Life Health & Chemical Sciences, The Open University, Milton Keynes, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0002-8170-8806","affiliations":[{"raw_affiliation_string":"Life Health & Chemical Sciences, The Open University, Milton Keynes, United Kingdom","institution_ids":["https://openalex.org/I204136569"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5122693662","display_name":"B\u00e9r\u00e9nice Batut","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210138994","display_name":"Institut Fran\u00e7ais de Bioinformatique","ror":"https://ror.org/045f7pv37","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210138994"]},{"id":"https://openalex.org/I4210143836","display_name":"Clermont Universit\u00e9","ror":"https://ror.org/03yf5zr20","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210143836"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"B\u00e9r\u00e9nice Batut","raw_affiliation_strings":["IFB-core, Institut Fran\u00e7ais de Bioinformatique (IFB), CNRS, INSERM, INRAE, CEA, Villejuif, France","Plateforme AuBi, M\u00e9socentre Clermont-Auvergne, Universit\u00e9 Clermont Auvergne, Aubi\u00e8re, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IFB-core, Institut Fran\u00e7ais de Bioinformatique (IFB), CNRS, INSERM, INRAE, CEA, Villejuif, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210138994","https://openalex.org/I154526488","https://openalex.org/I2738703131","https://openalex.org/I4210088668"]},{"raw_affiliation_string":"Plateforme AuBi, M\u00e9socentre Clermont-Auvergne, Universit\u00e9 Clermont Auvergne, Aubi\u00e8re, France","institution_ids":["https://openalex.org/I4210143836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126199305","display_name":"Sanjay Kumar Srikakulam","orcid":null},"institutions":[{"id":"https://openalex.org/I204136569","display_name":"The Open University","ror":"https://ror.org/05mzfcs16","country_code":"GB","type":"education","lineage":["https://openalex.org/I204136569"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sanjay Kumar Srikakulam","raw_affiliation_strings":["Life Health & Chemical Sciences, The Open University, Milton Keynes, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Life Health & Chemical Sciences, The Open University, Milton Keynes, United Kingdom","institution_ids":["https://openalex.org/I204136569"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Paul Zierep","orcid":null},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Paul Zierep","raw_affiliation_strings":["Albert-Ludwigs-Universit\u00e4t Freiburg: Freiburg im Breisgau, Baden-W\u00fcrttemberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Albert-Ludwigs-Universit\u00e4t Freiburg: Freiburg im Breisgau, Baden-W\u00fcrttemberg, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003706908","display_name":"Anthony Bretaudeau","orcid":"https://orcid.org/0000-0003-0914-2470"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Anthony Bretaudeau","raw_affiliation_strings":["GenOuest, Univ Rennes, Inria, CNRS, IRISA, Rennes, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"GenOuest, Univ Rennes, Inria, CNRS, IRISA, Rennes, France","institution_ids":["https://openalex.org/I2802519937","https://openalex.org/I56067802","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007199315","display_name":"B Gr\u00fcning","orcid":null},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bj\u00f6rn Gr\u00fcning","raw_affiliation_strings":["Albert-Ludwigs-Universit\u00e4t Freiburg: Freiburg im Breisgau, Baden-W\u00fcrttemberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Albert-Ludwigs-Universit\u00e4t Freiburg: Freiburg im Breisgau, Baden-W\u00fcrttemberg, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126212522","display_name":"Gildas Le Corguill\u00e9","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2802436875","display_name":"Station Biologique de Roscoff","ror":"https://ror.org/03s0pzj56","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I2802436875","https://openalex.org/I39804081","https://openalex.org/I4210107625"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Gildas Le Corguill\u00e9","raw_affiliation_strings":["ABiMS Platform, Station Biologique de Roscoff, CNRS, Sorbonne Universit\u00e9, Roscoff, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ABiMS Platform, Station Biologique de Roscoff, CNRS, Sorbonne Universit\u00e9, Roscoff, France","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I2802436875","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126274903","display_name":"Helge Hecht","orcid":null},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Helge Hecht","raw_affiliation_strings":["Faculty of Science, Masaryk University, RECETOX, Brno, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Science, Masaryk University, RECETOX, Brno, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":null,"display_name":"John Y. Davis","orcid":"https://orcid.org/0000-0002-1363-1245"},"institutions":[{"id":"https://openalex.org/I145311948","display_name":"Johns Hopkins University","ror":"https://ror.org/00za53h95","country_code":"US","type":"education","lineage":["https://openalex.org/I145311948"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Y. Davis","raw_affiliation_strings":["Department of Biology, Johns Hopkins University, Baltimore, Maryland, United States of America"],"raw_orcid":"https://orcid.org/0000-0002-1363-1245","affiliations":[{"raw_affiliation_string":"Department of Biology, Johns Hopkins University, Baltimore, Maryland, United States of America","institution_ids":["https://openalex.org/I145311948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126215723","display_name":"Hans-Rudolf Hotz","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I860889466","display_name":"Friedrich Miescher Institute","ror":"https://ror.org/01bmjkv45","country_code":"CH","type":"facility","lineage":["https://openalex.org/I860889466"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Hans-Rudolf Hotz","raw_affiliation_strings":["Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland","SIB Swiss Institute of Bioinformatics, Basel, Switzerland"],"raw_orcid":"https://orcid.org/0000-0002-2799-424X","affiliations":[{"raw_affiliation_string":"Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland","institution_ids":["https://openalex.org/I860889466"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Basel, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5126198476","display_name":"Beatriz Serrano-Solano","orcid":null},"institutions":[{"id":"https://openalex.org/I1303691731","display_name":"European Molecular Biology Organization","ror":"https://ror.org/04wfr2810","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I1303691731"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Beatriz Serrano-Solano","raw_affiliation_strings":["Euro-BioImaging ERIC Bio-Hub, EMBL Heidelberg, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Euro-BioImaging ERIC Bio-Hub, EMBL Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I1303691731"]}]}],"institutions":[],"countries_distinct_count":6,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5126208390"],"corresponding_institution_ids":["https://openalex.org/I204136569"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.30097952,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"22","issue":"2","first_page":"e1013869","last_page":"e1013869"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.590399980545044,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.590399980545044,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.0934000015258789,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.07649999856948853,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.6759999990463257},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6571999788284302},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6119999885559082},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.588699996471405},{"id":"https://openalex.org/keywords/galaxy","display_name":"Galaxy","score":0.5072000026702881},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4864000082015991}],"concepts":[{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.6759999990463257},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6730999946594238},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6571999788284302},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6119999885559082},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.588699996471405},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5526999831199646},{"id":"https://openalex.org/C98444146","wikidata":"https://www.wikidata.org/wiki/Q318","display_name":"Galaxy","level":2,"score":0.5072000026702881},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4864000082015991},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.38760000467300415},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.3605000078678131},{"id":"https://openalex.org/C197352329","wikidata":"https://www.wikidata.org/wiki/Q1093434","display_name":"Citizen science","level":2,"score":0.3093999922275543},{"id":"https://openalex.org/C24756922","wikidata":"https://www.wikidata.org/wiki/Q1757694","display_name":"Data quality","level":3,"score":0.2816999852657318},{"id":"https://openalex.org/C2777798969","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Assemblage (archaeology)","level":2,"score":0.25189998745918274}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1371/journal.pcbi.1013869","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1013869","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:41701727","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41701727","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:oro.open.ac.uk:108670","is_oa":true,"landing_page_url":"https://oro.open.ac.uk/view/person/wb2845.html>;","pdf_url":"https://oro.open.ac.uk/108670/1/108670.pdf","source":{"id":"https://openalex.org/S4306401187","display_name":"Open Research Online (The Open University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I204136569","host_organization_name":"The Open University","host_organization_lineage":["https://openalex.org/I204136569"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:HAL:hal-05563178v1","is_oa":false,"landing_page_url":"https://hal.science/hal-05563178","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, 2026, 22 (2), pp.e1013869. &#x27E8;10.1371/journal.pcbi.1013869&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:doaj.org/article:bcbb6b31a842412d8bd98a74d89fe120","is_oa":true,"landing_page_url":"https://doaj.org/article/bcbb6b31a842412d8bd98a74d89fe120","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 22, Iss 2, p e1013869 (2026)","raw_type":"article"},{"id":"pmh:oai:freidok.uni-freiburg.de:277494","is_oa":false,"landing_page_url":"https://freidok.uni-freiburg.de/data/277494","pdf_url":null,"source":{"id":"https://openalex.org/S4306401057","display_name":"FreiDok plus (Universit\u00e4tsbibliothek Freiburg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I161046081","host_organization_name":"University of Freiburg","host_organization_lineage":["https://openalex.org/I161046081"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS computational biology. - 22, 2 (2026) , e1013869, ISSN: 1553-7358","raw_type":"article"},{"id":"pmh:oai:is.muni.cz:2557261","is_oa":true,"landing_page_url":"https://is.muni.cz/publication/2557261","pdf_url":null,"source":{"id":"https://openalex.org/S4306400102","display_name":"Ve\u0159ejn\u00e9 slu\u017eby Informa\u010dn\u00edho syst\u00e9mu (Masarykiana Brunensis Universitas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Plos Computational Biology","raw_type":"J"},{"id":"pmh:oai:pubmedcentral.nih.gov:12912617","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12912617/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Comput Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1013869","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1013869","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2431772652","display_name":null,"funder_award_id":"031 A538A","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G3379996367","display_name":null,"funder_award_id":"U24HG006620, U24HG010263, U24AI183870, U24CA284167, and OT2OD037936","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5802621812","display_name":null,"funder_award_id":"ANR-11-INBS","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G6068764742","display_name":null,"funder_award_id":"ANR-11-INBS-0013","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7637189884","display_name":null,"funder_award_id":"031 A538A de.NBI-RBC","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320330124","display_name":"German Network for Bioinformatics Infrastructure","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W2144610372","https://openalex.org/W2149309843","https://openalex.org/W2161645441","https://openalex.org/W2604622795","https://openalex.org/W2615569809","https://openalex.org/W2765209352","https://openalex.org/W2765745983","https://openalex.org/W2917207851","https://openalex.org/W3107034655","https://openalex.org/W3127029381","https://openalex.org/W3142565858","https://openalex.org/W3198909684","https://openalex.org/W3200776886","https://openalex.org/W3204754419","https://openalex.org/W4200125247","https://openalex.org/W4206499307","https://openalex.org/W4225370538","https://openalex.org/W4313880130","https://openalex.org/W4321791555","https://openalex.org/W4387296449","https://openalex.org/W4391262782","https://openalex.org/W4392868006","https://openalex.org/W4398182689","https://openalex.org/W4401669178","https://openalex.org/W4406152881","https://openalex.org/W4406178881"],"related_works":[],"abstract_inverted_index":{"Galaxy":[0,115],"is":[1,59,66,116],"a":[2,87,117,134],"widely":[3],"used":[4],"open-source":[5,90],"platform":[6,121],"for":[7,69],"accessible,":[8],"reproducible,":[9],"transparent":[10],"and":[11,19,35,39,46,89,109,119,129,150,156],"scalable":[12],"data":[13,79],"analysis":[14,80],"in":[15],"the":[16,55],"life":[17],"sciences":[18],"beyond.":[20],"Despite":[21],"its":[22,31,74],"growing":[23],"adoption":[24],"across":[25,133],"domains,":[26],"several":[27],"misconceptions":[28,50],"persist":[29],"about":[30,51,73],"scope,":[32],"usability,":[33],"scalability":[34],"relevance":[36],"to":[37,61,71,76,145],"academia":[38],"industry.":[40],"In":[41],"this":[42],"manuscript,":[43],"we":[44,143],"identify":[45],"address":[47],"10":[48],"common":[49],"Galaxy,":[52],"ranging":[53],"from":[54],"belief":[56],"that":[57,114],"it":[58],"limited":[60],"genomics,":[62],"lacks":[63],"scalability,":[64],"or":[65,81],"only":[67],"useful":[68],"teaching,":[70],"doubts":[72],"ability":[75],"support":[77],"secure":[78],"maintain":[82],"high":[83],"software":[84],"quality":[85],"as":[86],"free":[88],"project.":[91],"We":[92,112],"refute":[93],"each":[94],"misconception":[95],"with":[96],"present":[97],"evidence":[98],"based":[99],"on":[100],"Galaxy's":[101,154],"technical":[102],"features,":[103],"real-world":[104],"use":[105],"cases,":[106],"user":[107],"communities":[108],"governance":[110],"structures.":[111],"show":[113],"mature":[118],"versatile":[120],"capable":[122],"of":[123,137],"supporting":[124],"cutting-edge":[125],"scientific":[126],"research,":[127],"education":[128],"even":[130],"clinical":[131],"workflows":[132],"wide":[135],"variety":[136],"disciplines.":[138],"By":[139],"clarifying":[140],"existing":[141],"misconceptions,":[142],"aim":[144],"help":[146],"researchers,":[147],"educators,":[148],"developers":[149],"decision-makers":[151],"better":[152],"appreciate":[153],"capabilities":[155],"potential":[157],"within":[158],"their":[159],"fields.":[160]},"counts_by_year":[],"updated_date":"2026-05-05T08:41:31.759640","created_date":"2026-02-18T00:00:00"}
