{"id":"https://openalex.org/W4415747634","doi":"https://doi.org/10.1371/journal.pcbi.1013641","title":"Time-dependent computational model of post-traumatic osteoarthritis to estimate how mechanoinflammatory mechanisms impact cartilage aggrecan content","display_name":"Time-dependent computational model of post-traumatic osteoarthritis to estimate how mechanoinflammatory mechanisms impact cartilage aggrecan content","publication_year":2025,"publication_date":"2025-10-31","ids":{"openalex":"https://openalex.org/W4415747634","doi":"https://doi.org/10.1371/journal.pcbi.1013641","pmid":"https://pubmed.ncbi.nlm.nih.gov/41171940"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pcbi.1013641","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1013641","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pcbi.1013641","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087590885","display_name":"Atte S. A. Eskelinen","orcid":"https://orcid.org/0000-0003-1516-3083"},"institutions":[{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Atte S. A. Eskelinen","raw_affiliation_strings":["Department of Technical Physics, University of Eastern Finland, Kuopio, Finland"],"raw_orcid":"https://orcid.org/0000-0003-1516-3083","affiliations":[{"raw_affiliation_string":"Department of Technical Physics, University of Eastern Finland, Kuopio, Finland","institution_ids":["https://openalex.org/I175532246"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090655726","display_name":"Joonas P. Kosonen","orcid":"https://orcid.org/0000-0001-6063-6914"},"institutions":[{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Joonas P. Kosonen","raw_affiliation_strings":["Department of Technical Physics, University of Eastern Finland, Kuopio, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Technical Physics, University of Eastern Finland, Kuopio, Finland","institution_ids":["https://openalex.org/I175532246"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024818126","display_name":"Moustafa Hamada","orcid":"https://orcid.org/0009-0006-4465-8631"},"institutions":[{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Moustafa Hamada","raw_affiliation_strings":["Department of Technical Physics, University of Eastern Finland, Kuopio, Finland"],"raw_orcid":"https://orcid.org/0009-0006-4465-8631","affiliations":[{"raw_affiliation_string":"Department of Technical Physics, University of Eastern Finland, Kuopio, Finland","institution_ids":["https://openalex.org/I175532246"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070117979","display_name":"Amir Esrafilian","orcid":"https://orcid.org/0000-0002-8321-8528"},"institutions":[{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Amir Esrafilian","raw_affiliation_strings":["Department of Technical Physics, University of Eastern Finland, Kuopio, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Technical Physics, University of Eastern Finland, Kuopio, Finland","institution_ids":["https://openalex.org/I175532246"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088628720","display_name":"Cristina Florea","orcid":"https://orcid.org/0000-0001-7719-2600"},"institutions":[{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Cristina Florea","raw_affiliation_strings":["Department of Technical Physics, University of Eastern Finland, Kuopio, Finland"],"raw_orcid":"https://orcid.org/0000-0001-7719-2600","affiliations":[{"raw_affiliation_string":"Department of Technical Physics, University of Eastern Finland, Kuopio, Finland","institution_ids":["https://openalex.org/I175532246"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003974495","display_name":"Alan J. Grodzinsky","orcid":"https://orcid.org/0000-0002-4942-3456"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Alan J. Grodzinsky","raw_affiliation_strings":["Departments of Biological Engineering, Electrical Engineering and Computer Science, and Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departments of Biological Engineering, Electrical Engineering and Computer Science, and Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America","institution_ids":["https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082454261","display_name":"Petri Tanska","orcid":"https://orcid.org/0000-0002-9684-6902"},"institutions":[{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Petri Tanska","raw_affiliation_strings":["Department of Technical Physics, University of Eastern Finland, Kuopio, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Technical Physics, University of Eastern Finland, Kuopio, Finland","institution_ids":["https://openalex.org/I175532246"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022590395","display_name":"Rami K. Korhonen","orcid":"https://orcid.org/0000-0002-3486-7855"},"institutions":[{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Rami K. Korhonen","raw_affiliation_strings":["Department of Technical Physics, University of Eastern Finland, Kuopio, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Technical Physics, University of Eastern Finland, Kuopio, Finland","institution_ids":["https://openalex.org/I175532246"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5003974495","https://openalex.org/A5022590395","https://openalex.org/A5024818126","https://openalex.org/A5070117979","https://openalex.org/A5082454261","https://openalex.org/A5087590885","https://openalex.org/A5088628720","https://openalex.org/A5090655726"],"corresponding_institution_ids":["https://openalex.org/I175532246","https://openalex.org/I63966007"],"apc_list":{"value":2655,"currency":"USD","value_usd":2655},"apc_paid":{"value":2655,"currency":"USD","value_usd":2655},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.43486076,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"21","issue":"10","first_page":"e1013641","last_page":"e1013641"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10105","display_name":"Osteoarthritis Treatment and Mechanisms","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/2745","display_name":"Rheumatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10105","display_name":"Osteoarthritis Treatment and Mechanisms","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/2745","display_name":"Rheumatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11068","display_name":"Tendon Structure and Treatment","score":0.000699999975040555,"subfield":{"id":"https://openalex.org/subfields/2732","display_name":"Orthopedics and Sports Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11018","display_name":"Lower Extremity Biomechanics and Pathologies","score":0.00039999998989515007,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/aggrecan","display_name":"Aggrecan","score":0.9796000123023987},{"id":"https://openalex.org/keywords/aggrecanase","display_name":"Aggrecanase","score":0.8025000095367432},{"id":"https://openalex.org/keywords/osteoarthritis","display_name":"Osteoarthritis","score":0.7674000263214111},{"id":"https://openalex.org/keywords/cartilage","display_name":"Cartilage","score":0.7297000288963318},{"id":"https://openalex.org/keywords/articular-cartilage","display_name":"Articular cartilage","score":0.4172999858856201},{"id":"https://openalex.org/keywords/strain","display_name":"Strain (injury)","score":0.35440000891685486}],"concepts":[{"id":"https://openalex.org/C197534660","wikidata":"https://www.wikidata.org/wiki/Q21121862","display_name":"Aggrecan","level":5,"score":0.9796000123023987},{"id":"https://openalex.org/C2776157581","wikidata":"https://www.wikidata.org/wiki/Q4692239","display_name":"Aggrecanase","level":5,"score":0.8025000095367432},{"id":"https://openalex.org/C2776164576","wikidata":"https://www.wikidata.org/wiki/Q62736","display_name":"Osteoarthritis","level":3,"score":0.7674000263214111},{"id":"https://openalex.org/C2780550940","wikidata":"https://www.wikidata.org/wiki/Q502730","display_name":"Cartilage","level":2,"score":0.7297000288963318},{"id":"https://openalex.org/C136229726","wikidata":"https://www.wikidata.org/wiki/Q327092","display_name":"Biomedical engineering","level":1,"score":0.550000011920929},{"id":"https://openalex.org/C3020332539","wikidata":"https://www.wikidata.org/wiki/Q2014564","display_name":"Articular cartilage","level":4,"score":0.4172999858856201},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.36039999127388},{"id":"https://openalex.org/C2778022156","wikidata":"https://www.wikidata.org/wiki/Q576145","display_name":"Strain (injury)","level":2,"score":0.35440000891685486},{"id":"https://openalex.org/C2781013607","wikidata":"https://www.wikidata.org/wiki/Q14877666","display_name":"Type II collagen","level":3,"score":0.3041999936103821},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.30239999294281006},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.289900004863739},{"id":"https://openalex.org/C171056886","wikidata":"https://www.wikidata.org/wiki/Q193119","display_name":"Regeneration (biology)","level":2,"score":0.2867000102996826},{"id":"https://openalex.org/C2779335624","wikidata":"https://www.wikidata.org/wiki/Q407976","display_name":"Proteoglycan","level":3,"score":0.2784999907016754},{"id":"https://openalex.org/C189165786","wikidata":"https://www.wikidata.org/wiki/Q193825","display_name":"Extracellular matrix","level":2,"score":0.27239999175071716},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.26980000734329224},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2671999931335449},{"id":"https://openalex.org/C181104049","wikidata":"https://www.wikidata.org/wiki/Q11936292","display_name":"Mechanotransduction","level":2,"score":0.2628999948501587},{"id":"https://openalex.org/C2776224515","wikidata":"https://www.wikidata.org/wiki/Q102253084","display_name":"ADAMTS","level":5,"score":0.2551000118255615}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001696","descriptor_name":"Biomechanical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001696","descriptor_name":"Biomechanical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001696","descriptor_name":"Biomechanical Phenomena","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002358","descriptor_name":"Cartilage, Articular","qualifier_ui":"Q000293","qualifier_name":"injuries","is_major_topic":true},{"descriptor_ui":"D002358","descriptor_name":"Cartilage, Articular","qualifier_ui":"Q000293","qualifier_name":"injuries","is_major_topic":true},{"descriptor_ui":"D002358","descriptor_name":"Cartilage, Articular","qualifier_ui":"Q000293","qualifier_name":"injuries","is_major_topic":true},{"descriptor_ui":"D002358","descriptor_name":"Cartilage, Articular","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002358","descriptor_name":"Cartilage, Articular","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002358","descriptor_name":"Cartilage, Articular","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002358","descriptor_name":"Cartilage, Articular","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":true},{"descriptor_ui":"D002358","descriptor_name":"Cartilage, Articular","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":true},{"descriptor_ui":"D002358","descriptor_name":"Cartilage, Articular","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":true},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010003","descriptor_name":"Osteoarthritis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010003","descriptor_name":"Osteoarthritis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010003","descriptor_name":"Osteoarthritis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D010003","descriptor_name":"Osteoarthritis","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":true},{"descriptor_ui":"D010003","descriptor_name":"Osteoarthritis","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":true},{"descriptor_ui":"D010003","descriptor_name":"Osteoarthritis","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":true},{"descriptor_ui":"D013314","descriptor_name":"Stress, Mechanical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013314","descriptor_name":"Stress, Mechanical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013314","descriptor_name":"Stress, Mechanical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053674","descriptor_name":"Aggrecans","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D053674","descriptor_name":"Aggrecans","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D053674","descriptor_name":"Aggrecans","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1371/journal.pcbi.1013641","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1013641","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},{"id":"pmid:41171940","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41171940","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS computational biology","raw_type":null},{"id":"pmh:oai:doaj.org/article:c15b0a8bb5094804910356c71fedf29b","is_oa":true,"landing_page_url":"https://doaj.org/article/c15b0a8bb5094804910356c71fedf29b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS Computational Biology, Vol 21, Iss 10, p e1013641 (2025)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:11403457","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12594405","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1371/journal.pcbi.1013641","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pcbi.1013641","pdf_url":null,"source":{"id":"https://openalex.org/S86033158","display_name":"PLoS Computational Biology","issn_l":"1553-734X","issn":["1553-734X","1553-7358"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS Computational Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1241827373","display_name":null,"funder_award_id":"00230091","funder_id":"https://openalex.org/F4320321726","funder_display_name":"Suomen Kulttuurirahasto"},{"id":"https://openalex.org/G248338323","display_name":null,"funder_award_id":"240074","funder_id":"https://openalex.org/F4320322456","funder_display_name":"P\u00e4ivikki ja Sakari Sohlbergin S\u00e4\u00e4ti\u00f6"},{"id":"https://openalex.org/G3033067308","display_name":null,"funder_award_id":"101108335","funder_id":"https://openalex.org/F4320338337","funder_display_name":"H2020 Marie Sk\u0142odowska-Curie Actions"},{"id":"https://openalex.org/G3920913505","display_name":null,"funder_award_id":"354916","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"},{"id":"https://openalex.org/G4686867812","display_name":"A computational mechano-inflammatory modeling approach to predict development of post-traumatic cartilage injuries and degeneration","funder_award_id":"354916","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"},{"id":"https://openalex.org/G5021344986","display_name":null,"funder_award_id":"363459","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"},{"id":"https://openalex.org/G5339613430","display_name":null,"funder_award_id":"NNF21OC0065373","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"},{"id":"https://openalex.org/G7501717246","display_name":"An interdisciplinary approach to uncover the mechanisms of progression of cartilage damage at the cellular and tissue levels","funder_award_id":"702586","funder_id":"https://openalex.org/F4320338337","funder_display_name":"H2020 Marie Sk\u0142odowska-Curie Actions"},{"id":"https://openalex.org/G8682945650","display_name":"Cell-driven digital twin for osteoarthritis therapy guidance","funder_award_id":"363459","funder_id":"https://openalex.org/F4320321108","funder_display_name":"Academy of Finland"}],"funders":[{"id":"https://openalex.org/F4320321108","display_name":"Academy of Finland","ror":"https://ror.org/05k73zm37"},{"id":"https://openalex.org/F4320321726","display_name":"Suomen Kulttuurirahasto","ror":"https://ror.org/027xav248"},{"id":"https://openalex.org/F4320322456","display_name":"P\u00e4ivikki ja Sakari Sohlbergin S\u00e4\u00e4ti\u00f6","ror":"https://ror.org/03bj5da63"},{"id":"https://openalex.org/F4320323760","display_name":"Sigrid Jus\u00e9liuksen S\u00e4\u00e4ti\u00f6","ror":"https://ror.org/00ckakm23"},{"id":"https://openalex.org/F4320325101","display_name":"Instrumentariumin Tiedes\u00e4\u00e4ti\u00f6","ror":"https://ror.org/02w907m39"},{"id":"https://openalex.org/F4320325957","display_name":"Novo Nordisk Fonden","ror":"https://ror.org/04txyc737"},{"id":"https://openalex.org/F4320331813","display_name":"Maire Lisko Foundation","ror":null},{"id":"https://openalex.org/F4320338337","display_name":"H2020 Marie Sk\u0142odowska-Curie Actions","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":95,"referenced_works":["https://openalex.org/W78661028","https://openalex.org/W98285988","https://openalex.org/W391345413","https://openalex.org/W1026203253","https://openalex.org/W1545271110","https://openalex.org/W1932870409","https://openalex.org/W1964828595","https://openalex.org/W1965309240","https://openalex.org/W1965415256","https://openalex.org/W1969357704","https://openalex.org/W1969454822","https://openalex.org/W1976175714","https://openalex.org/W1976797469","https://openalex.org/W1981495490","https://openalex.org/W1987301197","https://openalex.org/W1999126001","https://openalex.org/W2001284635","https://openalex.org/W2004019054","https://openalex.org/W2009350275","https://openalex.org/W2015521928","https://openalex.org/W2019038382","https://openalex.org/W2024712545","https://openalex.org/W2034430908","https://openalex.org/W2039050516","https://openalex.org/W2046601232","https://openalex.org/W2054833022","https://openalex.org/W2056001843","https://openalex.org/W2057657657","https://openalex.org/W2060177572","https://openalex.org/W2060498828","https://openalex.org/W2069925193","https://openalex.org/W2077741258","https://openalex.org/W2079356591","https://openalex.org/W2086382719","https://openalex.org/W2087958138","https://openalex.org/W2092301768","https://openalex.org/W2094173827","https://openalex.org/W2095028617","https://openalex.org/W2110982709","https://openalex.org/W2114954785","https://openalex.org/W2126870355","https://openalex.org/W2151043133","https://openalex.org/W2168605833","https://openalex.org/W2252607102","https://openalex.org/W2465128174","https://openalex.org/W2508132110","https://openalex.org/W2534232247","https://openalex.org/W2558753149","https://openalex.org/W2734787133","https://openalex.org/W2736288139","https://openalex.org/W2745599707","https://openalex.org/W2768345535","https://openalex.org/W2786048393","https://openalex.org/W2801097824","https://openalex.org/W2807946833","https://openalex.org/W2883019022","https://openalex.org/W2892376335","https://openalex.org/W2896072682","https://openalex.org/W2897877260","https://openalex.org/W2900673052","https://openalex.org/W2924932358","https://openalex.org/W2947666887","https://openalex.org/W2963755734","https://openalex.org/W2972521702","https://openalex.org/W2990593734","https://openalex.org/W2994756898","https://openalex.org/W3006918676","https://openalex.org/W3014070799","https://openalex.org/W3041958896","https://openalex.org/W3085228992","https://openalex.org/W3108073463","https://openalex.org/W3201527439","https://openalex.org/W4200324094","https://openalex.org/W4214555147","https://openalex.org/W4221089074","https://openalex.org/W4224101434","https://openalex.org/W4224240072","https://openalex.org/W4283010727","https://openalex.org/W4283068858","https://openalex.org/W4283752726","https://openalex.org/W4293340372","https://openalex.org/W4295648533","https://openalex.org/W4308653795","https://openalex.org/W4313946455","https://openalex.org/W4318169200","https://openalex.org/W4319161636","https://openalex.org/W4321188763","https://openalex.org/W4386271378","https://openalex.org/W4387425198","https://openalex.org/W4391565005","https://openalex.org/W4399556982","https://openalex.org/W4401864351","https://openalex.org/W4402288584","https://openalex.org/W4402511562","https://openalex.org/W4410258374"],"related_works":[],"abstract_inverted_index":{"Degenerative":[0],"musculoskeletal":[1],"diseases":[2],"like":[3],"osteoarthritis":[4],"can":[5,222],"be":[6],"initiated":[7],"by":[8,96,187],"joint":[9],"injury.":[10],"Injurious":[11],"overloading-induced":[12],"mechanical":[13,57,139],"straining":[14],"of":[15,29,33,109,127,156,174,228],"articular":[16],"cartilage":[17,24,83,131,219],"and":[18,61,115,143,152,164,190,226,235],"subsequent":[19],"biological":[20],"responses":[21,197],"may":[22],"trigger":[23],"degradation.":[25],"One":[26],"early":[27],"sign":[28],"degradation":[30,52],"is":[31,37],"loss":[32,170,184],"aggrecan":[34,77,110,150,157,169,183,199],"content":[35,78,111],"which":[36],"potentially":[38],"accelerated":[39],"near":[40],"chondral":[41],"lesions":[42],"under":[43],"physiological":[44,97,175],"loading.":[45,180],"Yet,":[46],"the":[47,134,159,204],"mechanoinflammatory":[48],"mechanisms":[49,75],"explaining":[50],"time-dependent":[51],"in":[53,80,124,203,214,224],"regions":[54],"with":[55,65,162],"disparate":[56],"loading":[58,99,136,176],"are":[59],"unclear":[60],"challenging":[62],"to":[63,120,133,178],"assess":[64],"experiments":[66,163],"alone.":[67],"Here,":[68],"we":[69],"developed":[70],"computational":[71],"models":[72,160],"unraveling":[73],"potential":[74],"behind":[76],"adaptation":[79,108,220],"fibril-reinforced":[81],"porohyperelastic":[82],"after":[84,171],"single":[85],"injurious":[86],"overloading":[87],"(50%":[88],"compressive":[89],"strain":[90,93],"magnitude,":[91],"100%/s":[92],"rate)":[94],"followed":[95],"cyclic":[98],"(15%":[100],"strain,":[101],"1":[102],"Hz,":[103],"haversine":[104],"waveform).":[105],"The":[106,181],"simulated":[107],"was":[112,185],"compared":[113,177],"spatially":[114],"at":[116],"several":[117],"time":[118],"points":[119],"tissue":[121,206],"composition":[122],"found":[123],"Safranin-O-stained":[125],"sections":[126],"young":[128],"bovine":[129],"knee":[130],"subjected":[132],"same":[135],"protocols.":[137],"Incorporating":[138],"strain-driven":[140],"cell":[141],"damage":[142],"downstream":[144],"proteolytic":[145,191],"enzyme":[146],"release,":[147],"fluid":[148,153,188],"flow-driven":[149],"depletion,":[151],"pressure-stimulated":[154],"regulation":[155],"biosynthesis,":[158],"agreed":[161],"exhibited":[165],"14%-points":[166],"greater":[167],"near-lesion":[168,182],"12":[172],"days":[173],"without":[179],"driven":[186],"flow":[189],"aggrecanase":[192],"activity,":[193],"while":[194],"chondroprotective":[195],"pro-anabolic":[196],"(increased":[198],"biosynthesis)":[200],"were":[201],"prominent":[202],"deeper":[205],"despite":[207],"damaged":[208],"superficial":[209],"layer.":[210],"This":[211],"significant":[212],"advancement":[213],"mechanistic":[215],"understanding":[216],"incorporated":[217],"into":[218],"model":[221],"help":[223],"development":[225],"guidance":[227],"personalized":[229],"therapies,":[230],"such":[231],"as":[232],"rehabilitation":[233],"protocols":[234],"tissue-engineered":[236],"constructs.":[237]},"counts_by_year":[],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-31T00:00:00"}
